Guide to the Human Genome
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Name: SLC45A4 Sequence: fasta or formatted (798aa) NCBI GI: 122937259
Description:

solute carrier family 45, member 4

Referenced in:

Skin and Related Tissues
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         64           2
 C cysteine            1.9         15           1
 D aspartate           4.3         34           1
 E glutamate           5.3         42           2
 F phenylalanine       4.5         36           3
 G glycine             8.5         68           2
 H histidine           2.3         18           2
 I isoleucine          4.5         36           2
 K lysine              3.4         27           2
 L leucine            11.3         90           2
 M methionine          2.4         19           1
 N asparagine          2.1         17           1
 P proline             5.3         42           1
 Q glutamine           4.0         32           2
 R arginine            5.6         45           4
 S serine              9.3         74           3
 T threonine           5.5         44           2
 V valine              6.9         55           3
 W tryptophan          1.6         13           1
 Y tyrosine            3.4         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 45, member 4 
SLC45A1               0.211   DNB5 
SLC45A2               0.100   membrane-associated transporter protein isoform a [H...
SLC45A2               0.100   membrane-associated transporter protein isoform b [H...
SLC45A3               0.058   prostein 
LOC100133636          0.004   PREDICTED: similar to hCG1806822 
ARMC2                 0.004   armadillo repeat containing 2 
SLCO5A1               0.004   solute carrier organic anion transporter family, me...
SLCO5A1               0.004   solute carrier organic anion transporter family, me...
SLCO5A1               0.004   solute carrier organic anion transporter family, me...
FLVCR2                0.004   feline leukemia virus subgroup C cellular receptor ...
NEFH                  0.004   neurofilament, heavy polypeptide 200kDa 
PRUNE2                0.003   prune homolog 2 
NKTR                  0.003   natural killer-tumor recognition sequence 
DCAF8L2               0.003   DDB1 and CUL4 associated factor 8-like 2 
SLC39A8               0.003   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.003   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.003   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.003   solute carrier family 39 (zinc transporter), member...
HEMK1                 0.003   HemK methyltransferase family member 1 
IMPG2                 0.003   interphotoreceptor matrix proteoglycan 2 
C1orf63               0.003   hypothetical protein LOC57035 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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