Guide to the Human Genome
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Name: FAM59A Sequence: fasta or formatted (875aa) NCBI GI: 12232415
Description:

hypothetical protein LOC64762

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         39           2
 C cysteine            2.9         25           2
 D aspartate           4.8         42           1
 E glutamate           7.3         64           2
 F phenylalanine       3.4         30           2
 G glycine             5.5         48           2
 H histidine           2.6         23           2
 I isoleucine          4.2         37           1
 K lysine              6.4         56           2
 L leucine             9.3         81           2
 M methionine          1.0          9           1
 N asparagine          3.7         32           2
 P proline             9.4         82           4
 Q glutamine           3.2         28           2
 R arginine            4.8         42           1
 S serine             11.4        100           3
 T threonine           5.3         46           2
 V valine              6.4         56           3
 W tryptophan          1.1         10           1
 Y tyrosine            2.9         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC64762 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
NOLC1                 0.013   nucleolar and coiled-body phosphoprotein 1 
PRG4                  0.012   proteoglycan 4 isoform D 
PRG4                  0.012   proteoglycan 4 isoform C 
PRG4                  0.012   proteoglycan 4 isoform B 
PRG4                  0.012   proteoglycan 4 isoform A 
MUC12                 0.011   PREDICTED: mucin 12 
LOC100133714          0.011   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.011   PREDICTED: mucin 12 
SRRM2                 0.011   splicing coactivator subunit SRm300 
SRRM1                 0.011   serine/arginine repetitive matrix 1 
MUC2                  0.011   mucin 2 precursor 
KIAA1210              0.011   hypothetical protein LOC57481 
MUC17                 0.010   mucin 17 
WASF1                 0.010   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.010   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.010   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.010   Wiskott-Aldrich syndrome protein family member 1 [Hom...
PCLO                  0.010   piccolo isoform 2 
PCLO                  0.010   piccolo isoform 1 
KIAA1522              0.010   hypothetical protein LOC57648 
MICALL1               0.010   molecule interacting with Rab13 
POLR2A                0.010   DNA-directed RNA polymerase II A 
MKL1                  0.010   megakaryoblastic leukemia 1 protein 
MUC12                 0.010   PREDICTED: mucin 12, cell surface associated 
TESK1                 0.010   testis-specific protein kinase 1 
ARHGAP17              0.010   nadrin isoform 1 
ARHGAP17              0.010   nadrin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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