Guide to the Human Genome
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Search of human proteins with 29029591

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]
         (327 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]                   671   0.0  
gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]                   671   0.0  
gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]                    666   0.0  
gi|194097365 FtsJ homolog 3 [Homo sapiens]                            161   8e-40
gi|7019377 FtsJ homolog 2 [Homo sapiens]                              120   2e-27
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap...    50   2e-06
gi|153792086 FtsJ methyltransferase domain containing 1 [Homo sa...    41   0.002
gi|153791865 FtsJ methyltransferase domain containing 1 [Homo sa...    41   0.002
gi|21493045 A-kinase anchor protein 6 [Homo sapiens]                   35   0.12 
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]                 34   0.16 
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]                 34   0.16 
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ...    32   0.77 
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ...    32   0.77 
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ...    31   1.3  
gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]           31   1.7  
gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo ...    31   1.7  
gi|5031887 LIM domain containing preferred translocation partner...    31   1.7  
gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo ...    30   3.8  
gi|197313748 SET domain containing 2 [Homo sapiens]                    30   3.8  
gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens]         30   3.8  
gi|109689723 abl interactor 2 [Homo sapiens]                           29   5.0  
gi|238859653 pleckstrin homology domain containing family A memb...    29   6.5  
gi|238859651 pleckstrin homology domain containing family A memb...    29   6.5  
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    29   6.5  
gi|20336302 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Homo sapi...    29   6.5  
gi|161019170 mucin 5AC [Homo sapiens]                                  28   8.5  
gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]         28   8.5  
gi|242247075 bromodomain containing 9 isoform 2 [Homo sapiens]         28   8.5  
gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Ho...    28   8.5  
gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Ho...    28   8.5  

>gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]
          Length = 327

 Score =  671 bits (1731), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
           MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60

Query: 61  QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
           QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61  QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120

Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
           VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180

Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240
           KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240

Query: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300
           SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT
Sbjct: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300

Query: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327
           FPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327


>gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]
          Length = 327

 Score =  671 bits (1731), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
           MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60

Query: 61  QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
           QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61  QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120

Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
           VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180

Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240
           KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240

Query: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300
           SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT
Sbjct: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300

Query: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327
           FPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327


>gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]
          Length = 329

 Score =  666 bits (1718), Expect = 0.0
 Identities = 327/329 (99%), Positives = 327/329 (99%), Gaps = 2/329 (0%)

Query: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
           MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1   MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60

Query: 61  QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
           QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61  QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120

Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
           VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180

Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY--DFNQLDGPTRIIVPFVTCGD 238
           KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY  DFNQLDGPTRIIVPFVTCGD
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD 240

Query: 239 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 298
           LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
Sbjct: 241 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 300

Query: 299 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 327
           DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 329


>gi|194097365 FtsJ homolog 3 [Homo sapiens]
          Length = 847

 Score =  161 bits (407), Expect = 8e-40
 Identities = 92/234 (39%), Positives = 128/234 (54%), Gaps = 6/234 (2%)

Query: 2   GRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQ 61
           G+  K +RD +Y LAKE G+R+RSAFKL+QL++ FQ  Q     +DLCAAPG W QV ++
Sbjct: 5   GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64

Query: 62  KIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
            +    S  +V VDL  + PLP VV +Q DIT     + + +  K    D+V+ DGAP+V
Sbjct: 65  FM--PVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNV 122

Query: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
                 D Y QA L L AL +A   L  GG F+ K+FR RD   L    Q  F  V   K
Sbjct: 123 GASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATK 182

Query: 182 PRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVT 235
           P++SR+ S E F VCQG+  P+     +     D  + F +++   + +   VT
Sbjct: 183 PQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKFAFKEVEVQAKTVTELVT 232


>gi|7019377 FtsJ homolog 2 [Homo sapiens]
          Length = 246

 Score =  120 bits (301), Expect = 2e-27
 Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 9   RDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS 68
           RD + + AK   +R RSAFKLL++++  Q+ +   R +D  AAPG+WSQV  QK+   G+
Sbjct: 40  RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99

Query: 69  ------GHVVAVDLQAMAPLPGVVQI-QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
                 G V+ VDL  + PL G   +   D+T   T++ I++   G  AD+++ D AP+ 
Sbjct: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159

Query: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
           TG  D+D      L L  L++   +L+PGG F+ K + G     L  +L   F +V   K
Sbjct: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219

Query: 182 PRSSRNSSIEAFAVCQGYDPPEGFI 206
           P +SR  S E + +   Y   +G +
Sbjct: 220 PEASRKESSEVYFLATQYHGRKGTV 244


>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
           sapiens]
          Length = 835

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 38/233 (16%)

Query: 28  KLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL--SQKIGGQGSGHVV------------A 73
           K L  D+E +L        D+CA PG +S+ +   +K   +G G  +            +
Sbjct: 260 KPLVKDREAELLY----FADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYS 315

Query: 74  VDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPAD--------LVVCDGAPDVTGLH 125
              +   P  G   I GD     T  E I  F+    D         ++ DG   V G  
Sbjct: 316 ASSELFEPYYGEGGIDGDGD--ITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQE 373

Query: 126 DVDEYMQAQLLLAALNIATHVLKPGGCFVAK---IFRGRDVTLLYSQLQVFFSSVLCAKP 182
           ++ E +  QLLL    +A  +++ GG F+ K   +F    V L+Y  L   F  V   KP
Sbjct: 374 NLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVY-LLYCCFERVCLFKP 432

Query: 183 RSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQL---DGPTRIIVP 232
            +SR ++ E + VC+G    +  I D+   L   +   NQL   D    ++VP
Sbjct: 433 ITSRPANSERYVVCKGL---KVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVP 482


>gi|153792086 FtsJ methyltransferase domain containing 1 [Homo
           sapiens]
          Length = 770

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 112 LVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD---VTLLYS 168
           LV  DG+ D  G     E + + L    +  A   L  GG FV K+F   +   + L+Y 
Sbjct: 231 LVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYL 290

Query: 169 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLD 215
            L   F  V   KP +S+  + E + VC  Y   E   P LSK  L+
Sbjct: 291 -LNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLN 336


>gi|153791865 FtsJ methyltransferase domain containing 1 [Homo
           sapiens]
          Length = 770

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 112 LVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD---VTLLYS 168
           LV  DG+ D  G     E + + L    +  A   L  GG FV K+F   +   + L+Y 
Sbjct: 231 LVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYL 290

Query: 169 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLD 215
            L   F  V   KP +S+  + E + VC  Y   E   P LSK  L+
Sbjct: 291 -LNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLN 336


>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
          Length = 2319

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 208  DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEY--KYTPPTQ 265
            D+S  L+  + + N LD   + ++P +  G+ S+ D       D  GGS+Y    T P+ 
Sbjct: 1223 DISNKLISLNEESNDLDQELQPVIPSLKLGETSNEDPGYDEEADNHGGSQYASNITAPSS 1282

Query: 266  PPISPPY 272
            P I   Y
Sbjct: 1283 PHIYQVY 1289


>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
          Length = 808

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 28/133 (21%)

Query: 44  RAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQ 103
           R +D+C APG  +  ++Q +  + +G ++A D  A      +  + G++ +L     II 
Sbjct: 383 RILDMCCAPGGKTSYMAQLM--KNTGVILANDANA----ERLKSVVGNLHRLGVTNTIIS 436

Query: 104 HFKGCP-------ADLVVCDGAPDVTGLHDVD---------------EYMQAQLLLAALN 141
           H+ G          D V+ D     TG+   D                ++Q +LLL+A++
Sbjct: 437 HYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAID 496

Query: 142 IATHVLKPGGCFV 154
                 K GG  V
Sbjct: 497 SVNATSKTGGYLV 509


>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
          Length = 808

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 28/133 (21%)

Query: 44  RAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQ 103
           R +D+C APG  +  ++Q +  + +G ++A D  A      +  + G++ +L     II 
Sbjct: 383 RILDMCCAPGGKTSYMAQLM--KNTGVILANDANA----ERLKSVVGNLHRLGVTNTIIS 436

Query: 104 HFKGCP-------ADLVVCDGAPDVTGLHDVD---------------EYMQAQLLLAALN 141
           H+ G          D V+ D     TG+   D                ++Q +LLL+A++
Sbjct: 437 HYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAID 496

Query: 142 IATHVLKPGGCFV 154
                 K GG  V
Sbjct: 497 SVNATSKTGGYLV 509


>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
            sapiens]
          Length = 1188

 Score = 32.0 bits (71), Expect = 0.77
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 261  TPPTQPPISPPYQEACTLKR-KGQLAKEIRPQDCPISRVDTFPQ---PLAAPQ 309
            TPP QPPISP      T  R      +E RP D   +  DT PQ   PL  P+
Sbjct: 962  TPPGQPPISPKKFLPSTANRGLPPRTQESRPSDLGKNAGDTLPQEDLPLTKPE 1014


>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
            sapiens]
          Length = 1189

 Score = 32.0 bits (71), Expect = 0.77
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 261  TPPTQPPISPPYQEACTLKR-KGQLAKEIRPQDCPISRVDTFPQ---PLAAPQ 309
            TPP QPPISP      T  R      +E RP D   +  DT PQ   PL  P+
Sbjct: 963  TPPGQPPISPKKFLPSTANRGLPPRTQESRPSDLGKNAGDTLPQEDLPLTKPE 1015


>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
           [Homo sapiens]
          Length = 912

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 214 LDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPP-TQPPISPPY 272
           LD   D   L+ P     P     +  S DS  + PLD +  +    +PP +QPP SP  
Sbjct: 255 LDLFLDLGDLEEPQ----PVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQD 310

Query: 273 QEACTLKRKGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAPEMEDNE 322
            EA   +          P     S      + LA+PQ     +P +ED E
Sbjct: 311 SEALDFETPSSSLAPQTPDSALAS------ETLASPQSLPPASPLLEDRE 354


>gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]
          Length = 1029

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 32  LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
           L KEF +F    + V L +A    +  L Q +  Q  G    V  Q+      V +I   
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395

Query: 92  ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
           I    + K    + +       + DG  D TG  DVD + + +  L   +I+   +K  G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESMKSPG 448

Query: 152 CFVAKIFRGRDVTLLYSQ 169
            FV     G+   ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466


>gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo
           sapiens]
          Length = 1029

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 32  LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
           L KEF +F    + V L +A    +  L Q +  Q  G    V  Q+      V +I   
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395

Query: 92  ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
           I    + K    + +       + DG  D TG  DVD + + +  L   +I+   +K  G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESMKSPG 448

Query: 152 CFVAKIFRGRDVTLLYSQ 169
            FV     G+   ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466


>gi|5031887 LIM domain containing preferred translocation partner in
           lipoma [Homo sapiens]
          Length = 612

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 243 DSDRSYPLDLEGGSEYKYTPP-------TQPPISPPY----------QEACTLKRKGQLA 285
           DS  S   DLE  S YK  PP         PP+S P           Q   T  +K  L 
Sbjct: 122 DSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTLK 181

Query: 286 KEIRPQ--DCPISRVDTF-PQPLAAPQCHT 312
            +  PQ    P++ + T  PQP   P  +T
Sbjct: 182 PQPAPQAGPIPVAPIGTLKPQPQPVPASYT 211


>gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo
           sapiens]
          Length = 1029

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 32  LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
           L KEF +F    + V L +A    +  L Q +  Q  G    V  Q+      V +I   
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395

Query: 92  ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
           I    + K    + +       + DG  D TG  DVD + + +  L   +I+    K  G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESTKSPG 448

Query: 152 CFVAKIFRGRDVTLLYSQ 169
            FV     G+   ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466


>gi|197313748 SET domain containing 2 [Homo sapiens]
          Length = 2564

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 261 TPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTFPQPL 305
           +PP+ PP  PP  +A TL     + + +     PI+ +   P PL
Sbjct: 185 SPPSSPPPPPPPAQATTLSSPAPVTEPVALPHTPITVLMAAPVPL 229


>gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens]
          Length = 799

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 250 LDLEGGSEYKYTPPT---QPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTF----- 301
           L  E G     TPP    +P  +P  Q  C +  +    +   P DCP  R D       
Sbjct: 174 LRFENGVLTLATPPPHAWEPGAAPAQQPRCLIAPQAGFPQAAHPGDCPELRSDLLLAEPA 233

Query: 302 -PQPLAAPQ 309
            P P  APQ
Sbjct: 234 EPAPAPAPQ 242


>gi|109689723 abl interactor 2 [Homo sapiens]
          Length = 475

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 251 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTFPQP 304
           +++ G   + TPPTQ P SPP     TL R     + + P   P+   D  P P
Sbjct: 159 NMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPY-RTLEPVRPPVVPNDYVPSP 211


>gi|238859653 pleckstrin homology domain containing family A member
           4 isoform 2 [Homo sapiens]
          Length = 583

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 225 GPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP--ISPPYQEACTLKR-- 280
           G  R++ P  T    S     R+   DL       +TP ++PP  +S P   +   +R  
Sbjct: 205 GRPRLLTPSPTTDLHSGLQMRRARSPDL-------FTPLSRPPSPLSLPRPRSAPARRPP 257

Query: 281 --KGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAP 316
              G  A   RP   P+SR+D  P     PQ  TL  P
Sbjct: 258 APSGDTAPPARPHT-PLSRIDVRPPLDWGPQRQTLSRP 294


>gi|238859651 pleckstrin homology domain containing family A member
           4 isoform 1 [Homo sapiens]
          Length = 779

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 225 GPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP--ISPPYQEACTLKR-- 280
           G  R++ P  T    S     R+   DL       +TP ++PP  +S P   +   +R  
Sbjct: 205 GRPRLLTPSPTTDLHSGLQMRRARSPDL-------FTPLSRPPSPLSLPRPRSAPARRPP 257

Query: 281 --KGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAP 316
              G  A   RP   P+SR+D  P     PQ  TL  P
Sbjct: 258 APSGDTAPPARPHT-PLSRIDVRPPLDWGPQRQTLSRP 294


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 201 PPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKY 260
           PP G+ P L       + D  +   P   + P+ +C   +S  +       L G +    
Sbjct: 268 PPCGY-PGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAP-----PLPGVNSSSE 321

Query: 261 TPPTQPPISPPYQ 273
           TPP  PP SP +Q
Sbjct: 322 TPPPLPPKSPSFQ 334


>gi|20336302 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Homo
           sapiens]
          Length = 707

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 198 GYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSE 257
           G+ P + F P    P    S+       P R +V  +T G                GG  
Sbjct: 6   GFPPAKRFRPGSGPPSRAGSFP------PGRQVVMLLTAGSGGR-----------GGGGG 48

Query: 258 YKYTPPTQPPISPPYQEACTLKR--------KGQLAKEIRPQD 292
            +  PP   P + PY EA  L+R        +GQL  ++R  D
Sbjct: 49  RRQQPPLAQPSASPYPEAVELQRRSLPIFQARGQLLAQLRNLD 91


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 261  TPPTQPPISPPYQEACTLKRKGQLAK--EIRPQDCPISRV-----DTFPQPLAAPQCHTL 313
            T P   P+ PP QE+   + +G        RPQ C  +        TFP  L    C T 
Sbjct: 5826 TCPQSLPVCPPGQESICTQEEGDCCPTFRCRPQLCSYNGTFYGVGATFPGALPCHMC-TC 5884

Query: 314  LAPEMEDNEMSC 325
            L+ + +D  + C
Sbjct: 5885 LSGDTQDPTVQC 5896


>gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]
          Length = 597

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 91  DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQA 133
           +++ LS A E  QH  G P+ L V +  PDVT  HD  E++Q+
Sbjct: 549 NLSSLSNASERDQHHLGSPSRLSVGE-QPDVT--HDPYEFLQS 588


>gi|242247075 bromodomain containing 9 isoform 2 [Homo sapiens]
          Length = 544

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 91  DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQA 133
           +++ LS A E  QH  G P+ L V +  PDVT  HD  E++Q+
Sbjct: 496 NLSSLSNASERDQHHLGSPSRLSVGE-QPDVT--HDPYEFLQS 535


>gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Homo
           sapiens]
          Length = 626

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 251 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQ 283
           +LE   EY   P   PP+ PP       K+KGQ
Sbjct: 178 ELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQ 210


>gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Homo
           sapiens]
          Length = 626

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 251 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQ 283
           +LE   EY   P   PP+ PP       K+KGQ
Sbjct: 178 ELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQ 210


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,168,479
Number of Sequences: 37866
Number of extensions: 677622
Number of successful extensions: 2003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 48
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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