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Search of human proteins with 29029589
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]
(327 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens] 671 0.0
gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens] 671 0.0
gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens] 666 0.0
gi|194097365 FtsJ homolog 3 [Homo sapiens] 161 8e-40
gi|7019377 FtsJ homolog 2 [Homo sapiens] 120 2e-27
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap... 50 2e-06
gi|153792086 FtsJ methyltransferase domain containing 1 [Homo sa... 41 0.002
gi|153791865 FtsJ methyltransferase domain containing 1 [Homo sa... 41 0.002
gi|21493045 A-kinase anchor protein 6 [Homo sapiens] 35 0.12
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens] 34 0.16
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens] 34 0.16
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ... 32 0.77
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ... 32 0.77
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 31 1.3
gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens] 31 1.7
gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo ... 31 1.7
gi|5031887 LIM domain containing preferred translocation partner... 31 1.7
gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo ... 30 3.8
gi|197313748 SET domain containing 2 [Homo sapiens] 30 3.8
gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens] 30 3.8
gi|109689723 abl interactor 2 [Homo sapiens] 29 5.0
gi|238859653 pleckstrin homology domain containing family A memb... 29 6.5
gi|238859651 pleckstrin homology domain containing family A memb... 29 6.5
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 29 6.5
gi|20336302 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Homo sapi... 29 6.5
gi|161019170 mucin 5AC [Homo sapiens] 28 8.5
gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens] 28 8.5
gi|242247075 bromodomain containing 9 isoform 2 [Homo sapiens] 28 8.5
gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Ho... 28 8.5
gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Ho... 28 8.5
>gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 671 bits (1731), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240
KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240
Query: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300
SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT
Sbjct: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300
Query: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327
FPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327
>gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 671 bits (1731), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240
KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLS 240
Query: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300
SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT
Sbjct: 241 SYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDT 300
Query: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327
FPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 FPQPLAAPQCHTLLAPEMEDNEMSCSP 327
>gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]
Length = 329
Score = 666 bits (1718), Expect = 0.0
Identities = 327/329 (99%), Positives = 327/329 (99%), Gaps = 2/329 (0%)
Query: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY--DFNQLDGPTRIIVPFVTCGD 238
KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY DFNQLDGPTRIIVPFVTCGD
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD 240
Query: 239 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 298
LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
Sbjct: 241 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 300
Query: 299 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 327
DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 329
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 161 bits (407), Expect = 8e-40
Identities = 92/234 (39%), Positives = 128/234 (54%), Gaps = 6/234 (2%)
Query: 2 GRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQ 61
G+ K +RD +Y LAKE G+R+RSAFKL+QL++ FQ Q +DLCAAPG W QV ++
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64
Query: 62 KIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
+ S +V VDL + PLP VV +Q DIT + + + K D+V+ DGAP+V
Sbjct: 65 FM--PVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNV 122
Query: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
D Y QA L L AL +A L GG F+ K+FR RD L Q F V K
Sbjct: 123 GASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATK 182
Query: 182 PRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVT 235
P++SR+ S E F VCQG+ P+ + D + F +++ + + VT
Sbjct: 183 PQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKFAFKEVEVQAKTVTELVT 232
>gi|7019377 FtsJ homolog 2 [Homo sapiens]
Length = 246
Score = 120 bits (301), Expect = 2e-27
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 9 RDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS 68
RD + + AK +R RSAFKLL++++ Q+ + R +D AAPG+WSQV QK+ G+
Sbjct: 40 RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99
Query: 69 ------GHVVAVDLQAMAPLPGVVQI-QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
G V+ VDL + PL G + D+T T++ I++ G AD+++ D AP+
Sbjct: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159
Query: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
TG D+D L L L++ +L+PGG F+ K + G L +L F +V K
Sbjct: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219
Query: 182 PRSSRNSSIEAFAVCQGYDPPEGFI 206
P +SR S E + + Y +G +
Sbjct: 220 PEASRKESSEVYFLATQYHGRKGTV 244
>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
sapiens]
Length = 835
Score = 50.4 bits (119), Expect = 2e-06
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 28 KLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL--SQKIGGQGSGHVV------------A 73
K L D+E +L D+CA PG +S+ + +K +G G + +
Sbjct: 260 KPLVKDREAELLY----FADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYS 315
Query: 74 VDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPAD--------LVVCDGAPDVTGLH 125
+ P G I GD T E I F+ D ++ DG V G
Sbjct: 316 ASSELFEPYYGEGGIDGDGD--ITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQE 373
Query: 126 DVDEYMQAQLLLAALNIATHVLKPGGCFVAK---IFRGRDVTLLYSQLQVFFSSVLCAKP 182
++ E + QLLL +A +++ GG F+ K +F V L+Y L F V KP
Sbjct: 374 NLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVY-LLYCCFERVCLFKP 432
Query: 183 RSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQL---DGPTRIIVP 232
+SR ++ E + VC+G + I D+ L + NQL D ++VP
Sbjct: 433 ITSRPANSERYVVCKGL---KVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVP 482
>gi|153792086 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 112 LVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD---VTLLYS 168
LV DG+ D G E + + L + A L GG FV K+F + + L+Y
Sbjct: 231 LVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYL 290
Query: 169 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLD 215
L F V KP +S+ + E + VC Y E P LSK L+
Sbjct: 291 -LNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLN 336
>gi|153791865 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 112 LVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD---VTLLYS 168
LV DG+ D G E + + L + A L GG FV K+F + + L+Y
Sbjct: 231 LVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYL 290
Query: 169 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLD 215
L F V KP +S+ + E + VC Y E P LSK L+
Sbjct: 291 -LNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLN 336
>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
Length = 2319
Score = 34.7 bits (78), Expect = 0.12
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 208 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEY--KYTPPTQ 265
D+S L+ + + N LD + ++P + G+ S+ D D GGS+Y T P+
Sbjct: 1223 DISNKLISLNEESNDLDQELQPVIPSLKLGETSNEDPGYDEEADNHGGSQYASNITAPSS 1282
Query: 266 PPISPPY 272
P I Y
Sbjct: 1283 PHIYQVY 1289
>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 34.3 bits (77), Expect = 0.16
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 44 RAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQ 103
R +D+C APG + ++Q + + +G ++A D A + + G++ +L II
Sbjct: 383 RILDMCCAPGGKTSYMAQLM--KNTGVILANDANA----ERLKSVVGNLHRLGVTNTIIS 436
Query: 104 HFKGCP-------ADLVVCDGAPDVTGLHDVD---------------EYMQAQLLLAALN 141
H+ G D V+ D TG+ D ++Q +LLL+A++
Sbjct: 437 HYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAID 496
Query: 142 IATHVLKPGGCFV 154
K GG V
Sbjct: 497 SVNATSKTGGYLV 509
>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 34.3 bits (77), Expect = 0.16
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 44 RAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQ 103
R +D+C APG + ++Q + + +G ++A D A + + G++ +L II
Sbjct: 383 RILDMCCAPGGKTSYMAQLM--KNTGVILANDANA----ERLKSVVGNLHRLGVTNTIIS 436
Query: 104 HFKGCP-------ADLVVCDGAPDVTGLHDVD---------------EYMQAQLLLAALN 141
H+ G D V+ D TG+ D ++Q +LLL+A++
Sbjct: 437 HYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAID 496
Query: 142 IATHVLKPGGCFV 154
K GG V
Sbjct: 497 SVNATSKTGGYLV 509
>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
sapiens]
Length = 1188
Score = 32.0 bits (71), Expect = 0.77
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 261 TPPTQPPISPPYQEACTLKR-KGQLAKEIRPQDCPISRVDTFPQ---PLAAPQ 309
TPP QPPISP T R +E RP D + DT PQ PL P+
Sbjct: 962 TPPGQPPISPKKFLPSTANRGLPPRTQESRPSDLGKNAGDTLPQEDLPLTKPE 1014
>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
sapiens]
Length = 1189
Score = 32.0 bits (71), Expect = 0.77
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 261 TPPTQPPISPPYQEACTLKR-KGQLAKEIRPQDCPISRVDTFPQ---PLAAPQ 309
TPP QPPISP T R +E RP D + DT PQ PL P+
Sbjct: 963 TPPGQPPISPKKFLPSTANRGLPPRTQESRPSDLGKNAGDTLPQEDLPLTKPE 1015
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 31.2 bits (69), Expect = 1.3
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 214 LDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPP-TQPPISPPY 272
LD D L+ P P + S DS + PLD + + +PP +QPP SP
Sbjct: 255 LDLFLDLGDLEEPQ----PVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQD 310
Query: 273 QEACTLKRKGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAPEMEDNE 322
EA + P S + LA+PQ +P +ED E
Sbjct: 311 SEALDFETPSSSLAPQTPDSALAS------ETLASPQSLPPASPLLEDRE 354
>gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]
Length = 1029
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 32 LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
L KEF +F + V L +A + L Q + Q G V Q+ V +I
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395
Query: 92 ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
I + K + + + DG D TG DVD + + + L +I+ +K G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESMKSPG 448
Query: 152 CFVAKIFRGRDVTLLYSQ 169
FV G+ ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466
>gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo
sapiens]
Length = 1029
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 32 LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
L KEF +F + V L +A + L Q + Q G V Q+ V +I
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395
Query: 92 ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
I + K + + + DG D TG DVD + + + L +I+ +K G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESMKSPG 448
Query: 152 CFVAKIFRGRDVTLLYSQ 169
FV G+ ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466
>gi|5031887 LIM domain containing preferred translocation partner in
lipoma [Homo sapiens]
Length = 612
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 243 DSDRSYPLDLEGGSEYKYTPP-------TQPPISPPY----------QEACTLKRKGQLA 285
DS S DLE S YK PP PP+S P Q T +K L
Sbjct: 122 DSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTLK 181
Query: 286 KEIRPQ--DCPISRVDTF-PQPLAAPQCHT 312
+ PQ P++ + T PQP P +T
Sbjct: 182 PQPAPQAGPIPVAPIGTLKPQPQPVPASYT 211
>gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo
sapiens]
Length = 1029
Score = 29.6 bits (65), Expect = 3.8
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 32 LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
L KEF +F + V L +A + L Q + Q G V Q+ V +I
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395
Query: 92 ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
I + K + + + DG D TG DVD + + + L +I+ K G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESTKSPG 448
Query: 152 CFVAKIFRGRDVTLLYSQ 169
FV G+ ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 29.6 bits (65), Expect = 3.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 261 TPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTFPQPL 305
+PP+ PP PP +A TL + + + PI+ + P PL
Sbjct: 185 SPPSSPPPPPPPAQATTLSSPAPVTEPVALPHTPITVLMAAPVPL 229
>gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens]
Length = 799
Score = 29.6 bits (65), Expect = 3.8
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 250 LDLEGGSEYKYTPPT---QPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTF----- 301
L E G TPP +P +P Q C + + + P DCP R D
Sbjct: 174 LRFENGVLTLATPPPHAWEPGAAPAQQPRCLIAPQAGFPQAAHPGDCPELRSDLLLAEPA 233
Query: 302 -PQPLAAPQ 309
P P APQ
Sbjct: 234 EPAPAPAPQ 242
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 29.3 bits (64), Expect = 5.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 251 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTFPQP 304
+++ G + TPPTQ P SPP TL R + + P P+ D P P
Sbjct: 159 NMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPY-RTLEPVRPPVVPNDYVPSP 211
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 28.9 bits (63), Expect = 6.5
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 225 GPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP--ISPPYQEACTLKR-- 280
G R++ P T S R+ DL +TP ++PP +S P + +R
Sbjct: 205 GRPRLLTPSPTTDLHSGLQMRRARSPDL-------FTPLSRPPSPLSLPRPRSAPARRPP 257
Query: 281 --KGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAP 316
G A RP P+SR+D P PQ TL P
Sbjct: 258 APSGDTAPPARPHT-PLSRIDVRPPLDWGPQRQTLSRP 294
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 28.9 bits (63), Expect = 6.5
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 225 GPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP--ISPPYQEACTLKR-- 280
G R++ P T S R+ DL +TP ++PP +S P + +R
Sbjct: 205 GRPRLLTPSPTTDLHSGLQMRRARSPDL-------FTPLSRPPSPLSLPRPRSAPARRPP 257
Query: 281 --KGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAP 316
G A RP P+SR+D P PQ TL P
Sbjct: 258 APSGDTAPPARPHT-PLSRIDVRPPLDWGPQRQTLSRP 294
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 201 PPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKY 260
PP G+ P L + D + P + P+ +C +S + L G +
Sbjct: 268 PPCGY-PGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAP-----PLPGVNSSSE 321
Query: 261 TPPTQPPISPPYQ 273
TPP PP SP +Q
Sbjct: 322 TPPPLPPKSPSFQ 334
>gi|20336302 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Homo
sapiens]
Length = 707
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 198 GYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSE 257
G+ P + F P P S+ P R +V +T G GG
Sbjct: 6 GFPPAKRFRPGSGPPSRAGSFP------PGRQVVMLLTAGSGGR-----------GGGGG 48
Query: 258 YKYTPPTQPPISPPYQEACTLKR--------KGQLAKEIRPQD 292
+ PP P + PY EA L+R +GQL ++R D
Sbjct: 49 RRQQPPLAQPSASPYPEAVELQRRSLPIFQARGQLLAQLRNLD 91
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.5 bits (62), Expect = 8.5
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 261 TPPTQPPISPPYQEACTLKRKGQLAK--EIRPQDCPISRV-----DTFPQPLAAPQCHTL 313
T P P+ PP QE+ + +G RPQ C + TFP L C T
Sbjct: 5826 TCPQSLPVCPPGQESICTQEEGDCCPTFRCRPQLCSYNGTFYGVGATFPGALPCHMC-TC 5884
Query: 314 LAPEMEDNEMSC 325
L+ + +D + C
Sbjct: 5885 LSGDTQDPTVQC 5896
>gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]
Length = 597
Score = 28.5 bits (62), Expect = 8.5
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 91 DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQA 133
+++ LS A E QH G P+ L V + PDVT HD E++Q+
Sbjct: 549 NLSSLSNASERDQHHLGSPSRLSVGE-QPDVT--HDPYEFLQS 588
>gi|242247075 bromodomain containing 9 isoform 2 [Homo sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 8.5
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 91 DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQA 133
+++ LS A E QH G P+ L V + PDVT HD E++Q+
Sbjct: 496 NLSSLSNASERDQHHLGSPSRLSVGE-QPDVT--HDPYEFLQS 535
>gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Homo
sapiens]
Length = 626
Score = 28.5 bits (62), Expect = 8.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 251 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQ 283
+LE EY P PP+ PP K+KGQ
Sbjct: 178 ELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQ 210
>gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Homo
sapiens]
Length = 626
Score = 28.5 bits (62), Expect = 8.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 251 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQ 283
+LE EY P PP+ PP K+KGQ
Sbjct: 178 ELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQ 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,168,479
Number of Sequences: 37866
Number of extensions: 677622
Number of successful extensions: 2003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 48
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.