Guide to the Human Genome
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Name: BRD9 Sequence: fasta or formatted (544aa) NCBI GI: 242247075
Description:

bromodomain containing 9 isoform 2

Referenced in:

Bromodomain Family

Other entries for this name:
alt prot [597aa] bromodomain containing 9 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         35           2
 C cysteine            0.7          4           1
 D aspartate           6.8         37           2
 E glutamate           7.2         39           3
 F phenylalanine       3.5         19           2
 G glycine             6.2         34           2
 H histidine           2.6         14           2
 I isoleucine          2.2         12           2
 K lysine              7.2         39           2
 L leucine             8.6         47           2
 M methionine          3.7         20           2
 N asparagine          3.1         17           2
 P proline             5.1         28           2
 Q glutamine           3.1         17           1
 R arginine            7.4         40           5
 S serine             11.4         62           4
 T threonine           6.1         33           2
 V valine              5.7         31           2
 W tryptophan          0.7          4           1
 Y tyrosine            2.2         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bromodomain containing 9 isoform 2 
BRD9                  0.810   bromodomain containing 9 isoform 1 
BRD7                  0.181   bromodomain containing 7 
ZDHHC11B              0.058   PREDICTED: zinc finger, DHHC-type containing 11B [H...
BRD1                  0.046   bromodomain containing protein 1 
BRPF3                 0.038   bromodomain and PHD finger containing, 3 
BRD4                  0.037   bromodomain-containing protein 4 isoform short 
BRD4                  0.037   bromodomain-containing protein 4 isoform long 
BRPF1                 0.034   bromodomain and PHD finger-containing protein 1 isof...
BRD8                  0.032   bromodomain containing 8 isoform 3 
BRD8                  0.032   bromodomain containing 8 isoform 2 
BRD8                  0.032   bromodomain containing 8 isoform 1 
BAZ2A                 0.031   bromodomain adjacent to zinc finger domain, 2A [Homo...
BAZ2B                 0.030   bromodomain adjacent to zinc finger domain, 2B [Homo...
BRD2                  0.029   bromodomain containing 2 
BRD2                  0.029   bromodomain containing 2 
BRD3                  0.029   bromodomain containing protein 3 
BRPF1                 0.029   bromodomain and PHD finger-containing protein 1 isof...
PBRM1                 0.028   polybromo 1 isoform 1 
PBRM1                 0.028   polybromo 1 isoform 2 
PBRM1                 0.028   polybromo 1 isoform 4 
KAT2B                 0.027   K(lysine) acetyltransferase 2B 
BPTF                  0.027   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.027   bromodomain PHD finger transcription factor isoform ...
TAF1                  0.026   TBP-associated factor 1 isoform 2 
TAF1                  0.026   TBP-associated factor 1 isoform 1 
SMARCA4               0.025   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.025   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.025   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.025   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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