Guide to the Human Genome
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Name: IFNA7 Sequence: fasta or formatted (189aa) NCBI GI: 71143135
Description:

interferon, alpha 7

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         10           2
 C cysteine            2.6          5           1
 D aspartate           3.7          7           1
 E glutamate           9.0         17           3
 F phenylalanine       6.9         13           1
 G glycine             2.6          5           1
 H histidine           2.1          4           1
 I isoleucine          4.8          9           1
 K lysine              5.3         10           2
 L leucine            12.7         24           2
 M methionine          3.7          7           1
 N asparagine          2.6          5           1
 P proline             2.6          5           1
 Q glutamine           6.3         12           2
 R arginine            6.9         13           2
 S serine              9.5         18           2
 T threonine           4.2          8           1
 V valine              5.3         10           2
 W tryptophan          1.1          2           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon, alpha 7 
IFNA4                 0.918   interferon, alpha 4 
IFNA10                0.915   interferon, alpha 10 
IFNA17                0.906   interferon, alpha 17 
IFNA21                0.858   interferon, alpha 21 
IFNA16                0.844   interferon, alpha 16 
IFNA14                0.815   interferon, alpha 14 
IFNA5                 0.810   interferon, alpha 5 
IFNA6                 0.761   interferon, alpha 6 
IFNA1                 0.759   interferon, alpha 1 
IFNA13                0.756   interferon, alpha 13 precursor 
IFNA2                 0.753   interferon, alpha 2 
IFNA8                 0.747   interferon, alpha 8 
IFNW1                 0.514   interferon, omega 1 
IFNE                  0.222   interferon, epsilon 
IFNB1                 0.205   interferon, beta 1, fibroblast 
IFNK                  0.156   interferon kappa precursor 
BCL2L15               0.011   pro-apoptotic Bcl-2 protein 
MTRF1                 0.011   mitochondrial translational release factor 1 
LOC100132733          0.009   PREDICTED: similar to FLJ00310 protein 
MYH8                  0.009   myosin, heavy chain 8, skeletal muscle, perinatal [...
SERPINB13             0.006   serine (or cysteine) proteinase inhibitor, clade B (o...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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