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Search of human proteins with 30061569
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30061569 La ribonucleoprotein domain family member 2 isoform
3 [Homo sapiens]
(358 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 738 0.0
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 681 0.0
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 681 0.0
gi|61102725 la related protein isoform 2 [Homo sapiens] 293 2e-79
gi|39725634 la related protein isoform 1 [Homo sapiens] 293 2e-79
gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens] 157 2e-38
gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens] 157 2e-38
gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens] 157 2e-38
gi|40353738 c-Mpl binding protein isoform a [Homo sapiens] 69 8e-12
gi|40353736 c-Mpl binding protein isoform c [Homo sapiens] 69 8e-12
gi|40353740 c-Mpl binding protein isoform b [Homo sapiens] 69 8e-12
gi|10835067 autoantigen La [Homo sapiens] 59 9e-09
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 53 4e-07
gi|57634536 La ribonucleoprotein domain family, member 4B [Homo ... 53 5e-07
gi|37537710 La ribonucleoprotein domain family, member 6 isoform... 53 5e-07
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 50 2e-06
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 49 7e-06
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 49 7e-06
gi|213385278 TNF receptor-associated factor 3 interacting protei... 47 2e-05
gi|20070262 TNF receptor-associated factor 3 interacting protein... 47 2e-05
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 45 8e-05
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 45 8e-05
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 45 8e-05
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 45 8e-05
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 44 2e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 2e-04
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 43 4e-04
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 43 4e-04
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 43 5e-04
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 42 6e-04
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 738 bits (1906), Expect = 0.0
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
Sbjct: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 61 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS 120
EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
Sbjct: 61 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS 120
Query: 121 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
Sbjct: 121 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
Query: 181 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG 240
ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
Sbjct: 181 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG 240
Query: 241 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP 300
KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
Sbjct: 241 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP 300
Query: 301 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTGNIFSSRANDVTVGYLVQFTYLFIYFQFI 358
PPRSVPPTDFSQLIDCPEFVPGQAFCSHTGNIFSSRANDVTVGYLVQFTYLFIYFQFI
Sbjct: 301 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTGNIFSSRANDVTVGYLVQFTYLFIYFQFI 358
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 681 bits (1756), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
Sbjct: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 61 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS 120
EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
Sbjct: 61 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS 120
Query: 121 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
Sbjct: 121 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
Query: 181 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG 240
ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
Sbjct: 181 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG 240
Query: 241 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP 300
KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
Sbjct: 241 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP 300
Query: 301 PPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
PPRSVPPTDFSQLIDCPEFVPGQAFCSHT
Sbjct: 301 PPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 681 bits (1756), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
Sbjct: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 61 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS 120
EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
Sbjct: 61 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS 120
Query: 121 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
Sbjct: 121 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
Query: 181 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG 240
ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
Sbjct: 181 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG 240
Query: 241 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP 300
KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
Sbjct: 241 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP 300
Query: 301 PPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
PPRSVPPTDFSQLIDCPEFVPGQAFCSHT
Sbjct: 301 PPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 293 bits (749), Expect = 2e-79
Identities = 164/345 (47%), Positives = 221/345 (64%), Gaps = 22/345 (6%)
Query: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 175 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 233
Query: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 234 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 293
Query: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 294 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 353
Query: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 354 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 412
Query: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 413 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 472
Query: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
K+R++ EPEKWP+ PP TDFSQL++CPEFVP Q + T
Sbjct: 473 KVRRREEPEKWPL--PPIVDYSQTDFSQLLNCPEFVPRQHYQKET 515
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 293 bits (749), Expect = 2e-79
Identities = 164/345 (47%), Positives = 221/345 (64%), Gaps = 22/345 (6%)
Query: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 98 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 156
Query: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 157 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 216
Query: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 217 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 276
Query: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 277 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 335
Query: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 336 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 395
Query: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
K+R++ EPEKWP+ PP TDFSQL++CPEFVP Q + T
Sbjct: 396 KVRRREEPEKWPL--PPIVDYSQTDFSQLLNCPEFVPRQHYQKET 438
>gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 157 bits (396), Expect = 2e-38
Identities = 83/100 (83%), Positives = 88/100 (88%), Gaps = 2/100 (2%)
Query: 190 ELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLP 249
ELNTSMMYYYDDGTGVQVY VEEALLKE IKRQIE+YF+ EN ERD+FLRGK EQ LP
Sbjct: 196 ELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERDYFLRGKRGEQDSLP 255
Query: 250 ISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKK 289
I LIAGFQRVQALTT NLI EALKDSTEVEI++EKMRKK
Sbjct: 256 IFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKK 293
Score = 64.7 bits (156), Expect = 1e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEK 35
MENW TPSELVNTG+QSVLSQGNKKPQ+RKEK +
Sbjct: 161 MENWRTPSELVNTGYQSVLSQGNKKPQDRKEKRRE 195
>gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 157 bits (396), Expect = 2e-38
Identities = 83/100 (83%), Positives = 88/100 (88%), Gaps = 2/100 (2%)
Query: 190 ELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLP 249
ELNTSMMYYYDDGTGVQVY VEEALLKE IKRQIE+YF+ EN ERD+FLRGK EQ LP
Sbjct: 196 ELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERDYFLRGKRGEQDSLP 255
Query: 250 ISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKK 289
I LIAGFQRVQALTT NLI EALKDSTEVEI++EKMRKK
Sbjct: 256 IFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKK 293
Score = 64.7 bits (156), Expect = 1e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEK 35
MENW TPSELVNTG+QSVLSQGNKKPQ+RKEK +
Sbjct: 161 MENWRTPSELVNTGYQSVLSQGNKKPQDRKEKRRE 195
>gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 157 bits (396), Expect = 2e-38
Identities = 83/100 (83%), Positives = 88/100 (88%), Gaps = 2/100 (2%)
Query: 190 ELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLP 249
ELNTSMMYYYDDGTGVQVY VEEALLKE IKRQIE+YF+ EN ERD+FLRGK EQ LP
Sbjct: 196 ELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERDYFLRGKRGEQDSLP 255
Query: 250 ISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKK 289
I LIAGFQRVQALTT NLI EALKDSTEVEI++EKMRKK
Sbjct: 256 IFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKK 293
Score = 64.7 bits (156), Expect = 1e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 1 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEK 35
MENW TPSELVNTG+QSVLSQGNKKPQ+RKEK +
Sbjct: 161 MENWRTPSELVNTGYQSVLSQGNKKPQDRKEKRRE 195
>gi|40353738 c-Mpl binding protein isoform a [Homo sapiens]
Length = 724
Score = 68.6 bits (166), Expect = 8e-12
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 164 GNPRLNFD----YSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEAL----- 214
GN L+ D Y Y E T E +T M + Q+Y V
Sbjct: 56 GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVS 115
Query: 215 ---LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILE 271
LKE +K+Q+E+ FS ENL +D +L +MD F+PI +A + ++ LTT+ +LILE
Sbjct: 116 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 175
Query: 272 ALKDSTEVEIVDEKMRK 288
L+ S V+ VDEK K
Sbjct: 176 VLRSSPMVQ-VDEKGEK 191
>gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
Length = 653
Score = 68.6 bits (166), Expect = 8e-12
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 164 GNPRLNFD----YSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEAL----- 214
GN L+ D Y Y E T E +T M + Q+Y V
Sbjct: 56 GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVS 115
Query: 215 ---LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILE 271
LKE +K+Q+E+ FS ENL +D +L +MD F+PI +A + ++ LTT+ +LILE
Sbjct: 116 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 175
Query: 272 ALKDSTEVEIVDEKMRK 288
L+ S V+ VDEK K
Sbjct: 176 VLRSSPMVQ-VDEKGEK 191
>gi|40353740 c-Mpl binding protein isoform b [Homo sapiens]
Length = 730
Score = 68.6 bits (166), Expect = 8e-12
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 164 GNPRLNFD----YSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEAL----- 214
GN L+ D Y Y E T E +T M + Q+Y V
Sbjct: 62 GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVS 121
Query: 215 ---LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILE 271
LKE +K+Q+E+ FS ENL +D +L +MD F+PI +A + ++ LTT+ +LILE
Sbjct: 122 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 181
Query: 272 ALKDSTEVEIVDEKMRK 288
L+ S V+ VDEK K
Sbjct: 182 VLRSSPMVQ-VDEKGEK 197
>gi|10835067 autoantigen La [Homo sapiens]
Length = 408
Score = 58.5 bits (140), Expect = 9e-09
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 213 ALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLILE 271
A L+ I QIEYYF NL RD FL+ ++ ++G++P+ ++ F R+ LTT+ N+I+E
Sbjct: 11 AALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVE 70
Query: 272 ALKDSTE--VEIVDEKMRKKIEPEKWPIP 298
AL S +EI ++K + + P K P+P
Sbjct: 71 ALSKSKAELMEISEDKTKIRRSPSK-PLP 98
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 53.1 bits (126), Expect = 4e-07
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 30 KEKEEKVEKRSNSDS-KENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHLDVVRS 88
K K++ V+ R + + K+++E L S D SS+ R+R+ + K H +
Sbjct: 709 KYKDDPVDLRLDIERRKKHKERDLKRGKSRESVDSRDSSHSRERSAE-KTEKTHKGSKKQ 767
Query: 89 ESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSE-------- 140
+ R +R+ SR +++ +H+ + + +RE+ D S + ++
Sbjct: 768 KKHRR--ARDRSRSSSSSSQSSHSYKAEEYTEETEEREESTTGFDKSRLGTKDFVGPSER 825
Query: 141 -GGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYY 199
GG RG+F+ R RGRG GRG GN N + + + E D + + + Y +
Sbjct: 826 GGGRARGTFQFRARGRGWGRGNYSGNNNNNSNNDFQKRNREEEWDPEYTPK--SKKYYLH 883
Query: 200 DDGTG 204
DD G
Sbjct: 884 DDREG 888
Score = 31.2 bits (69), Expect = 1.5
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 58 NVSEDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRN-SSRCQPEANKPTHNNRRN 116
N S+ ++SS R A++ + RS S R R SSR + + P HN RN
Sbjct: 5 NKSKSGSRSSRSRS-ASRSRSRSFSKSRSRSRSLSRSRKRRLSSRSRSRSYSPAHNRERN 63
Query: 117 DTRSWKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRG---RGRGRGRGRGNPRLNF-DY 172
R + ++R+ R + G FRGR RG G+ G GN R N+ +Y
Sbjct: 64 HPRVY-QNRDFRG--------HNRGYRRPYYFRGRNRGFYPWGQYNRGGYGNYRSNWQNY 114
Query: 173 SYGYQEHGERT 183
Y R+
Sbjct: 115 RQAYSPRRGRS 125
Score = 30.4 bits (67), Expect = 2.6
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 21/153 (13%)
Query: 21 QGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSE-DEAQSSNQRKRANKHKWV 79
+G+KK + + ++ + S+S S+ + K E E +E+ + + R +V
Sbjct: 762 KGSKKQKKHRRARDR-SRSSSSSSQSSHSYKAEEYTEETEEREESTTGFDKSRLGTKDFV 820
Query: 80 PLHLDVVRSESQERPGSRNSSRCQPEA--------NKPTHNNRRNDTRSWKRDREKRDDQ 131
ER G R Q A N +NN ++ KR+RE ++
Sbjct: 821 G---------PSERGGGRARGTFQFRARGRGWGRGNYSGNNNNNSNNDFQKRNRE--EEW 869
Query: 132 DDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRG 164
D + +S+ + G G + RGRGRG
Sbjct: 870 DPEYTPKSKKYYLHDDREGEGSDKWVSRGRGRG 902
>gi|57634536 La ribonucleoprotein domain family, member 4B [Homo
sapiens]
Length = 738
Score = 52.8 bits (125), Expect = 5e-07
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 216 KEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKD 275
+E +K+ +E+ S ENL D +L +MD ++PI+ +A ++ L+T+++LI+E L+
Sbjct: 157 REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRS 216
Query: 276 STEVEIVDEKMRKKIEPEK 294
V+ VDEK +K+ P +
Sbjct: 217 LPLVQ-VDEK-GEKVRPNQ 233
>gi|37537710 La ribonucleoprotein domain family, member 6 isoform 1
[Homo sapiens]
Length = 491
Score = 52.8 bits (125), Expect = 5e-07
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 209 PVEEALLKEYIKRQIEYYFSVENLERDFFL--RGKMDEQGFLPISLIAGFQRVQALTTNL 266
P +E L+K+ + QIE+YFS ENLE+D FL + ++ G++ + L+ F++V+ LT +
Sbjct: 87 PPDEELIKKLVD-QIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDW 145
Query: 267 NLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVP 306
ALK S +E+ ++ + + P+P P ++P
Sbjct: 146 RTTAHALKYSVVLELNEDHRKVR---RTTPVPLFPNENLP 182
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 50.4 bits (119), Expect = 2e-06
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 20/166 (12%)
Query: 21 QGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQR-------KRA 73
Q ++K Q R E++ + E++ + RE + N E E E + QR K
Sbjct: 282 QTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERERERERQRETERDREKER 341
Query: 74 NKHKWVPLHLDVVRSESQERPGSRNSSR---CQPEANKPTHNNRRNDTRSWKRDREK--- 127
+ + +D R+ R G R + R + E ++ + R R RDR+K
Sbjct: 342 ERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDRQKERE 401
Query: 128 ------RDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
RD Q + R E R S RGR RGR R + +GR R
Sbjct: 402 RQTEKDRDGQRETEKQR-EREKDRESERGRERGREREKQKGRERDR 446
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 21 QGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVP 80
Q + KE+E K ++++ D + NR+T G + E E + R+ A
Sbjct: 330 QRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQSAR------ 383
Query: 81 LHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSE 140
E +ER R+ R Q E + T + R+ R ++ RE+ D++ SE
Sbjct: 384 --------EREERERDRDRDR-QKERERQTEKD-RDGQRETEKQREREKDRE------SE 427
Query: 141 GGNIRGSFRGRGRGRGRGRGR 161
G RG R + +GR R R R
Sbjct: 428 RGRERGREREKQKGRERDRER 448
Score = 43.1 bits (100), Expect = 4e-04
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 21 QGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQS--SNQRKRANKHKW 78
Q + + + ++++ + E+ +D + R+T+ N E E Q +R+R ++K
Sbjct: 142 QTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKT 201
Query: 79 VPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVR 138
H + R +ER + R K + R+ R +R+REK+ +++ S
Sbjct: 202 EDRHSERGRERERERETETETER------KRQTDRERDRQRKTEREREKQAERERASERE 255
Query: 139 SEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTE 190
+E R R R R R R R R + D ++ RT++ +TE
Sbjct: 256 TE----RDKERERERDRDRDRDRRQKERERQTD-----RKRQRRTERDRETE 298
Score = 41.6 bits (96), Expect = 0.001
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 20 SQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWV 79
S+ ++ + +E E + E++ +D + +R+ K E +E E S + +R + +
Sbjct: 206 SERGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKERE-- 263
Query: 80 PLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRS 139
+ER R+ R Q E + T R+ T + KR+ Q + R
Sbjct: 264 -----------RERDRDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERE 312
Query: 140 EGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
R R R R R R R R R R
Sbjct: 313 -----RNRKRERERERERERERQRETER 335
Score = 37.7 bits (86), Expect = 0.016
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 28/137 (20%)
Query: 24 KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHL 83
++ Q +E++ + EK N + RET+ G + + Q +R+R
Sbjct: 105 RERQTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRD---------- 154
Query: 84 DVVRSESQERPGSRNSSRCQPEANKPTHNNR---RNDTRSWKRDREKRDDQDDVSSVRSE 140
+ +ER R R Q E N+ R R + R +R REK + +D
Sbjct: 155 ---AEKERERQTDRERQR-QTERNRQKEREREKNRQERRERERQREKENKTED------- 203
Query: 141 GGNIRGSFRGRGRGRGR 157
R S RGR R R R
Sbjct: 204 ----RHSERGRERERER 216
Score = 37.0 bits (84), Expect = 0.027
Identities = 41/169 (24%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 22 GNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPL 81
G ++ + ++E+E+ E + RE + + + + Q+ QRKR+ + P
Sbjct: 410 GQRETEKQREREKDRESERGRERGREREKQKGRERDRERQTDRQAGRQRKRSTLYVNPP- 468
Query: 82 HLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSEG 141
P + S Q + N+PT R WK E +S R
Sbjct: 469 ------------PRTARSGVVQSDPNRPTRGIR------WKSSPE----DPKAASTRFPW 506
Query: 142 GNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTE 190
G R RGR GR R PRL G + G R F TE
Sbjct: 507 G------RPAKASRGRVAGRRRWEPRLGEKRGQGGE--GRRPSGGFGTE 547
Score = 35.0 bits (79), Expect = 0.10
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 8/147 (5%)
Query: 21 QGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVP 80
Q +++ +++ E + EK++ + RET E E E + R R + K
Sbjct: 227 QTDRERDRQRKTEREREKQAERERASERET------ERDKERERERDRDRDRDRRQKERE 280
Query: 81 LHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSE 140
D R ER R + R + + RN R +R+RE+ ++ + E
Sbjct: 281 RQTDRKRQRRTER--DRETERKRERQRERERERERNRKRERERERERERERQRETERDRE 338
Query: 141 GGNIRGSFRGRGRGRGRGRGRGRGNPR 167
R R R R R GR R
Sbjct: 339 KERERKRKRQTEMDRERNRQTGREGRR 365
Score = 34.7 bits (78), Expect = 0.14
Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 24 KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRAN-------KH 76
+K Q +E + K E+R D R+ + E E Q+ +R R K
Sbjct: 67 EKRQTERETDRKRERRREKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKE 126
Query: 77 KWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSS 136
+ + R ++ G R R + + R R +R+R+K +++
Sbjct: 127 RERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQ 186
Query: 137 VRSEGGNIR---GSFRGRGRGRGRGRGRGR 163
R E R R RGR R R R
Sbjct: 187 ERRERERQREKENKTEDRHSERGRERERER 216
Score = 34.3 bits (77), Expect = 0.18
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 20/184 (10%)
Query: 20 SQGNKKPQNR-KEKEEKVEKRS---NSDSKENRETKLNGPGENVSEDEAQSSNQRKRANK 75
+ G+ + +NR KE+E + EKR +D K R + + + E Q +++R +
Sbjct: 49 ADGDDRERNRQKERERRREKRQTERETDRKRERRREKDRHRKRDRHRERQRDREKERERQ 108
Query: 76 HKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDT-----RSWKRDREK-RD 129
D R +E+ +R R + E + R T R +RD EK R+
Sbjct: 109 -------TDRERDRQREKERNRQKER-ERETEREGERGRDRQTDGQRERERQRDAEKERE 160
Query: 130 DQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQT 189
Q D R N R R R + R R R R + N + E G ++ +T
Sbjct: 161 RQTDRERQRQTERN-RQKEREREKNRQERRERERQREKEN-KTEDRHSERGRERERERET 218
Query: 190 ELNT 193
E T
Sbjct: 219 ETET 222
Score = 32.0 bits (71), Expect = 0.88
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 24 KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGEN-----VSEDEAQSSNQR-KRANKHK 77
+K + +EK+ + E+ S +++ ++E + + E E Q+ +R +R + +
Sbjct: 236 RKTEREREKQAERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTERDR 295
Query: 78 WVPLHLDVVRSESQERPGSRNSSR-----CQPEANKPTHNNRRNDTRSWKRDREKRDDQD 132
+ R +ER +R R + E + T +R + R KR R+ D++
Sbjct: 296 ETERKRERQRERERERERNRKRERERERERERERQRETERDREKE-RERKRKRQTEMDRE 354
Query: 133 DVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGER 182
EG R + R R R R R R R D Q+ ER
Sbjct: 355 RNRQTGREGR--RQAERERERERERDRQSAREREERERDRDRDRQKERER 402
Score = 31.2 bits (69), Expect = 1.5
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 79 VPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVR 138
+PL R SQE P R + +A+ + RN + +R REKR + + R
Sbjct: 22 IPLDFSRRRPGSQESPRRRGLGQAHKDADGD--DRERNRQKERERRREKRQTERETDRKR 79
Query: 139 SEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
R R R R R R R R R R
Sbjct: 80 ERR---REKDRHRKRDRHRERQRDREKER 105
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 48.9 bits (115), Expect = 7e-06
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 219 IKRQIEYYFSVENLERDFFLRGKMDEQ--GFLPISLIAGFQRVQALTTNLNLILEALKDS 276
I +Q++++F NL +D FLR ++++ G++ ISL+ F +++ LTT+ LI AL+ S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 277 TEVEI 281
VE+
Sbjct: 98 AVVEL 102
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 48.9 bits (115), Expect = 7e-06
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 219 IKRQIEYYFSVENLERDFFLRGKMDEQ--GFLPISLIAGFQRVQALTTNLNLILEALKDS 276
I +Q++++F NL +D FLR ++++ G++ ISL+ F +++ LTT+ LI AL+ S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 277 TEVEI 281
VE+
Sbjct: 98 AVVEL 102
>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
isoform 2 [Homo sapiens]
Length = 625
Score = 47.4 bits (111), Expect = 2e-05
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 19 LSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKW 78
L+ +++ N+ +EE+ N++ + + E K E ++K K
Sbjct: 142 LTSRSQELDNKNVREEESRVHKNTEDRGDAEIK---------ERSTSRDRKQKEELKEDR 192
Query: 79 VPLHLDVVRSESQERPGSRN--SSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSS 136
P D + +++E G+R+ R + +A N R+ D + +RDR+ ++ +
Sbjct: 193 KPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKE--TE 250
Query: 137 VRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRL-NFDYSYGY-QEHGERTDQPFQTELNT- 193
+SEGG + R R R R R +G+ R R+ N ++S+ +E D+P + ++
Sbjct: 251 RKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHDKPEKKSASSG 310
Query: 194 SMMYYYDDGT 203
M DGT
Sbjct: 311 EMSKKLSDGT 320
>gi|20070262 TNF receptor-associated factor 3 interacting protein 1
isoform 1 [Homo sapiens]
Length = 691
Score = 47.4 bits (111), Expect = 2e-05
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 19 LSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKW 78
L+ +++ N+ +EE+ N++ + + E K E ++K K
Sbjct: 142 LTSRSQELDNKNVREEESRVHKNTEDRGDAEIK---------ERSTSRDRKQKEELKEDR 192
Query: 79 VPLHLDVVRSESQERPGSRN--SSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSS 136
P D + +++E G+R+ R + +A N R+ D + +RDR+ ++ +
Sbjct: 193 KPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKE--TE 250
Query: 137 VRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRL-NFDYSYGY-QEHGERTDQPFQTELNT- 193
+SEGG + R R R R R +G+ R R+ N ++S+ +E D+P + ++
Sbjct: 251 RKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHDKPEKKSASSG 310
Query: 194 SMMYYYDDGT 203
M DGT
Sbjct: 311 EMSKKLSDGT 320
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 45.4 bits (106), Expect = 8e-05
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
D + V S + E + G RGRGRGRGRGRGRGRG PR
Sbjct: 82 DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 45.4 bits (106), Expect = 8e-05
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 129 DDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
D + V S + E + G RGRGRGRGRGRGRGRG PR
Sbjct: 82 DVEPKVKSKKREA--VAGRGRGRGRGRGRGRGRGRGGPR 118
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 45.4 bits (106), Expect = 8e-05
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 106 ANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGN 165
A P RR R R R + GG + G RGRGRGRGRGRGRGRG
Sbjct: 42 APSPVSGVRREGARGGGRGRGRWKQA-------GRGGGVCGRGRGRGRGRGRGRGRGRGR 94
Query: 166 PR 167
R
Sbjct: 95 GR 96
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 45.4 bits (106), Expect = 8e-05
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 106 ANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGN 165
A P RR R R R + GG + G RGRGRGRGRGRGRGRG
Sbjct: 42 APSPVSGVRREGARGGGRGRGRWKQA-------GRGGGVCGRGRGRGRGRGRGRGRGRGR 94
Query: 166 PR 167
R
Sbjct: 95 GR 96
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 43.9 bits (102), Expect = 2e-04
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 23 NKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLH 82
+K+ + R+ + +RS S KE R + + + +SS R+RA + +
Sbjct: 249 DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEE 308
Query: 83 L-----DVVR-SESQERPGSRNS-SRCQPEA-NKPTHNNRRNDT---RSWKRDREKRDDQ 131
L D+ SE+ + P P+ + P R D RS + +RE+R D+
Sbjct: 309 LRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDR 368
Query: 132 D-DVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQE 178
D D R RGS RGR RG G G+ G L D Y E
Sbjct: 369 DRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYME 416
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 43.9 bits (102), Expect = 2e-04
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 22/153 (14%)
Query: 16 QSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANK 75
+S S G+ P +K+K K +R SDS R+ + S +RK NK
Sbjct: 188 ESECSCGSSSPLRKKKKSVKKHRRDRSDSGSRRKRR---------HRSRSSKCKRKEKNK 238
Query: 76 HKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREK-RDDQDDV 134
K P E PG R+ ++ P+ ++ +D+RS R K RD+
Sbjct: 239 EKKRP---------HTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKT 289
Query: 135 SSVRSEGGNIRGSFRGRGRG---RGRGRGRGRG 164
S RS G G G G R G G+ G
Sbjct: 290 GSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSG 322
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 43.1 bits (100), Expect = 4e-04
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 56 GENVSEDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRR 115
G S+ E +S ++RK+ ++ RS S SR SR K R
Sbjct: 2 GRRSSDTEEESRSKRKKKHRR----------RSSSSSSSDSRTYSR------KKGGRKSR 45
Query: 116 NDTRSWKRDREKRD-DQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGR 161
+ +RSW RD + R D RS + GS R R R R RGRG+
Sbjct: 46 SKSRSWSRDLQPRSHSYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGK 92
Score = 33.1 bits (74), Expect = 0.39
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 28 NRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHLDVVR 87
+R+ + S ++ ++ G G++ ++S ++ +R+ R
Sbjct: 63 DRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRS-------------R 109
Query: 88 SESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSS-------VRSE 140
S + R SR+S R +++ T + R+ R RD+EKR+ + D R E
Sbjct: 110 SRPRLRSHSRSSER---SSHRRTRSRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGE 166
Query: 141 GGNIR 145
GNI+
Sbjct: 167 SGNIK 171
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 43.1 bits (100), Expect = 4e-04
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 18/186 (9%)
Query: 14 GFQSVLSQGNKKPQNRKEKEEK--VEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRK 71
G S+L + K +E++E + K + ++ + L+ + SE+E + +
Sbjct: 140 GPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSN 199
Query: 72 RANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQ 131
R ++ K H S S R S +SSR + + + ++ ++ +RS R+R +
Sbjct: 200 RRSRSKSRSSH-----SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGS 254
Query: 132 DDVSSVRSEGGNI---RGSF--------RGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG 180
SS RS G+ + S+ R R R R R G R S Q G
Sbjct: 255 KSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIG 314
Query: 181 ERTDQP 186
E T QP
Sbjct: 315 ENTKQP 320
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 42.7 bits (99), Expect = 5e-04
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 28/207 (13%)
Query: 24 KKPQNRKEKE-------EKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSN---QRKRA 73
KK ++RK+K+ K K S+S S + + E+ SE E+ + QRK+
Sbjct: 235 KKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKR 294
Query: 74 NKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNR---RNDTRSWKRDREKRD- 129
K+K + S+S+E+ ++ R E +H+NR + R K + + D
Sbjct: 295 KKNKCSGHN----NSDSEEK--DKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDS 348
Query: 130 -----DQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQE---HGE 181
D D S RGS R G R GR R SY +E +
Sbjct: 349 KWSHSDSDKKSRTHKHSPEKRGSERKEGSSRSHGREERSRRSRSRSPGSYKQRETRKRAQ 408
Query: 182 RTDQPFQTELNTSMMYYYDDGTGVQVY 208
R Q+ N S + D G ++Y
Sbjct: 409 RNPGEEQSRRNDSRSHGTDLYRGEKMY 435
Score = 42.7 bits (99), Expect = 5e-04
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 40/190 (21%)
Query: 8 SELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSS 67
+E + +S + KK Q +K K+ K +NSDS+E ++K + +E SS
Sbjct: 271 TETSESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSK-----KRKLHEELSSS 325
Query: 68 NQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREK 127
+ + K K P L SSR E +K +H++ +R+ K EK
Sbjct: 326 HHNREKAKEK--PRFL------------KHESSR---EDSKWSHSDSDKKSRTHKHSPEK 368
Query: 128 RDDQDDVSSVRSEGGNIR---------GSFRGRGRGRGRGRGRGRGNPRLNFDYSYG--- 175
R + S RS G R GS++ R + R G R N S+G
Sbjct: 369 RGSERKEGSSRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQSRRNDSRSHGTDL 428
Query: 176 ------YQEH 179
Y+EH
Sbjct: 429 YRGEKMYREH 438
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 42.4 bits (98), Expect = 6e-04
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 21 QGNKKPQNRK-EKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWV 79
+G K+ + ++ EKE + +R +E RE + E E E + +R+R
Sbjct: 295 KGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDR----- 349
Query: 80 PLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRS 139
D R++ ++R R R + N R+ +R RDRE+ +++
Sbjct: 350 ----DRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERER 405
Query: 140 EGGNIRGSFRGRGRGRGRGRGRGRGNPR 167
E R R R R R R R + + R
Sbjct: 406 EREREREREREREREREREREKDKKRDR 433
Score = 33.9 bits (76), Expect = 0.23
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 24 KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSE-DEAQSSNQRKRANKHKWVPLH 82
++ + KEKE + E+ + D +E + E + D +SS++ K ++ +
Sbjct: 331 REREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRD 390
Query: 83 LDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQD 132
+ R +ER R R + + R + KRDRE+ D++D
Sbjct: 391 REREREREREREREREREREREREREREREREREREKDKKRDREE-DEED 439
Score = 32.7 bits (73), Expect = 0.51
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 30 KEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHLDVVRSE 89
++ +K+E+ KE +E + ++ + +R+R + + + R
Sbjct: 285 RDTHKKLEEEKGKKEKERQE---------IEKERRERERERERERERRERERERERERER 335
Query: 90 SQERPGSRNSSRCQPEANKPTHNNRRNDTRSWKRDREKRDDQDDVSSVRSEGGNIRGSFR 149
+E+ R R + + R+ R RDRE+ D++ + R R
Sbjct: 336 EKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRN------KDRSRSREKSR 389
Query: 150 GRGRGRGRGRGRGRGNPR 167
R R R R R R R R
Sbjct: 390 DRERERERERERERERER 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,672,914
Number of Sequences: 37866
Number of extensions: 802680
Number of successful extensions: 7197
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 5172
Number of HSP's gapped (non-prelim): 1600
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.