Guide to the Human Genome
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Name: SPPL3 Sequence: fasta or formatted (384aa) NCBI GI: 33413418
Description:

signal peptide peptidase 3

Referenced in:

Aspartic Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         26           2
 C cysteine            2.6         10           2
 D aspartate           3.9         15           1
 E glutamate           1.6          6           1
 F phenylalanine       7.3         28           4
 G glycine             6.0         23           1
 H histidine           1.6          6           1
 I isoleucine          4.7         18           1
 K lysine              3.1         12           2
 L leucine            14.6         56           3
 M methionine          3.6         14           1
 N asparagine          3.6         14           2
 P proline             4.7         18           1
 Q glutamine           3.1         12           1
 R arginine            3.6         14           2
 S serine             12.0         46           4
 T threonine           4.7         18           1
 V valine              8.1         31           2
 W tryptophan          1.3          5           1
 Y tyrosine            3.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   signal peptide peptidase 3 
HM13                  0.115   minor histocompatibility antigen 13 isoform 3 
HM13                  0.115   minor histocompatibility antigen 13 isoform 2 
HM13                  0.115   minor histocompatibility antigen 13 isoform 1 
SPPL2B                0.114   signal peptide peptidase-like 2B isoform 3 
SPPL2B                0.114   signal peptide peptidase-like 2B isoform 2 
SPPL2A                0.110   signal peptide peptidase-like 2A 
IMP5                  0.098   intramembrane protease 5 
ATP1B4                0.012   ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso...
ATP1B4                0.011   ATPase, (Na+)/K+ transporting, beta 4 polypeptide i...
SFT2D1                0.011   SFT2 domain containing 1 
YIPF2                 0.007   Yip1 domain family, member 2 
RAG2                  0.005   recombination activating gene 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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