Guide to the Human Genome
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Name: KIAA0355 Sequence: fasta or formatted (1070aa) NCBI GI: 46276868
Description:

hypothetical protein LOC9710

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         96           3
 C cysteine            2.1         22           2
 D aspartate           4.3         46           2
 E glutamate           4.7         50           2
 F phenylalanine       3.5         37           2
 G glycine             7.6         81           3
 H histidine           2.5         27           2
 I isoleucine          2.9         31           1
 K lysine              4.7         50           2
 L leucine             8.2         88           2
 M methionine          2.6         28           1
 N asparagine          3.6         39           2
 P proline             8.7         93           5
 Q glutamine           8.6         92           3
 R arginine            3.9         42           2
 S serine              9.3         99           5
 T threonine           5.7         61           2
 V valine              5.0         54           3
 W tryptophan          1.3         14           1
 Y tyrosine            1.9         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9710 
MYST3                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.012   MYST histone acetyltransferase (monocytic leukemia)...
SFPQ                  0.011   splicing factor proline/glutamine rich (polypyrimidin...
RERE                  0.011   atrophin-1 like protein isoform b 
RERE                  0.011   atrophin-1 like protein isoform a 
RERE                  0.011   atrophin-1 like protein isoform a 
CRTC1                 0.011   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.011   mucoepidermoid carcinoma translocated 1 isoform 1 [...
SYN1                  0.010   synapsin I isoform Ia 
SYN1                  0.010   synapsin I isoform Ib 
FLJ10404              0.010   hypothetical protein LOC54540 
POU6F2                0.010   POU domain, class 6, transcription factor 2 
KCNN3                 0.010   small conductance calcium-activated potassium chann...
AMELX                 0.010   amelogenin (X chromosome) isoform 3 precursor 
AMELX                 0.010   amelogenin (X chromosome) isoform 2 precursor 
AMELX                 0.010   amelogenin (X chromosome) isoform 1 precursor 
BRD4                  0.009   bromodomain-containing protein 4 isoform long 
RBM22                 0.009   RNA binding motif protein 22 
CHERP                 0.009   calcium homeostasis endoplasmic reticulum protein [...
PDCD6IP               0.009   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.009   programmed cell death 6 interacting protein isoform ...
EP400                 0.009   E1A binding protein p400 
COL17A1               0.009   alpha 1 type XVII collagen 
NCOA6                 0.009   nuclear receptor coactivator 6 
PRRT3                 0.009   proline-rich transmembrane protein 3 
WASF2                 0.009   WAS protein family, member 2 
MED15                 0.009   mediator complex subunit 15 isoform a 
MED15                 0.009   mediator complex subunit 15 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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