Guide to the Human Genome
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Name: SLC45A2 Sequence: fasta or formatted (460aa) NCBI GI: 61636000
Description:

membrane-associated transporter protein isoform b

Referenced in:

Skin and Related Tissues
Solute Carrier Families

Other entries for this name:
alt prot [530aa] membrane-associated transporter protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         30           2
 C cysteine            2.4         11           2
 D aspartate           3.0         14           2
 E glutamate           4.3         20           3
 F phenylalanine       6.5         30           3
 G glycine             8.9         41           2
 H histidine           3.0         14           1
 I isoleucine          4.8         22           1
 K lysine              3.3         15           1
 L leucine            12.4         57           2
 M methionine          3.5         16           2
 N asparagine          2.8         13           1
 P proline             5.0         23           2
 Q glutamine           2.4         11           2
 R arginine            4.1         19           3
 S serine              7.8         36           2
 T threonine           4.8         22           1
 V valine              7.6         35           2
 W tryptophan          1.3          6           1
 Y tyrosine            5.4         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-associated transporter protein isoform b [H... 
SLC45A2               0.988   membrane-associated transporter protein isoform a [H...
SLC45A1               0.209   DNB5 
SLC45A4               0.172   solute carrier family 45, member 4 
SLC45A3               0.164   prostein 
ABHD1                 0.008   abhydrolase domain-containing protein 1 
PKD2                  0.005   polycystin 2 
SYNGR1                0.005   synaptogyrin 1 isoform 1c 
TRPC5                 0.004   transient receptor potential cation channel, subfamil...
TRPC4                 0.004   transient receptor potential cation channel, subfam...
TRPC4                 0.004   transient receptor potential cation channel, subfam...
TRPC4                 0.004   transient receptor potential cation channel, subfam...
TRPC4                 0.004   transient receptor potential cation channel, subfam...
TRPC4                 0.004   transient receptor potential cation channel, subfam...
TRPC4                 0.004   transient receptor potential cation channel, subfamil...
SFT2D2                0.004   SFT2 domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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