Guide to the Human Genome
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Name: IFNA2 Sequence: fasta or formatted (188aa) NCBI GI: 11067751
Description:

interferon, alpha 2

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         11           2
 C cysteine            3.2          6           1
 D aspartate           4.3          8           1
 E glutamate           7.4         14           2
 F phenylalanine       5.9         11           1
 G glycine             3.2          6           1
 H histidine           1.6          3           1
 I isoleucine          4.3          8           1
 K lysine              5.9         11           2
 L leucine            14.4         27           2
 M methionine          3.2          6           1
 N asparagine          2.1          4           1
 P proline             2.7          5           1
 Q glutamine           6.4         12           2
 R arginine            5.3         10           2
 S serine              9.6         18           2
 T threonine           5.9         11           1
 V valine              5.3         10           2
 W tryptophan          1.1          2           1
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon, alpha 2 
IFNA5                 0.831   interferon, alpha 5 
IFNA6                 0.831   interferon, alpha 6 
IFNA14                0.814   interferon, alpha 14 
IFNA4                 0.802   interferon, alpha 4 
IFNA13                0.797   interferon, alpha 13 precursor 
IFNA1                 0.791   interferon, alpha 1 
IFNA17                0.788   interferon, alpha 17 
IFNA21                0.788   interferon, alpha 21 
IFNA16                0.785   interferon, alpha 16 
IFNA10                0.785   interferon, alpha 10 
IFNA8                 0.771   interferon, alpha 8 
IFNA7                 0.759   interferon, alpha 7 
IFNW1                 0.542   interferon, omega 1 
IFNE                  0.221   interferon, epsilon 
IFNB1                 0.209   interferon, beta 1, fibroblast 
IFNK                  0.132   interferon kappa precursor 
AP4E1                 0.014   adaptor-related protein complex 4, epsilon 1 subunit...
USP4                  0.011   ubiquitin specific protease 4 isoform a 
USP4                  0.011   ubiquitin specific protease 4 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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