Guide to the Human Genome
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Name: FTSJD1 Sequence: fasta or formatted (770aa) NCBI GI: 153792086
Description:

FtsJ methyltransferase domain containing 1

Referenced in:

tRNA Enzymes

Other entries for this name:
alt mRNA [770aa] FtsJ methyltransferase domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         39           2
 C cysteine            4.3         33           2
 D aspartate           3.9         30           2
 E glutamate           6.5         50           2
 F phenylalanine       6.5         50           2
 G glycine             4.3         33           2
 H histidine           4.4         34           2
 I isoleucine          4.5         35           2
 K lysine              6.4         49           2
 L leucine            13.2        102           2
 M methionine          2.3         18           2
 N asparagine          5.8         45           2
 P proline             4.0         31           1
 Q glutamine           4.0         31           2
 R arginine            3.1         24           1
 S serine              7.7         59           2
 T threonine           4.8         37           2
 V valine              5.1         39           3
 W tryptophan          1.7         13           2
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FtsJ methyltransferase domain containing 1 
FTSJD1                1.000   FtsJ methyltransferase domain containing 1 
FTSJD2                0.044   FtsJ methyltransferase domain containing 2 
FTSJ1                 0.010   FtsJ homolog 1 isoform b 
FTSJ1                 0.010   FtsJ homolog 1 isoform b 
FTSJ1                 0.010   FtsJ homolog 1 isoform a 
FTSJ3                 0.006   FtsJ homolog 3 
TBC1D2                0.004   TBC1 domain family, member 2 
CDH19                 0.004   cadherin 19, type 2 preproprotein 
KCNH1                 0.004   potassium voltage-gated channel, subfamily H, member ...
NLRP5                 0.004   NACHT, LRR and PYD containing protein 5 
FTSJ2                 0.004   FtsJ homolog 2 
WDFY3                 0.004   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
ZNF610                0.004   zinc finger protein 610 isoform b 
ZNF610                0.004   zinc finger protein 610 isoform a 
ZNF610                0.004   zinc finger protein 610 isoform a 
ZNF610                0.004   zinc finger protein 610 isoform a 
SIAH1                 0.003   seven in absentia homolog 1 isoform b 
SIAH1                 0.003   seven in absentia homolog 1 isoform a 
KCNH1                 0.003   potassium voltage-gated channel, subfamily H, member...
TBCEL                 0.003   tubulin folding cofactor E-like 
TBCEL                 0.003   tubulin folding cofactor E-like 
CAT                   0.003   catalase 
LOC100288030          0.003   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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