Guide to the Human Genome
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Name: FTSJ1 Sequence: fasta or formatted (327aa) NCBI GI: 29029589
Description:

FtsJ homolog 1 isoform b

Referenced in:

tRNA Enzymes

Other entries for this name:
alt mRNA [327aa] FtsJ homolog 1 isoform b
alt prot [329aa] FtsJ homolog 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         25           2
 C cysteine            3.4         11           1
 D aspartate           7.3         24           1
 E glutamate           4.0         13           1
 F phenylalanine       4.0         13           2
 G glycine             7.0         23           2
 H histidine           1.8          6           1
 I isoleucine          4.3         14           2
 K lysine              4.9         16           1
 L leucine            10.1         33           3
 M methionine          1.5          5           1
 N asparagine          1.5          5           1
 P proline             8.3         27           2
 Q glutamine           7.0         23           1
 R arginine            4.6         15           1
 S serine              7.6         25           2
 T threonine           4.3         14           1
 V valine              6.7         22           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FtsJ homolog 1 isoform b 
FTSJ1                 1.000   FtsJ homolog 1 isoform b 
FTSJ1                 0.992   FtsJ homolog 1 isoform a 
FTSJ3                 0.211   FtsJ homolog 3 
FTSJ2                 0.147   FtsJ homolog 2 
FTSJD2                0.039   FtsJ methyltransferase domain containing 2 
FTSJD1                0.025   FtsJ methyltransferase domain containing 1 
FTSJD1                0.025   FtsJ methyltransferase domain containing 1 
AKAP6                 0.015   A-kinase anchor protein 6 
NOP2                  0.014   nucleolar protein 1, 120kDa 
NOP2                  0.014   nucleolar protein 1, 120kDa 
INPP5D                0.011   SH2 containing inositol phosphatase isoform b 
INPP5D                0.011   SH2 containing inositol phosphatase isoform a 
TUT1                  0.009   terminal uridylyl transferase 1, U6 snRNA-specific ...
LOC100293597          0.009   PREDICTED: similar to hCG2036697 
LOC100291435          0.009   PREDICTED: hypothetical protein XP_002347033 
LPP                   0.009   LIM domain containing preferred translocation partner...
LOC100287651          0.008   PREDICTED: hypothetical protein XP_002342894 
SETD2                 0.008   SET domain containing 2 
ZXDA                  0.008   zinc finger, X-linked, duplicated A 
ABI2                  0.006   abl interactor 2 
PLEKHA4               0.006   pleckstrin homology domain containing family A memb...
PLEKHA4               0.006   pleckstrin homology domain containing family A memb...
WIPF3                 0.006   WAS/WASL interacting protein family, member 3 [Homo...
DHX33                 0.006   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
MUC5AC                0.005   mucin 5AC 
BRD9                  0.005   bromodomain containing 9 isoform 1 
BRD9                  0.005   bromodomain containing 9 isoform 2 
C10orf134             0.005   PREDICTED: chromosome 10 open reading frame 134 [Ho...
C10orf134             0.005   PREDICTED: chromosome 10 open reading frame 134 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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