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Search of human proteins with 28882045
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28882045 interferon, epsilon [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28882045 interferon, epsilon [Homo sapiens] 413 e-116
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 114 4e-26
gi|13128950 interferon, alpha 1 [Homo sapiens] 111 5e-25
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 111 5e-25
gi|170763491 interferon, alpha 14 [Homo sapiens] 110 1e-24
gi|4504589 interferon, alpha 10 [Homo sapiens] 109 2e-24
gi|10880985 interferon, alpha 17 [Homo sapiens] 107 7e-24
gi|4504605 interferon, omega 1 [Homo sapiens] 107 9e-24
gi|10835103 interferon, alpha 4 [Homo sapiens] 106 1e-23
gi|71143135 interferon, alpha 7 [Homo sapiens] 103 1e-22
gi|4504597 interferon, alpha 5 [Homo sapiens] 102 2e-22
gi|11067751 interferon, alpha 2 [Homo sapiens] 102 2e-22
gi|42476083 interferon, alpha 8 [Homo sapiens] 101 5e-22
gi|11128015 interferon, alpha 6 [Homo sapiens] 101 5e-22
gi|169791013 interferon, alpha 21 [Homo sapiens] 100 9e-22
gi|4504593 interferon, alpha 16 [Homo sapiens] 100 1e-21
gi|112789564 interferon kappa precursor [Homo sapiens] 84 9e-17
gi|53729363 leucine rich repeat and sterile alpha motif containi... 30 1.1
gi|53729361 leucine rich repeat and sterile alpha motif containi... 30 1.1
gi|53729359 leucine rich repeat and sterile alpha motif containi... 30 1.1
gi|91208420 bassoon protein [Homo sapiens] 30 1.5
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 30 1.9
gi|150170670 piccolo isoform 2 [Homo sapiens] 30 1.9
gi|150378539 piccolo isoform 1 [Homo sapiens] 30 1.9
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 29 2.5
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 29 2.5
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 29 2.5
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 29 2.5
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 29 2.5
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 413 bits (1061), Expect = e-116
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF 60
MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
Sbjct: 1 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF 60
Query: 61 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL 120
LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
Sbjct: 61 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL 120
Query: 121 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF 180
EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF
Sbjct: 121 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF 180
Query: 181 SLTEKLSKQGRPLNDMKQELTTEFRSPR 208
SLTEKLSKQGRPLNDMKQELTTEFRSPR
Sbjct: 181 SLTEKLSKQGRPLNDMKQELTTEFRSPR 208
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 114 bits (286), Expect = 4e-26
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 11 LVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQ 70
L+L STT S+ L+ F QR N + KLL +L ++ CL R NF +P++ Q
Sbjct: 11 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNFDIPEEIKQLQ 69
Query: 71 QYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEK 130
Q+QK ++EMLQ IF++FR + S GW E E L ++ Q+ +L+ ++ + EK
Sbjct: 70 QFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEK 129
Query: 131 LSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLT 183
T G L +K Y+ RI YL+ ++YS CAW IV+VEI R +F+ LT
Sbjct: 130 EDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLT 182
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 111 bits (277), Expect = 5e-25
Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F PQ+ Q+QK +++LHE++QQIF+LF
Sbjct: 34 NRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTT 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGT--LGSDNLRLQVKMYFRRIH 152
S W+E+ +KF +L+QQL LEA + ++ E++ T + +D++ L VK YFRRI
Sbjct: 94 KDSSAAWDEDLLDKFCTELYQQLNDLEACV-MQEERVGETPLMNADSI-LAVKKYFRRIT 151
Query: 153 DYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
YL + YS CAW +V+ EI R L +L E+L ++
Sbjct: 152 LYLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERLRRK 188
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 111 bits (277), Expect = 5e-25
Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F PQ+ Q+QK +++LHE++QQIF+LF
Sbjct: 35 NRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTT 94
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGT--LGSDNLRLQVKMYFRRIH 152
S W+E+ +KF +L+QQL LEA + ++ E++ T + +D++ L VK YFRRI
Sbjct: 95 KDSSAAWDEDLLDKFCTELYQQLNDLEACV-MQEERVGETPLMNADSI-LAVKKYFRRIT 152
Query: 153 DYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
YL + YS CAW +V+ EI R L +L E+L ++
Sbjct: 153 LYLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERLRRK 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 110 bits (274), Expect = 1e-24
Identities = 59/155 (38%), Positives = 90/155 (58%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L L+ +++ +S CL R +F PQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S W+E EKF I+L QQ+ LEA + E L +++ L VK YF+RI Y
Sbjct: 94 KNSSAAWDETLLEKFYIELFQQMNDLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R L F +L ++L ++
Sbjct: 154 LMEKKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK 188
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 109 bits (272), Expect = 2e-24
Identities = 59/155 (38%), Positives = 91/155 (58%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F +PQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRALILLGQMGRISPFSCLKDRHDFRIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S WE++ EKF +L+QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 94 EDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R L F +L ++L ++
Sbjct: 154 LIERKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK 188
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 107 bits (267), Expect = 7e-24
Identities = 60/155 (38%), Positives = 90/155 (58%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F LPQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRALILLAQMGRISPFSCLKDRHDFGLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S WE++ EKF +L+QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 94 EDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVGMEETPLMNEDSILAVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R L F +L + L ++
Sbjct: 154 LTEKKYSPCAWEVVRAEIMRSLSFSTNLQKILRRK 188
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 107 bits (266), Expect = 9e-24
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 34 VNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFR 93
+++ +L LL++++ +S CL R++F PQ+ + Q QK H +++LHEMLQQIFSLF
Sbjct: 33 LSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
Query: 94 ANISLDGWEENHTEKFLIQLHQQLEYLEA--LMGLEAEKLSGTLGSDNLRLQVKMYFRRI 151
S W ++ LHQQL++LE L + + +G + S L L + YF+ I
Sbjct: 93 TERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPALTL--RRYFQGI 150
Query: 152 HDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQGRPL 193
YL+ + YS CAW +V++EI + LF ++ E+L + R L
Sbjct: 151 RVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKDRDL 192
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 106 bits (265), Expect = 1e-23
Identities = 58/155 (37%), Positives = 90/155 (58%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F P++ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRALILLAQMGRISHFSCLKDRHDFGFPEEEFDGHQFQKAQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S WE++ EKF +L+QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 94 EDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R L F +L ++L ++
Sbjct: 154 LTEKKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK 188
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 103 bits (257), Expect = 1e-22
Identities = 57/155 (36%), Positives = 87/155 (56%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R F P++ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRALILLAQMGRISPFSCLKDRHEFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S WE++ EKF +L+QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 94 EDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDFILAVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R F +L + L ++
Sbjct: 154 LMEKKYSPCAWEVVRAEIMRSFSFSTNLKKGLRRK 188
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 102 bits (255), Expect = 2e-22
Identities = 56/155 (36%), Positives = 86/155 (55%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L ++ ++ +S CL R +F PQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRTLMIMAQMGRISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S W+E +KF +L+QQL LEA M E L + + L V+ YF+RI Y
Sbjct: 94 KDSSATWDETLLDKFYTELYQQLNDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R +L E+L ++
Sbjct: 154 LTEKKYSPCAWEVVRAEIMRSFSLSANLQERLRRK 188
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 102 bits (254), Expect = 2e-22
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
++ +L LL +++ +S+ CL R +F PQ+ Q+QK T+ +LHEM+QQIF+LF
Sbjct: 34 SRRTLMLLAQMRRISLFSCLKDRHDFGFPQEEFG-NQFQKAETIPVLHEMIQQIFNLFST 92
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S W+E +KF +L+QQL LEA + L ++ L V+ YF+RI Y
Sbjct: 93 KDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLY 152
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKL 186
L+ + YS CAW +V+ EI R +L E L
Sbjct: 153 LKEKKYSPCAWEVVRAEIMRSFSLSTNLQESL 184
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 101 bits (251), Expect = 5e-22
Identities = 54/155 (34%), Positives = 88/155 (56%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL +++ +S CL R +F PQ+ +Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRALILLAQMRRISPFSCLKDRHDFEFPQEEFDDKQFQKAQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S +E ++F I+L QQL LE+ + E + L ++ L V+ YF+RI Y
Sbjct: 94 KDSSAALDETLLDEFYIELDQQLNDLESCVMQEVGVIESPLMYEDSILAVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS+CAW +V+ EI R +L ++L +
Sbjct: 154 LTEKKYSSCAWEVVRAEIMRSFSLSINLQKRLKSK 188
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 101 bits (251), Expect = 5e-22
Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 3/180 (1%)
Query: 11 LVLLASTTIFSLDLKLIIFQQRQV-NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSP 69
LV+L+ + SLD L Q + ++ ++ LL +++ +S+ CL R +F PQ+
Sbjct: 11 LVVLSCKSSCSLDCDLP--QTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFRFPQEEFDG 68
Query: 70 QQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAE 129
Q+QK +++LHE++QQ F+LF S W+E +K +L+QQL LEA + E
Sbjct: 69 NQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQEVW 128
Query: 130 KLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L +++ L V+ YF+RI YL + YS CAW +V+ EI R +L E+L ++
Sbjct: 129 VGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRNLQERLRRK 188
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 100 bits (249), Expect = 9e-22
Identities = 58/155 (37%), Positives = 85/155 (54%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F PQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 34 NRRALILLAQMGRISPFSCLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S WE++ EKF +L+QQL LEA + E L + + L VK YF+RI Y
Sbjct: 94 KDSSATWEQSLLEKFSTELNQQLNDLEACVIQEVGVEETPLMNVDSILAVKKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R E+L ++
Sbjct: 154 LTEKKYSPCAWEVVRAEIMRSFSLSKIFQERLRRK 188
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 100 bits (248), Expect = 1e-21
Identities = 57/155 (36%), Positives = 85/155 (54%)
Query: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
N+ +L LL ++ +S CL R +F PQ+ Q+QK ++ HEM+QQ F+LF
Sbjct: 34 NRRALILLAQMGRISHFSCLKDRYDFGFPQEVFDGNQFQKAQAISAFHEMIQQTFNLFST 93
Query: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
S W+E +KF I+L QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 94 KDSSAAWDETLLDKFYIELFQQLNDLEACVTQEVGVEEIALMNEDSILAVRKYFQRITLY 153
Query: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
L + YS CAW +V+ EI R F +L + L ++
Sbjct: 154 LMGKKYSPCAWEVVRAEIMRSFSFSTNLQKGLRRK 188
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 84.0 bits (206), Expect = 9e-17
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 1 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF 60
MI K + +L+ + SLD L+ R+V ++L+ L+ + +CL F
Sbjct: 7 MIQKCLWLEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAF 66
Query: 61 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL 120
LPQ+ L Q K +EM Q F++F + + W+E H ++ I L QQ EYL
Sbjct: 67 ELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFSQH-TFKYWKERHLKQIQIGLDQQAEYL 125
Query: 121 EALMGLEA-------EKLSGTLGSDNLR------LQVKMYFRRIHDYLENQDYSTCAWAI 167
+ + E + R L+++ YF RI ++L+ + YS CAW I
Sbjct: 126 NQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEI 185
Query: 168 VQVEISRCLFFVFSLT 183
V+VEI RCL++ + T
Sbjct: 186 VRVEIRRCLYYFYKFT 201
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 1.1
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 31/195 (15%)
Query: 15 ASTTIFSLDLKLIIFQQ-RQVNQESLKLLNKLQTLS-IQQCLPHR-KNFLLPQKSLSPQQ 71
+S + SL+ + I +Q + QE + L + S +QQ L KN L+ S +Q
Sbjct: 352 SSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQ 411
Query: 72 ---YQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEA 128
Q ++A + E QQI S W++ K + Q+ Q+ +A EA
Sbjct: 412 NLVQQACSSMAEMDERFQQILS----------WQQMDQNKAISQILQESAMQKA--AFEA 459
Query: 129 EKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSK 188
++ L +R Q+K+ T + Q+E+ R SL E +S+
Sbjct: 460 LQVKKDLMHRQIRSQIKLI-------------ETELLQLTQLELKRKSLDTESLQEMISE 506
Query: 189 QGRPLNDMKQELTTE 203
Q L+ + Q+L E
Sbjct: 507 QRWALSSLLQQLLKE 521
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 1.1
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 31/195 (15%)
Query: 15 ASTTIFSLDLKLIIFQQ-RQVNQESLKLLNKLQTLS-IQQCLPHR-KNFLLPQKSLSPQQ 71
+S + SL+ + I +Q + QE + L + S +QQ L KN L+ S +Q
Sbjct: 352 SSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQ 411
Query: 72 ---YQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEA 128
Q ++A + E QQI S W++ K + Q+ Q+ +A EA
Sbjct: 412 NLVQQACSSMAEMDERFQQILS----------WQQMDQNKAISQILQESAMQKA--AFEA 459
Query: 129 EKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSK 188
++ L +R Q+K+ T + Q+E+ R SL E +S+
Sbjct: 460 LQVKKDLMHRQIRSQIKLI-------------ETELLQLTQLELKRKSLDTESLQEMISE 506
Query: 189 QGRPLNDMKQELTTE 203
Q L+ + Q+L E
Sbjct: 507 QRWALSSLLQQLLKE 521
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 1.1
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 31/195 (15%)
Query: 15 ASTTIFSLDLKLIIFQQ-RQVNQESLKLLNKLQTLS-IQQCLPHR-KNFLLPQKSLSPQQ 71
+S + SL+ + I +Q + QE + L + S +QQ L KN L+ S +Q
Sbjct: 352 SSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQ 411
Query: 72 ---YQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEA 128
Q ++A + E QQI S W++ K + Q+ Q+ +A EA
Sbjct: 412 NLVQQACSSMAEMDERFQQILS----------WQQMDQNKAISQILQESAMQKA--AFEA 459
Query: 129 EKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSK 188
++ L +R Q+K+ T + Q+E+ R SL E +S+
Sbjct: 460 LQVKKDLMHRQIRSQIKLI-------------ETELLQLTQLELKRKSLDTESLQEMISE 506
Query: 189 QGRPLNDMKQELTTE 203
Q L+ + Q+L E
Sbjct: 507 QRWALSSLLQQLLKE 521
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.0 bits (66), Expect = 1.5
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 30 QQRQVNQESLKL------LNKLQTLSIQQCLP--------HRKNF-LLPQKSLSPQQYQK 74
+QR+ ++ L+L L KL+ L +Q+ L HR+ LL Q+ L Q K
Sbjct: 2364 RQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQRELQELQTIK 2423
Query: 75 GHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLE 118
H L E Q F+L R ++ + ++ QL QQLE
Sbjct: 2424 HHVLQQQQEERQAQFALQREQLAQQRLQLEQIQQLQQQLQQQLE 2467
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 29.6 bits (65), Expect = 1.9
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 30 QQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIF 89
+QR ++ SL+ ++ Q +++ + F+ P K L Q G L+ + ++
Sbjct: 529 EQRDGSEASLEWSSERQDIAVISDSYFPRYFIAPAKFLGKQVLSYGQNLSFSFRVDRRDT 588
Query: 90 SLFRANISLDG---------------WEENHTEKFLIQLHQQLEY--LEALMGLEAEKLS 132
L ++ L+G + T K++ +LH+ +Y AL E +KL
Sbjct: 589 RLSAEDLVLEGAGLRVSVPLIAQGNSYPSETTVKYVFRLHEATDYPWRPALTPFEFQKLL 648
Query: 133 GTLGSDNLRLQVKMYFRRIHDYLEN 157
L S +R Y R YL++
Sbjct: 649 NNLTSIKIR---GTYSERSAGYLDD 670
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 22 LDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAIL 81
LDL+ + + ++ Q+ + + IQ+ K ++ QK L Q K H L
Sbjct: 3214 LDLERELLELEKIKQQRFAEELEWERQEIQRFREQEK--IMVQKKLEELQSMKQHLLFQQ 3271
Query: 82 HEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLE 118
E Q F + + ++ + ++ QLHQQLE
Sbjct: 3272 EEERQAQFMMRQETLAQQQLQLEQIQQLQQQLHQQLE 3308
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 22 LDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAIL 81
LDL+ + + ++ Q+ + + IQ+ K ++ QK L Q K H L
Sbjct: 3214 LDLERELLELEKIKQQRFAEELEWERQEIQRFREQEK--IMVQKKLEELQSMKQHLLFQQ 3271
Query: 82 HEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLE 118
E Q F + + ++ + ++ QLHQQLE
Sbjct: 3272 EEERQAQFMMRQETLAQQQLQLEQIQQLQQQLHQQLE 3308
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 29.3 bits (64), Expect = 2.5
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 25 KLIIFQQRQVNQESL----KLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAI 80
KL+ ++RQ QE L +LL++++ L Q+ L + L Q++L ++ ++ L
Sbjct: 254 KLLKQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETL--RELERLRELER 311
Query: 81 LHEMLQQIFSLFRANISLDGWEE-NHTEKFLIQLHQQLEYLEALMGLE 127
+ E+ + RA G+EE N+ K +QL QQ++ LE G E
Sbjct: 312 MLELGWEALYEQRAE-PRSGFEELNNENKSTLQLEQQVKELEKSGGAE 358
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 29.3 bits (64), Expect = 2.5
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 25 KLIIFQQRQVNQESL----KLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAI 80
KL+ ++RQ QE L +LL++++ L Q+ L + L Q++L ++ ++ L
Sbjct: 254 KLLEQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETL--RELERLRELER 311
Query: 81 LHEMLQQIFSLFRANISLDGWEE-NHTEKFLIQLHQQLEYLEALMGLE 127
+ E+ + RA G+EE N+ K +QL QQ++ LE G E
Sbjct: 312 MLELGWEALYEQRAE-PRSGFEELNNENKSTLQLEQQVKELEKSGGAE 358
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 29.3 bits (64), Expect = 2.5
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 9 TVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ---- 64
TV + +TT+ + + KL + + +N +S L+N+ L IQQ +N + +
Sbjct: 1090 TVSLQEQNTTLQTQNAKLQV-ENSTLNSQSTSLMNQNAQLLIQQSSLENENESVIKERED 1148
Query: 65 -KSLSPQQYQKGHTLAILHE--------MLQQIFSLFRANISLDGWEENHTEKF--LIQL 113
KSL + L +LHE ++ + +L A+ +L+ + +++ L++
Sbjct: 1149 LKSLYDSLIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLKQ 1208
Query: 114 HQQLEYLEALMGLEAEKL 131
QLE LE ++ +E EK+
Sbjct: 1209 KGQLEDLEKMLKVEQEKM 1226
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 29.3 bits (64), Expect = 2.5
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 9 TVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQ---- 64
TV + +TT+ + + KL + + +N +S L+N+ L IQQ +N + +
Sbjct: 1089 TVSLQEQNTTLQTQNAKLQV-ENSTLNSQSTSLMNQNAQLLIQQSSLENENESVIKERED 1147
Query: 65 -KSLSPQQYQKGHTLAILHE--------MLQQIFSLFRANISLDGWEENHTEKF--LIQL 113
KSL + L +LHE ++ + +L A+ +L+ + +++ L++
Sbjct: 1148 LKSLYDSLIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHRDLEDRYNQLLKQ 1207
Query: 114 HQQLEYLEALMGLEAEKL 131
QLE LE ++ +E EK+
Sbjct: 1208 KGQLEDLEKMLKVEQEKM 1225
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 29.3 bits (64), Expect = 2.5
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 25 KLIIFQQRQVNQESL----KLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAI 80
KL+ ++RQ QE L +LL++++ L Q+ L + L Q++L ++ ++ L
Sbjct: 254 KLLKQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETL--RELERLRELER 311
Query: 81 LHEMLQQIFSLFRANISLDGWEE-NHTEKFLIQLHQQLEYLEALMGLE 127
+ E+ + RA G+EE N+ K +QL QQ++ LE G E
Sbjct: 312 MLELGWEALYEQRAE-PRSGFEELNNENKSTLQLEQQVKELEKSGGAE 358
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 28.9 bits (63), Expect = 3.2
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 25 KLIIFQQRQVNQESL----KLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAI 80
KL+ ++RQ QE L +LL +++ L Q+ L + L Q++L Q+ ++ L
Sbjct: 345 KLLEQERRQEEQERLLERERLLEEVEELLEQERLRQQDERLWQQETL--QELERLRELER 402
Query: 81 LHEMLQQIFSLFRANISLDGWEE-NHTEKFLIQLHQQLEYLEALMGLE 127
+ E+ + RA G+EE N+ K +QL QQ++ L+ G E
Sbjct: 403 MLELGWEALYEQRAE-PRSGFEELNNENKSTLQLEQQVKELKKSGGAE 449
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,779,086
Number of Sequences: 37866
Number of extensions: 258751
Number of successful extensions: 932
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 37
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.