Guide to the Human Genome
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Name: LRSAM1 Sequence: fasta or formatted (723aa) NCBI GI: 53729359
Description:

leucine rich repeat and sterile alpha motif containing 1

Referenced in:

Leucine-rich Repeat Family
Additional Interaction Domain Families

Other entries for this name:
alt mRNA [723aa] leucine rich repeat and sterile alpha motif containing 1
alt mRNA [723aa] leucine rich repeat and sterile alpha motif containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         41           2
 C cysteine            2.5         18           3
 D aspartate           3.6         26           2
 E glutamate          11.1         80           3
 F phenylalanine       1.7         12           2
 G glycine             2.6         19           1
 H histidine           1.9         14           2
 I isoleucine          4.6         33           1
 K lysine              5.5         40           2
 L leucine            15.4        111           2
 M methionine          3.0         22           1
 N asparagine          2.9         21           1
 P proline             4.1         30           2
 Q glutamine          11.1         80           2
 R arginine            7.2         52           3
 S serine              7.7         56           3
 T threonine           3.7         27           1
 V valine              3.6         26           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat and sterile alpha motif containi... 
LRSAM1                1.000   leucine rich repeat and sterile alpha motif containi...
LRSAM1                1.000   leucine rich repeat and sterile alpha motif containi...
LRCH4                 0.053   leucine-rich repeats and calponin homology (CH) doma...
SHOC2                 0.052   soc-2 suppressor of clear homolog 
LRCH2                 0.050   leucine-rich repeats and calponin homology (CH) dom...
LRCH3                 0.046   leucine-rich repeats and calponin homology (CH) doma...
LOC401387             0.046   leucine-rich repeat and death domain-containing pro...
LRRIQ4                0.045   leucine-rich repeats and IQ motif containing 4 [Hom...
LRDD                  0.044   leucine rich repeat and death domain containing prot...
LRDD                  0.044   leucine rich repeat and death domain containing prot...
LRCH1                 0.044   leucine-rich repeats and calponin homology (CH) doma...
LRDD                  0.042   leucine rich repeat and death domain containing prot...
LRRC7                 0.041   leucine rich repeat containing 7 
LRRC1                 0.041   leucine rich repeat containing 1 
LRRC57                0.040   leucine rich repeat containing 57 
MFHAS1                0.040   malignant fibrous histiocytoma amplified sequence 1...
SCRIB                 0.040   scribble isoform b 
SCRIB                 0.040   scribble isoform a 
LRRC58                0.040   leucine rich repeat containing 58 
TCHH                  0.040   trichohyalin 
LRRC28                0.039   leucine rich repeat containing 28 
LRRC40                0.039   leucine rich repeat containing 40 
HMMR                  0.039   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.039   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.039   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.039   hyaluronan-mediated motility receptor isoform b [Ho...
ZNF853                0.038   zinc finger protein 853 
LRRC10                0.038   leucine rich repeat containing 10 
ERBB2IP               0.038   ERBB2 interacting protein isoform 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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