Guide to the Human Genome
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Name: IFNA21 Sequence: fasta or formatted (189aa) NCBI GI: 169791013
Description:

interferon, alpha 21

Referenced in:

Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         11           1
 C cysteine            2.6          5           1
 D aspartate           3.7          7           1
 E glutamate           7.9         15           2
 F phenylalanine       6.3         12           1
 G glycine             3.2          6           1
 H histidine           1.6          3           1
 I isoleucine          5.3         10           1
 K lysine              5.8         11           2
 L leucine            13.2         25           2
 M methionine          3.2          6           1
 N asparagine          3.2          6           1
 P proline             2.6          5           1
 Q glutamine           7.4         14           2
 R arginine            5.3         10           2
 S serine             10.1         19           2
 T threonine           4.2          8           1
 V valine              5.3         10           2
 W tryptophan          1.1          2           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon, alpha 21 
IFNA4                 0.911   interferon, alpha 4 
IFNA17                0.903   interferon, alpha 17 
IFNA10                0.903   interferon, alpha 10 
IFNA5                 0.883   interferon, alpha 5 
IFNA7                 0.865   interferon, alpha 7 
IFNA16                0.840   interferon, alpha 16 
IFNA14                0.814   interferon, alpha 14 
IFNA13                0.802   interferon, alpha 13 precursor 
IFNA1                 0.799   interferon, alpha 1 
IFNA6                 0.799   interferon, alpha 6 
IFNA8                 0.791   interferon, alpha 8 
IFNA2                 0.788   interferon, alpha 2 
IFNW1                 0.519   interferon, omega 1 
IFNE                  0.215   interferon, epsilon 
IFNB1                 0.195   interferon, beta 1, fibroblast 
IFNK                  0.152   interferon kappa precursor 
MTRF1                 0.014   mitochondrial translational release factor 1 
DMD                   0.006   dystrophin Dp427c isoform 
DMD                   0.006   dystrophin Dp260-2 isoform 
DMD                   0.006   dystrophin Dp260-1 isoform 
DMD                   0.006   dystrophin Dp427p2 isoform 
DMD                   0.006   dystrophin Dp427p1 isoform 
DMD                   0.006   dystrophin Dp427l isoform 
DMD                   0.006   dystrophin Dp427m isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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