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Search of human proteins with 28875797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28875797 small protein rich in arginine and glycine [Homo sap... 489 e-139
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 62 6e-10
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 62 6e-10
gi|119395750 keratin 1 [Homo sapiens] 60 1e-09
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 59 4e-09
gi|55956788 nucleolin [Homo sapiens] 57 1e-08
gi|12056465 fibrillarin [Homo sapiens] 57 1e-08
gi|55956899 keratin 9 [Homo sapiens] 56 3e-08
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 55 6e-08
gi|15055539 ribosomal protein S2 [Homo sapiens] 52 4e-07
gi|24430192 keratin 16 [Homo sapiens] 52 5e-07
gi|109452587 family with sequence similarity 98, member B isofor... 52 6e-07
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 51 8e-07
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 51 8e-07
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 51 1e-06
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 51 1e-06
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 51 1e-06
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 51 1e-06
gi|238776833 THO complex 4 [Homo sapiens] 49 3e-06
gi|195972866 keratin 10 [Homo sapiens] 49 5e-06
gi|15431310 keratin 14 [Homo sapiens] 48 9e-06
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 47 1e-05
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ... 47 1e-05
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 47 1e-05
gi|24430190 keratin 15 [Homo sapiens] 47 2e-05
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 47 2e-05
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 47 2e-05
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 47 2e-05
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 46 3e-05
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 489 bits (1259), Expect = e-139
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQME 60
MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQME
Sbjct: 1 MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQME 60
Query: 61 NRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGG 120
NRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGG
Sbjct: 61 NRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGG 120
Query: 121 RATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR 180
RATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR
Sbjct: 121 RATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR 180
Query: 181 GRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMA 240
GRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMA
Sbjct: 181 GRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMA 240
Query: 241 QTDPETND 248
QTDPETND
Sbjct: 241 QTDPETND 248
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 61.6 bits (148), Expect = 6e-10
Identities = 44/103 (42%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 101 GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG 160
GGR P + G G G + +GG A +P G+RR G RG G
Sbjct: 7 GGRCCPEQEEGESAAGGSGAGGDSAIEQGGQG--------SALAPSPVSGVRREGARG-G 57
Query: 161 GPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGR 203
G GRG + G GG+ GRGRG RGRG GRGRGRGRGR
Sbjct: 58 GRGRGRWKQAGRG-GGVCGRGRG---RGRGRGRGRGRGRGRGR 96
Score = 45.1 bits (105), Expect = 6e-05
Identities = 41/106 (38%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 94 ALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRR 153
A+ +G G P G+ R G RGG R R + RGG G R
Sbjct: 31 AIEQGGQGSALAPSPVSGVRREGARGGGRGRG--------RWKQAGRGGGVC----GRGR 78
Query: 154 GGVRGRG-GPGRG-GLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGR 197
G RGRG G GRG G GR G G+GG G G G G GG G R
Sbjct: 79 GRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRR 124
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 61.6 bits (148), Expect = 6e-10
Identities = 44/103 (42%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 101 GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG 160
GGR P + G G G + +GG A +P G+RR G RG G
Sbjct: 7 GGRCCPEQEEGESAAGGSGAGGDSAIEQGGQG--------SALAPSPVSGVRREGARG-G 57
Query: 161 GPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGR 203
G GRG + G GG+ GRGRG RGRG GRGRGRGRGR
Sbjct: 58 GRGRGRWKQAGRG-GGVCGRGRG---RGRGRGRGRGRGRGRGR 96
Score = 45.1 bits (105), Expect = 6e-05
Identities = 41/106 (38%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 94 ALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRR 153
A+ +G G P G+ R G RGG R R + RGG G R
Sbjct: 31 AIEQGGQGSALAPSPVSGVRREGARGGGRGRG--------RWKQAGRGGGVC----GRGR 78
Query: 154 GGVRGRG-GPGRG-GLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGR 197
G RGRG G GRG G GR G G+GG G G G G GG G R
Sbjct: 79 GRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRR 124
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 60.5 bits (145), Expect = 1e-09
Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 116 GLRGGRATRTLLR-GGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGR 174
G GG +R+L+ GG ++ RGG + G GG G GG G GG G G +G
Sbjct: 57 GAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGG 116
Query: 175 GGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
GG GG G G G G GGFGG G G G G
Sbjct: 117 GGFGGFGSGGGGFGGGGFGGGGYGGGYG 144
Score = 57.8 bits (138), Expect = 9e-09
Identities = 41/102 (40%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 129 GGMSLRGQNLLRGGRAVAPRMGLRRGGVRGR--------GGPGRGGLGRGAMGRGGIGGR 180
GG R L G ++++ + + RGG RG GG G GG G G G GGIGG
Sbjct: 60 GGFGSRSLVNLGGSKSIS--ISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGG 117
Query: 181 GRGMIGRGRGGFGG---RGRGRGRGRGALARPVLTKEQLDNQ 219
G G G G GGFGG G G G G G + P +E NQ
Sbjct: 118 GFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPGGIQEVTINQ 159
Score = 45.8 bits (107), Expect = 3e-05
Identities = 26/57 (45%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 154 GGVRGRGGPGRG------GLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
GG RG GG G G G G G+ G GG GG GRG G G +G G G G G
Sbjct: 515 GGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGG 571
Score = 44.7 bits (104), Expect = 8e-05
Identities = 38/102 (37%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 108 IQRGLPRGGLRGGRAT--RTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRG 165
I G RGG GG + + GG S GGR G G G G G G
Sbjct: 512 ISGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGG 571
Query: 166 GLGRGAMGRGGIGGRGRGMIGRGRGG-FGGRGRGRGRGRGAL 206
G G G+ G G G RG G G GG GGRG G G G++
Sbjct: 572 GGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSI 613
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 150 GLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRG 200
G GG RG G G GG + GRG GG G IG GRG G + G
Sbjct: 581 GSSSGGYRGGSGGGGGG---SSGGRGSGGGSSGGSIG-GRGSSSGGVKSSG 627
Score = 32.7 bits (73), Expect = 0.30
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 114 RGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGR-----GGPGRGGLG 168
R G R G GG S ++ R R GG GR GG G G G
Sbjct: 8 RSGYRSG--------GGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAG 59
Query: 169 RGAMGRG--GIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G R +GG I RGG G G G G G G
Sbjct: 60 GGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGG 97
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 58.9 bits (141), Expect = 4e-09
Identities = 35/57 (61%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 150 GLRRGGVRGRGGPGRGGL-GRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205
G R RG GG GR G GR + G G GGRGRG GRG GG GRGRGRG GRGA
Sbjct: 1661 GKRNWKTRGTGGRGRWGRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRG-GRGA 1716
Score = 55.5 bits (132), Expect = 4e-08
Identities = 35/74 (47%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 153 RGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLT 212
R G RGG GRGG GRG+ GRGG G RGR GRGR GGRG RG R AR +
Sbjct: 1678 RWGRWSRGGRGRGGRGRGSRGRGGGGTRGR---GRGR---GGRGASRGATRAKRAR--IA 1729
Query: 213 KEQLDNQLDAYMSK 226
++ D S+
Sbjct: 1730 DDEFDTMFSGRFSR 1743
Score = 30.4 bits (67), Expect = 1.5
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 173 GRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALAR 208
G G + RG GRGR G GR GRGRG R
Sbjct: 1659 GNGKRNWKTRGTGGRGRWGRWGRWSRGGRGRGGRGR 1694
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 101 GGRGLPIIQRGLPRGGL-RGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGR 159
GGRG RGG RGGR + RGG RG+ RGGR G RG R +
Sbjct: 1671 GGRGRWGRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRGGR------GASRGATRAK 1724
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 57.4 bits (137), Expect = 1e-08
Identities = 35/57 (61%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 154 GGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR-GRGRGALARP 209
GG GRGG GRGG G GRGG GG G GRGRGGFGGRG R GRG G +P
Sbjct: 651 GGFGGRGG-GRGGFGGRGGGRGGRGGFG----GRGRGGFGGRGGFRGGRGGGGDHKP 702
Score = 52.4 bits (124), Expect = 4e-07
Identities = 27/42 (64%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 163 GRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G GG G GRGG GGRG G GRGGFGGRGRG GRG
Sbjct: 649 GEGGFGGRGGGRGGFGGRGGGR--GGRGGFGGRGRGGFGGRG 688
Score = 45.4 bits (106), Expect = 4e-05
Identities = 26/40 (65%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 153 RGGVRGRGGPGRGGLGR-GAMGRGGIGGRGRGMIGRGRGG 191
RGG GRGG GRGG G G GRGG GGRG GRG GG
Sbjct: 660 RGGFGGRGG-GRGGRGGFGGRGRGGFGGRGGFRGGRGGGG 698
Score = 38.1 bits (87), Expect = 0.007
Identities = 28/56 (50%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 129 GGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGI-GGRGRG 183
GG RG GGR G RGG G GG GRGG G GRGG GGRG G
Sbjct: 651 GGFGGRG-----GGRGGFGGRGGGRGGRGGFGGRGRGGFG----GRGGFRGGRGGG 697
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/58 (46%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 113 PRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGG--PGRGGLG 168
P+G GG R RGG RG RGGR G RGG GRGG GRGG G
Sbjct: 647 PKG--EGGFGGRGGGRGGFGGRGGG--RGGRGGFGGRG--RGGFGGRGGFRGGRGGGG 698
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 57.0 bits (136), Expect = 1e-08
Identities = 36/61 (59%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 147 PRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGG---RGRGMIGRGRGGFGGRGRGRGRGR 203
P R GG GRGG G G GRG GRGG GG RG G GRGRGG GG G G G GR
Sbjct: 3 PGFSPRGGGFGGRGGFGDRG-GRG--GRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59
Query: 204 G 204
G
Sbjct: 60 G 60
Score = 55.8 bits (133), Expect = 3e-08
Identities = 44/98 (44%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 113 PRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG-GPGRGGLGRGA 171
PRGG GGR GG RG RGGR R GG RGRG G G GG G G
Sbjct: 7 PRGGGFGGR-------GGFGDRGG---RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG 56
Query: 172 MGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARP 209
GRGG G G GRGRGG RG G+ + P
Sbjct: 57 GGRGGGGFHSGGNRGRGRGG----KRGNQSGKNVMVEP 90
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/47 (53%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 162 PGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALAR 208
PG G G GRGG G RG GRGG GG G GRGRG G R
Sbjct: 3 PGFSPRGGGFGGRGGFGDRG------GRGGRGGFGGGRGRGGGFRGR 43
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 55.8 bits (133), Expect = 3e-08
Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 119 GGRATRTLLRGGMSLRGQNL---LRGGRAVAPRMGLRRGGVRGRGGPGRGGL----GRGA 171
GG ++R RGG G + GG + + G GG RG GG GG G G
Sbjct: 54 GGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGG 113
Query: 172 MGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGAL--ARPVLTKEQLDNQLDAYMSKTKG 229
GG GG G G G GGFGG G G G G G + A T ++L+++L +Y+ K +
Sbjct: 114 GFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGGILTANEKSTMQELNSRLASYLDKVQA 173
Query: 230 HLDAELD 236
+A D
Sbjct: 174 LEEANND 180
Score = 50.8 bits (120), Expect = 1e-06
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 18/209 (8%)
Query: 1 MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQME 60
+ +Q + K L+ + + + N R+ L+ Q N+ A + +Q +N+ + +
Sbjct: 384 LQSQLSKKAALEKSLEDTKN-RYCGQLQMIQEQISNLEAQITDVRQEIECQNQEYSLLLS 442
Query: 61 NRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGG---RGLPIIQRGLPRGGL 117
+ ++ ++ +L + G+ + ++ IG RG GG RG RG G
Sbjct: 443 IKMRLEKEIETYHNLLEG-GQEDFESSGAGKIGLGGRGGSGGSYGRG----SRGGSGGSY 497
Query: 118 RGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG-GPGRGGLGRGAMGRGG 176
GG + G G + RGG + G GG G G G G GG G G G
Sbjct: 498 GGGGS-------GGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGH 550
Query: 177 IGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205
GG G G G G G GG G G G G G+
Sbjct: 551 SGGSG-GNYGGGSGSGGGSGGGYGGGSGS 578
Score = 36.6 bits (83), Expect = 0.021
Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 151 LRRGGVRGRGGPGRGGLGRGAMGR----GGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
L R G G GG G GG R + R GG GG GR G GG R GRG G
Sbjct: 11 LSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG 66
Score = 33.9 bits (76), Expect = 0.14
Identities = 25/77 (32%), Positives = 28/77 (36%)
Query: 129 GGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRG 188
GG L +R + G GG R G GG GRGG G G G
Sbjct: 18 GGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGS 77
Query: 189 RGGFGGRGRGRGRGRGA 205
GGF G G G G+
Sbjct: 78 GGGFSASSLGGGFGGGS 94
Score = 28.9 bits (63), Expect = 4.3
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 154 GGVRGRGGPG---RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGR 197
GG RGG G GG G G G GG G G G G GG G+
Sbjct: 574 GGSGSRGGSGGSHGGGSGFGGESGGSYGG-GEEASGSGGGYGGGSGK 619
Score = 27.7 bits (60), Expect = 9.7
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 165 GGLGRGAMGRGGI------------GGRGRGMIGRGRGGFGGRGRGRGRGRG 204
GG G G +G GG GG G G G GG R GRG G
Sbjct: 15 GGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG 66
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 55.1 bits (131), Expect = 6e-08
Identities = 29/51 (56%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 148 RMGLRRGGVRGRGGPGRGG-LGRGAMGRGGIGGRGRGMIGRGRGGFGGRGR 197
R RGG GRGG GRGG +GRG G GG GG GRG G GG GG+ R
Sbjct: 372 RADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQR 422
Score = 51.2 bits (121), Expect = 8e-07
Identities = 30/60 (50%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 142 GRAVAPRMGLRRGGVRGRGGPGRGGLGRGA-MGRGGIGGRGRGMIGRGRGGFGGRGRGRG 200
G + RR GG GRGG GRG MGRGG GG G G G GRGGF G G G
Sbjct: 361 GNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSG--GGGRGGFPSGGGGGG 418
Score = 48.9 bits (115), Expect = 4e-06
Identities = 29/54 (53%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 154 GGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGR-GRGAL 206
GG G G RGG GRG G GG GG G G R GG+ RGRG GR GRG +
Sbjct: 203 GGSGGYGQQDRGGRGRG--GSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGM 254
Score = 47.8 bits (112), Expect = 9e-06
Identities = 35/84 (41%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 115 GGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGR 174
GG GG + GG S GG R G RGG G GG G GG R +
Sbjct: 188 GGSGGGYGNQDQSGGGGS--------GGYGQQDRGGRGRGGSGGGGGGGGGGYNRSS--- 236
Query: 175 GGIGGRGRGMIGRGRGGFGGRGRG 198
GG RGRG GRGG GG RG
Sbjct: 237 GGYEPRGRGGGRGGRGGMGGSDRG 260
Score = 40.4 bits (93), Expect = 0.001
Identities = 45/127 (35%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 93 GALARGAIGGRGLPIIQRG-LPRGGLRGGRATR---------TLLRGGMSLRGQ-NLLRG 141
G + RG GG G RG P GG GG R T S R + N +
Sbjct: 390 GPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKA 449
Query: 142 GRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRG--RGMI--GRGRGGFGGRGR 197
+ P G + G G R G GRG RGG GRG RG GRG G GG G
Sbjct: 450 PKPDGPGGGPGGSHMGGNYGDDRRG-GRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGP 508
Query: 198 GRGRGRG 204
G+ RG
Sbjct: 509 GKMDSRG 515
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 154 GGVRGRGGPGRGGLGRGAMGRGGIGGRGRG----MIGRGRGGFGGRGRGRGRGRG 204
GG G GG G G + +M GG G G G G G GG+G + RG GRGRG
Sbjct: 166 GGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRG-GRGRG 219
Score = 37.7 bits (86), Expect = 0.009
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 141 GGRAVAPRMGLRRGGVRGRGGPGRGGLGR----GAMGRGGIGGRGRGMIGRGRGGFGGRG 196
GG G + + GG G GG G G G GG G + RG GRG G GG G
Sbjct: 169 GGGGGGGNYGQDQSSMSSGGGSG-GGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227
Query: 197 --------------RGRGRGRG 204
RGRG GRG
Sbjct: 228 GGGGYNRSSGGYEPRGRGGGRG 249
Score = 37.0 bits (84), Expect = 0.016
Identities = 24/46 (52%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 150 GLRRGGVRGRGGP----GRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
G RGG RGRGGP G GG G G GRGG G G G+ R G
Sbjct: 380 GNGRGG-RGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424
Score = 35.8 bits (81), Expect = 0.036
Identities = 25/53 (47%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 134 RGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIG 186
RG RGGR MG RGG GG G GG GRG GG GG G+ G
Sbjct: 377 RGGGNGRGGRGRGGPMG--RGGY---GGGGSGGGGRGGFPSGGGGGGGQQRAG 424
Score = 35.0 bits (79), Expect = 0.061
Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 23/66 (34%)
Query: 158 GRGGPGRGGLGR---------------------GAMGRGGIGGRGRGMIGRGRGGFGGRG 196
G GG G G G+ G G GG G + RG GRGRGG GG G
Sbjct: 168 GGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRG--GRGRGGSGGGG 225
Query: 197 RGRGRG 202
G G G
Sbjct: 226 GGGGGG 231
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 169 RGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALAR 208
R RGG GRG GRGRGG GRG G G G R
Sbjct: 372 RADFNRGGGNGRG----GRGRGGPMGRGGYGGGGSGGGGR 407
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 101 GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG 160
GGRG RG GG GG GG RG+ RGGR G RGG G
Sbjct: 214 GGRG-----RGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGR--GGMGGSDRGGFNKFG 266
Query: 161 GP 162
GP
Sbjct: 267 GP 268
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 52.4 bits (124), Expect = 4e-07
Identities = 33/62 (53%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 154 GGVRGRGGPGRGGLGRGAMGRGGI-GGRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLT 212
G G GGPG G+G RGG GG G G+ GRGRG RGRGRGRGRGA
Sbjct: 6 GAAGGPGGPGGPGMGN----RGGFRGGFGSGIRGRGRG----RGRGRGRGRGARGGKAED 57
Query: 213 KE 214
KE
Sbjct: 58 KE 59
Score = 37.4 bits (85), Expect = 0.012
Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 147 PRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR 199
P MG RGG RG G G G GRG GRGR GRGRG GG+ +
Sbjct: 17 PGMG-NRGGFRG-------GFGSGIRGRGRGRGRGR---GRGRGARGGKAEDK 58
Score = 29.6 bits (65), Expect = 2.5
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 141 GGRAVAPRMGLRRGGVRGRGGPGRG-GLGRGAMGRGGIGGR 180
GG + R G R G G G GRG G GRG GRG GG+
Sbjct: 15 GGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGR-GRGARGGK 54
>gi|24430192 keratin 16 [Homo sapiens]
Length = 473
Score = 52.0 bits (123), Expect = 5e-07
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 115 GGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGR 174
GG+ GG + + + G S R + GG +V+ R GG G GG GG +
Sbjct: 22 GGIGGGSSRISSVLAGGSCRAPSTYGGGLSVSSRFS--SGGACGLGGGYGGGFSSSSSFG 79
Query: 175 GGIGGRGRGMIGRGRGGFGGRGRGRGRGRG---ALARPVLTKEQLDNQLDAYMSKTKGHL 231
G GG G +G G GG G G G G G + +T + L+++L +Y+ K +
Sbjct: 80 SGFGGGYGGGLGAGFGGGLGAGFGGGFAGGDGLLVGSEKVTMQNLNDRLASYLDKVRALE 139
Query: 232 DAELD 236
+A D
Sbjct: 140 EANAD 144
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 51.6 bits (122), Expect = 6e-07
Identities = 35/73 (47%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 141 GGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGG---------RGRGMIGRGRGG 191
GG R G GG RG G G GG G G G GG GG +GRG G GRGG
Sbjct: 340 GGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYG-GRGG 398
Query: 192 FGGRGRGRGRGRG 204
+GGRG GRG G
Sbjct: 399 YGGRGGYGGRGYG 411
Score = 50.4 bits (119), Expect = 1e-06
Identities = 49/116 (42%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 90 RPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRM 149
R G RG GG G G RGG GG GG G GG
Sbjct: 328 RQEGGGGRGGWGGGG-----GGGGRGGGGGGGGRGGWGGGGGGWGGGG--GGGGGWGGGG 380
Query: 150 GLRRGGVRGRGG-PGRGGLGRGAMGRGGIGGRGRG-MIGRGRGGFGGRGRGRGRGR 203
G RGG +GRG GRGG G GRGG GGRG G G G GG GG G G G R
Sbjct: 381 GGGRGGFQGRGDYGGRGGYG----GRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRR 432
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/52 (57%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 153 RGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
RGG G GG G G G G GRGG GG G G G G GG GG G G G GRG
Sbjct: 335 RGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGW-GGGGGGGGGWGGGGGGGRG 385
Score = 49.3 bits (116), Expect = 3e-06
Identities = 47/106 (44%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 101 GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG 160
GGRG G GG GGR GG G+ GG G GG G G
Sbjct: 333 GGRG------GWGGGGGGGGRG------GGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGG 380
Query: 161 GPGRGGL-GRGAMG-RGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G GRGG GRG G RGG GGRG G GRG G G G G G G G
Sbjct: 381 GGGRGGFQGRGDYGGRGGYGGRG-GYGGRGYGDPYGGGGGGGGGGG 425
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 51.2 bits (121), Expect = 8e-07
Identities = 31/55 (56%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 142 GRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRG 196
G PR G R G GRGG GRGG GRG RGG GG G G G GGF GRG
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGG-GRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 50.4 bits (119), Expect = 1e-06
Identities = 34/55 (61%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 150 GLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF-GGRGRG-RGRG 202
G RGG RG G GRGG GRG GG GG RG G G GGF GGRG G RGRG
Sbjct: 166 GPPRGGGRGGRGGGRGGGGRG----GGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 45.1 bits (105), Expect = 6e-05
Identities = 38/75 (50%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Query: 153 RGGVRG---RGGPGRGGLGRGAMG---RGGIGGRGRGMI-GRGRGGFG-GRGRG---RGR 201
RGG RG RGG G GG RG RGG GG G G G GRGGFG G GRG +G+
Sbjct: 4 RGGGRGGFNRGGGG-GGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
Query: 202 GRGALARPVLTKEQL 216
+G R VL E L
Sbjct: 63 DQGPPERVVLLGEFL 77
Score = 44.3 bits (103), Expect = 1e-04
Identities = 28/48 (58%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 158 GRGGPGRGGLGRGAMGRG-GIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G GP RGG GRG G G G GGRG G G RGG GG G G GRG
Sbjct: 163 GEKGPPRGG-GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG 209
Score = 43.5 bits (101), Expect = 2e-04
Identities = 32/75 (42%), Positives = 34/75 (45%), Gaps = 22/75 (29%)
Query: 109 QRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLG 168
++G PRGG RGGR GGR R G R GG RG GRGG G
Sbjct: 164 EKGPPRGGGRGGRG------------------GGRGGGGRGGGRGGGFRG----GRGGGG 201
Query: 169 RGAMGRGGIGGRGRG 183
G G G G RGRG
Sbjct: 202 GGFRGGRGGGFRGRG 216
Score = 29.6 bits (65), Expect = 2.5
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 101 GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG 160
GGRG RG GG G ++ GG G N GGR G GRG
Sbjct: 6 GGRGG--FNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR-----------GGFGRG 52
Query: 161 GPGRGGLGRG 170
G GRGG +G
Sbjct: 53 G-GRGGFNKG 61
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 51.2 bits (121), Expect = 8e-07
Identities = 31/55 (56%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 142 GRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRG 196
G PR G R G GRGG GRGG GRG RGG GG G G G GGF GRG
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGG-GRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 50.4 bits (119), Expect = 1e-06
Identities = 34/55 (61%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 150 GLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF-GGRGRG-RGRG 202
G RGG RG G GRGG GRG GG GG RG G G GGF GGRG G RGRG
Sbjct: 166 GPPRGGGRGGRGGGRGGGGRG----GGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 45.1 bits (105), Expect = 6e-05
Identities = 38/75 (50%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Query: 153 RGGVRG---RGGPGRGGLGRGAMG---RGGIGGRGRGMI-GRGRGGFG-GRGRG---RGR 201
RGG RG RGG G GG RG RGG GG G G G GRGGFG G GRG +G+
Sbjct: 4 RGGGRGGFNRGGGG-GGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
Query: 202 GRGALARPVLTKEQL 216
+G R VL E L
Sbjct: 63 DQGPPERVVLLGEFL 77
Score = 44.3 bits (103), Expect = 1e-04
Identities = 28/48 (58%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 158 GRGGPGRGGLGRGAMGRG-GIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G GP RGG GRG G G G GGRG G G RGG GG G G GRG
Sbjct: 163 GEKGPPRGG-GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG 209
Score = 43.5 bits (101), Expect = 2e-04
Identities = 32/75 (42%), Positives = 34/75 (45%), Gaps = 22/75 (29%)
Query: 109 QRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLG 168
++G PRGG RGGR GGR R G R GG RG GRGG G
Sbjct: 164 EKGPPRGGGRGGRG------------------GGRGGGGRGGGRGGGFRG----GRGGGG 201
Query: 169 RGAMGRGGIGGRGRG 183
G G G G RGRG
Sbjct: 202 GGFRGGRGGGFRGRG 216
Score = 29.6 bits (65), Expect = 2.5
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 101 GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG 160
GGRG RG GG G ++ GG G N GGR G GRG
Sbjct: 6 GGRGG--FNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR-----------GGFGRG 52
Query: 161 GPGRGGLGRG 170
G GRGG +G
Sbjct: 53 G-GRGGFNKG 61
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 50.8 bits (120), Expect = 1e-06
Identities = 65/178 (36%), Positives = 69/178 (38%), Gaps = 49/178 (27%)
Query: 70 KLKQSLKQRLGKSN-----IQARLGRPIGALARGAIGGRGLPIIQRGLP--RGGLRGGRA 122
KLK SL ++ N + R GR + RG GG G P G RGG RGG
Sbjct: 383 KLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFP 442
Query: 123 TRTLL--RGGMSLRGQNLLRGGRAVAPRMGLRR--------------------------- 153
R RG S G R G P G
Sbjct: 443 PRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPP 502
Query: 154 -GGVRGRGGPG-----RGGL----GRGAMGRGGIGG-RG--RGMIGRGRGGFGGRGRG 198
GG RGRGGPG RGGL G G M RGG GG RG RG G RGGFGG RG
Sbjct: 503 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRG 560
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/114 (40%), Positives = 53/114 (46%), Gaps = 31/114 (27%)
Query: 110 RGLPRGGLRGGRATRTLLRGGMSLRGQ--NLLRGGRAVAPRMGLRRGGVRGRGGPGRGGL 167
RG P GG+RGGR GG+ RG + RGGR G RGG RG
Sbjct: 509 RGGP-GGMRGGR-------GGLMDRGGPGGMFRGGR------GGDRGGFRG--------- 545
Query: 168 GRGAMGRGGIGGRGRGMIGRGRG----GFGGRGRGRGRGRGALARPVLTKEQLD 217
GRG M RGG GG RG G G GGR GRG G G + + +E+ D
Sbjct: 546 GRG-MDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRG-GPGKMDKGEHRQERRD 597
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 98 GAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVR 157
G GGRG ++ RG P G RGGR RGG G+ + RGG G RRGG
Sbjct: 514 GMRGGRG-GLMDRGGPGGMFRGGRGGD---RGGFR-GGRGMDRGGFG-----GGRRGGPG 563
Query: 158 GRGGPGRGGLGRGAMGRGGIGGRGRG 183
G GP +G GRGG G +G
Sbjct: 564 GPPGPLMEQMGGRRGGRGGPGKMDKG 589
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/82 (40%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 150 GLRRGGVRGRG------GPGRGGLGRGAMGRGGI--GGRGRGMIGRG----RGGFGGRGR 197
G GG G G GP G GRG RGG+ GGRG G G G RGGF G
Sbjct: 223 GQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGG 282
Query: 198 GRGRGRGA-LARPVLTKEQLDN 218
G L PV E DN
Sbjct: 283 PMDEGPDLDLGPPVDPDEDSDN 304
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 132 SLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
S+RG R GR + P + RGG G GGPG G MGR +GGR G RGG
Sbjct: 397 SMRGGLPPREGRGMPPPL---RGGPGGPGGPG------GPMGR--MGGR-----GGDRGG 440
Query: 192 FGGRGRGRGRG 202
F RG RG
Sbjct: 441 FPPRGPRGSRG 451
Score = 35.8 bits (81), Expect = 0.036
Identities = 34/83 (40%), Positives = 38/83 (45%), Gaps = 29/83 (34%)
Query: 93 GALARGAIGG--RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAP--- 147
G + RG GG RG RG RGG RGGR + RGG GGR P
Sbjct: 521 GLMDRGGPGGMFRG----GRGGDRGGFRGGRG---MDRGGFG--------GGRRGGPGGP 565
Query: 148 ------RMGLRRGGVRGRGGPGR 164
+MG RRG GRGGPG+
Sbjct: 566 PGPLMEQMGGRRG---GRGGPGK 585
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 50.8 bits (120), Expect = 1e-06
Identities = 65/178 (36%), Positives = 69/178 (38%), Gaps = 49/178 (27%)
Query: 70 KLKQSLKQRLGKSN-----IQARLGRPIGALARGAIGGRGLPIIQRGLP--RGGLRGGRA 122
KLK SL ++ N + R GR + RG GG G P G RGG RGG
Sbjct: 438 KLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFP 497
Query: 123 TRTLL--RGGMSLRGQNLLRGGRAVAPRMGLRR--------------------------- 153
R RG S G R G P G
Sbjct: 498 PRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPP 557
Query: 154 -GGVRGRGGPG-----RGGL----GRGAMGRGGIGG-RG--RGMIGRGRGGFGGRGRG 198
GG RGRGGPG RGGL G G M RGG GG RG RG G RGGFGG RG
Sbjct: 558 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRG 615
Score = 43.9 bits (102), Expect = 1e-04
Identities = 35/82 (42%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 150 GLRRGGVRGRG-----------GPGRGGLGRGAMGRGGIGGRGRGMIGRG-RGGFGGRGR 197
G GG G G G GRGG RG M RGG GG GRG +G G RGGF G
Sbjct: 279 GQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGG-GRGGMGAGERGGFNKPGG 337
Query: 198 GRGRGRGA-LARPVLTKEQLDN 218
G L PV E DN
Sbjct: 338 PMDEGPDLDLGPPVDPDEDSDN 359
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/114 (40%), Positives = 53/114 (46%), Gaps = 31/114 (27%)
Query: 110 RGLPRGGLRGGRATRTLLRGGMSLRGQ--NLLRGGRAVAPRMGLRRGGVRGRGGPGRGGL 167
RG P GG+RGGR GG+ RG + RGGR G RGG RG
Sbjct: 564 RGGP-GGMRGGR-------GGLMDRGGPGGMFRGGR------GGDRGGFRG--------- 600
Query: 168 GRGAMGRGGIGGRGRGMIGRGRG----GFGGRGRGRGRGRGALARPVLTKEQLD 217
GRG M RGG GG RG G G GGR GRG G G + + +E+ D
Sbjct: 601 GRG-MDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRG-GPGKMDKGEHRQERRD 652
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 98 GAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVR 157
G GGRG ++ RG P G RGGR RGG G+ + RGG G RRGG
Sbjct: 569 GMRGGRG-GLMDRGGPGGMFRGGRGGD---RGGFR-GGRGMDRGGFG-----GGRRGGPG 618
Query: 158 GRGGPGRGGLGRGAMGRGGIGGRGRG 183
G GP +G GRGG G +G
Sbjct: 619 GPPGPLMEQMGGRRGGRGGPGKMDKG 644
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 132 SLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
S+RG R GR + P + RGG G GGPG G MGR +GGR G RGG
Sbjct: 452 SMRGGLPPREGRGMPPPL---RGGPGGPGGPG------GPMGR--MGGR-----GGDRGG 495
Query: 192 FGGRGRGRGRG 202
F RG RG
Sbjct: 496 FPPRGPRGSRG 506
Score = 35.8 bits (81), Expect = 0.036
Identities = 34/83 (40%), Positives = 38/83 (45%), Gaps = 29/83 (34%)
Query: 93 GALARGAIGG--RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAP--- 147
G + RG GG RG RG RGG RGGR + RGG GGR P
Sbjct: 576 GLMDRGGPGGMFRG----GRGGDRGGFRGGRG---MDRGGFG--------GGRRGGPGGP 620
Query: 148 ------RMGLRRGGVRGRGGPGR 164
+MG RRG GRGGPG+
Sbjct: 621 PGPLMEQMGGRRG---GRGGPGK 640
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 50.8 bits (120), Expect = 1e-06
Identities = 65/178 (36%), Positives = 69/178 (38%), Gaps = 49/178 (27%)
Query: 70 KLKQSLKQRLGKSN-----IQARLGRPIGALARGAIGGRGLPIIQRGLP--RGGLRGGRA 122
KLK SL ++ N + R GR + RG GG G P G RGG RGG
Sbjct: 444 KLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFP 503
Query: 123 TRTLL--RGGMSLRGQNLLRGGRAVAPRMGLRR--------------------------- 153
R RG S G R G P G
Sbjct: 504 PRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPP 563
Query: 154 -GGVRGRGGPG-----RGGL----GRGAMGRGGIGG-RG--RGMIGRGRGGFGGRGRG 198
GG RGRGGPG RGGL G G M RGG GG RG RG G RGGFGG RG
Sbjct: 564 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRG 621
Score = 43.9 bits (102), Expect = 1e-04
Identities = 35/82 (42%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 150 GLRRGGVRGRG-----------GPGRGGLGRGAMGRGGIGGRGRGMIGRG-RGGFGGRGR 197
G GG G G G GRGG RG M RGG GG GRG +G G RGGF G
Sbjct: 285 GQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGG-GRGGMGAGERGGFNKPGG 343
Query: 198 GRGRGRGA-LARPVLTKEQLDN 218
G L PV E DN
Sbjct: 344 PMDEGPDLDLGPPVDPDEDSDN 365
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/114 (40%), Positives = 53/114 (46%), Gaps = 31/114 (27%)
Query: 110 RGLPRGGLRGGRATRTLLRGGMSLRGQ--NLLRGGRAVAPRMGLRRGGVRGRGGPGRGGL 167
RG P GG+RGGR GG+ RG + RGGR G RGG RG
Sbjct: 570 RGGP-GGMRGGR-------GGLMDRGGPGGMFRGGR------GGDRGGFRG--------- 606
Query: 168 GRGAMGRGGIGGRGRGMIGRGRG----GFGGRGRGRGRGRGALARPVLTKEQLD 217
GRG M RGG GG RG G G GGR GRG G G + + +E+ D
Sbjct: 607 GRG-MDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRG-GPGKMDKGEHRQERRD 658
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 98 GAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVR 157
G GGRG ++ RG P G RGGR RGG G+ + RGG G RRGG
Sbjct: 575 GMRGGRG-GLMDRGGPGGMFRGGRGGD---RGGFR-GGRGMDRGGFG-----GGRRGGPG 624
Query: 158 GRGGPGRGGLGRGAMGRGGIGGRGRG 183
G GP +G GRGG G +G
Sbjct: 625 GPPGPLMEQMGGRRGGRGGPGKMDKG 650
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 132 SLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
S+RG R GR + P + RGG G GGPG G MGR +GGR G RGG
Sbjct: 458 SMRGGLPPREGRGMPPPL---RGGPGGPGGPG------GPMGR--MGGR-----GGDRGG 501
Query: 192 FGGRGRGRGRG 202
F RG RG
Sbjct: 502 FPPRGPRGSRG 512
Score = 35.8 bits (81), Expect = 0.036
Identities = 34/83 (40%), Positives = 38/83 (45%), Gaps = 29/83 (34%)
Query: 93 GALARGAIGG--RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAP--- 147
G + RG GG RG RG RGG RGGR + RGG GGR P
Sbjct: 582 GLMDRGGPGGMFRG----GRGGDRGGFRGGRG---MDRGGFG--------GGRRGGPGGP 626
Query: 148 ------RMGLRRGGVRGRGGPGR 164
+MG RRG GRGGPG+
Sbjct: 627 PGPLMEQMGGRRG---GRGGPGK 646
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 50.8 bits (120), Expect = 1e-06
Identities = 65/178 (36%), Positives = 69/178 (38%), Gaps = 49/178 (27%)
Query: 70 KLKQSLKQRLGKSN-----IQARLGRPIGALARGAIGGRGLPIIQRGLP--RGGLRGGRA 122
KLK SL ++ N + R GR + RG GG G P G RGG RGG
Sbjct: 439 KLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFP 498
Query: 123 TRTLL--RGGMSLRGQNLLRGGRAVAPRMGLRR--------------------------- 153
R RG S G R G P G
Sbjct: 499 PRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPP 558
Query: 154 -GGVRGRGGPG-----RGGL----GRGAMGRGGIGG-RG--RGMIGRGRGGFGGRGRG 198
GG RGRGGPG RGGL G G M RGG GG RG RG G RGGFGG RG
Sbjct: 559 PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRG 616
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/114 (40%), Positives = 53/114 (46%), Gaps = 31/114 (27%)
Query: 110 RGLPRGGLRGGRATRTLLRGGMSLRGQ--NLLRGGRAVAPRMGLRRGGVRGRGGPGRGGL 167
RG P GG+RGGR GG+ RG + RGGR G RGG RG
Sbjct: 565 RGGP-GGMRGGR-------GGLMDRGGPGGMFRGGR------GGDRGGFRG--------- 601
Query: 168 GRGAMGRGGIGGRGRGMIGRGRG----GFGGRGRGRGRGRGALARPVLTKEQLD 217
GRG M RGG GG RG G G GGR GRG G G + + +E+ D
Sbjct: 602 GRG-MDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRG-GPGKMDKGEHRQERRD 653
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 98 GAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVR 157
G GGRG ++ RG P G RGGR RGG G+ + RGG G RRGG
Sbjct: 570 GMRGGRG-GLMDRGGPGGMFRGGRGGD---RGGFR-GGRGMDRGGFG-----GGRRGGPG 619
Query: 158 GRGGPGRGGLGRGAMGRGGIGGRGRG 183
G GP +G GRGG G +G
Sbjct: 620 GPPGPLMEQMGGRRGGRGGPGKMDKG 645
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/82 (40%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 150 GLRRGGVRGRG------GPGRGGLGRGAMGRGGI--GGRGRGMIGRG----RGGFGGRGR 197
G GG G G GP G GRG RGG+ GGRG G G G RGGF G
Sbjct: 279 GQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGG 338
Query: 198 GRGRGRGA-LARPVLTKEQLDN 218
G L PV E DN
Sbjct: 339 PMDEGPDLDLGPPVDPDEDSDN 360
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 132 SLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
S+RG R GR + P + RGG G GGPG G MGR +GGR G RGG
Sbjct: 453 SMRGGLPPREGRGMPPPL---RGGPGGPGGPG------GPMGR--MGGR-----GGDRGG 496
Query: 192 FGGRGRGRGRG 202
F RG RG
Sbjct: 497 FPPRGPRGSRG 507
Score = 35.8 bits (81), Expect = 0.036
Identities = 34/83 (40%), Positives = 38/83 (45%), Gaps = 29/83 (34%)
Query: 93 GALARGAIGG--RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAP--- 147
G + RG GG RG RG RGG RGGR + RGG GGR P
Sbjct: 577 GLMDRGGPGGMFRG----GRGGDRGGFRGGRG---MDRGGFG--------GGRRGGPGGP 621
Query: 148 ------RMGLRRGGVRGRGGPGR 164
+MG RRG GRGGPG+
Sbjct: 622 PGPLMEQMGGRRG---GRGGPGK 641
>gi|238776833 THO complex 4 [Homo sapiens]
Length = 264
Score = 49.3 bits (116), Expect = 3e-06
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 164 RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAY 223
RGG+ R G GG GG G G RG GG RGRGRG G ++ L+ E+LD QLDAY
Sbjct: 204 RGGMTRNR-GAGGFGGGG----GTRRGTRGG-ARGRGRGAGRNSKQQLSAEELDAQLDAY 257
Query: 224 MSK 226
++
Sbjct: 258 NAR 260
Score = 39.3 bits (90), Expect = 0.003
Identities = 26/51 (50%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 153 RGGVRGRGGPG-RGGLGRGA-----MGRGGIGGRGRGMIGRGRGGFGGRGR 197
RGG RGRG G +GG G GA + RGG R R I RG G GGR R
Sbjct: 30 RGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNR 80
Score = 29.6 bits (65), Expect = 2.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 173 GRGGIGGRGRGMIGRGRGGFG------GRGRGRGRGRGALAR 208
GRGG GRGR GRGG RG G R R A+AR
Sbjct: 29 GRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPAIAR 70
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 21/108 (19%)
Query: 95 LARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRG 154
L R GGRG RG R G +GGR GG A R+ G
Sbjct: 22 LNRSQRGGRGGG---RGRGRAGSQGGRG------------------GGAQAAARVNRGGG 60
Query: 155 GVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
+R R RG G G R R + + + + G G G G
Sbjct: 61 PIRNRPAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAG 108
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 48.5 bits (114), Expect = 5e-06
Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 96 ARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGG 155
++G++GG G GG GG +R GG G + GG G G
Sbjct: 39 SKGSLGG--------GFSSGGFSGGSFSRGSSGGGC-FGGSSGGYGGLG-----GFGGGS 84
Query: 156 VRGR------GGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGAL--A 207
RG GG G G G+ G G GG G G G GGFGG G G G L
Sbjct: 85 FRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGGLLSG 144
Query: 208 RPVLTKEQLDNQLDAYMSKTK 228
+T + L+++L +Y+ K +
Sbjct: 145 NEKVTMQNLNDRLASYLDKVR 165
Score = 48.5 bits (114), Expect = 5e-06
Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 18/198 (9%)
Query: 8 KVVLKSTTKMSLNE---RFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPS 64
++ LK + + SL E R+ L Q + +QQ + +N Q ++ +
Sbjct: 382 QLALKQSLEASLAETEGRYCVQLSQIQAQISALEEQLQQIRAETECQNTEYQQLLDIKIR 441
Query: 65 VQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATR 124
++ ++ +SL + G S R G G G G G G GG GG
Sbjct: 442 LENEIQTYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGG 501
Query: 125 TLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGM 184
GG S G GG + G GG GG G G+ G GG GG G G
Sbjct: 502 GSSGGGSSGGGYG---GGSSSG-----------GHGGSSSGGYGGGSSGGGG-GGYGGGS 546
Query: 185 IGRGRGGFGGRGRGRGRG 202
G G GG G G G
Sbjct: 547 SGGGSSSGGGYGGGSSSG 564
Score = 46.6 bits (109), Expect = 2e-05
Identities = 54/204 (26%), Positives = 77/204 (37%), Gaps = 26/204 (12%)
Query: 18 SLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAALK-LKQSLK 76
S T + +N Q + +++ + +Q L ++ + +QA + L++ L+
Sbjct: 360 SYKSEITELRRNVQALEIELQSQLALKQSLEASLAETEGRYCVQLSQIQAQISALEEQLQ 419
Query: 77 QRLGKS-----------NIQARLGRPIGAL-----ARGAIGGRGLPIIQRGLPRGGLRGG 120
Q ++ +I+ RL I G+ GG G RG GG GG
Sbjct: 420 QIRAETECQNTEYQQLLDIKIRLENEIQTYRSLLEGEGSSGGGG-----RG---GGSFGG 471
Query: 121 RATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGR 180
GG S G GG + G GG GG G GG G G GG
Sbjct: 472 GYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYG-GGSSSGGHGGSSSGGY 530
Query: 181 GRGMIGRGRGGFGGRGRGRGRGRG 204
G G G G GG+GG G G G
Sbjct: 531 GGGSSGGGGGGYGGGSSGGGSSSG 554
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 152 RRGGVRGRGGPGRGG--------LGRGAMGRG-GIGGRGRGMIGRGRGG---FGGRGRGR 199
R GG G GG G GG +G++G G GG G RG G FGG G
Sbjct: 15 RSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGY 74
Query: 200 G 200
G
Sbjct: 75 G 75
>gi|15431310 keratin 14 [Homo sapiens]
Length = 472
Score = 47.8 bits (112), Expect = 9e-06
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 115 GGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGR 174
GG+ GG + + + G S R + GG +V+ GG G GG GG +
Sbjct: 22 GGIGGGSSRISSVLAGGSCRAPSTYGGGLSVSSSR-FSSGGAYGLGGGYGGGFSSSSSSF 80
Query: 175 G-GIGGRGRGMIGRGRGGFGGRGRGRGRGRGAL-ARPVLTKEQLDNQLDAYMSKTKGHLD 232
G G GG G +G G GG G G G G G L +T + L+++L +Y+ K + +
Sbjct: 81 GSGFGGGYGGGLGAGLGG--GFGGGFAGGDGLLVGSEKVTMQNLNDRLASYLDKVRALEE 138
Query: 233 AELD 236
A D
Sbjct: 139 ANAD 142
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 47.4 bits (111), Expect = 1e-05
Identities = 50/132 (37%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 97 RGAIGGRGLPIIQRGLPRGGLRGGR-------ATRTLLRGGMSLRGQNLLRG-----GRA 144
RG GG+G +G PRG GG+ A R R G+ Q G G A
Sbjct: 272 RGRAGGQGGDFAVQG-PRGRRHGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVA 330
Query: 145 VAPRMGLRRGGVRGRGGPGRGGLGRGAMGRG---GIGGRG-----RGMIGRGRGGFGGRG 196
V G RRGG R R G R G+ A RG +GG+ G GRGR G R
Sbjct: 331 VHRAGGCRRGGGR-RCGHVRVGVREQASERGHGQALGGQDVLLEVEGQGGRGRPGQSLRR 389
Query: 197 RGRGRGRGALAR 208
GRG GRG AR
Sbjct: 390 SGRGHGRGIQAR 401
Score = 39.3 bits (90), Expect = 0.003
Identities = 37/96 (38%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 111 GLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG 170
G RGG R R +R S RG GG+ V L G GRG PG+ L R
Sbjct: 336 GCRRGGGRRCGHVRVGVREQASERGHGQALGGQDVL----LEVEGQGGRGRPGQ-SLRRS 390
Query: 171 AMGRG-GIGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205
G G GI R G R RG G GR G GA
Sbjct: 391 GRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGA 426
Score = 28.1 bits (61), Expect = 7.4
Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
Query: 100 IGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGR 159
+ G GL RG G +R G + G L RA R G GG RG
Sbjct: 206 VSGTGL----RGRAAGPVRLGFQAANQPLDALQFAGGRLFL--RAEFGRQGHGAGGERG- 258
Query: 160 GGPGRGGLGRGAMGRGGIGGRG-----RGMIGRGRGGFGG-------RGRGRGRGRGALA 207
G R RG GG+G +G GR GG GG R R R G GA+A
Sbjct: 259 -GAAVEFRARVHCHRGRAGGQGGDFAVQGPRGRRHGGQGGGEQTAAVRDRHRD-GVGAVA 316
Query: 208 RP 209
+P
Sbjct: 317 QP 318
>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 510
Score = 47.4 bits (111), Expect = 1e-05
Identities = 50/132 (37%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 97 RGAIGGRGLPIIQRGLPRGGLRGGR-------ATRTLLRGGMSLRGQNLLRG-----GRA 144
RG GG+G +G PRG GG+ A R R G+ Q G G A
Sbjct: 129 RGRAGGQGGDFAVQG-PRGRRHGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVA 187
Query: 145 VAPRMGLRRGGVRGRGGPGRGGLGRGAMGRG---GIGGRG-----RGMIGRGRGGFGGRG 196
V G RRGG R R G R G+ A RG +GG+ G GRGR G R
Sbjct: 188 VHRAGGCRRGGGR-RCGHVRVGVREQASERGHGQALGGQDVLLEVEGQGGRGRPGQSLRR 246
Query: 197 RGRGRGRGALAR 208
GRG GRG AR
Sbjct: 247 SGRGHGRGIQAR 258
Score = 39.3 bits (90), Expect = 0.003
Identities = 37/96 (38%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 111 GLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG 170
G RGG R R +R S RG GG+ V L G GRG PG+ L R
Sbjct: 193 GCRRGGGRRCGHVRVGVREQASERGHGQALGGQDVL----LEVEGQGGRGRPGQ-SLRRS 247
Query: 171 AMGRG-GIGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205
G G GI R G R RG G GR G GA
Sbjct: 248 GRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGA 283
Score = 28.1 bits (61), Expect = 7.4
Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
Query: 100 IGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGR 159
+ G GL RG G +R G + G L RA R G GG RG
Sbjct: 63 VSGTGL----RGRAAGPVRLGFQAANQPLDALQFAGGRLFL--RAEFGRQGHGAGGERG- 115
Query: 160 GGPGRGGLGRGAMGRGGIGGRG-----RGMIGRGRGGFGG-------RGRGRGRGRGALA 207
G R RG GG+G +G GR GG GG R R R G GA+A
Sbjct: 116 -GAAVEFRARVHCHRGRAGGQGGDFAVQGPRGRRHGGQGGGEQTAAVRDRHRD-GVGAVA 173
Query: 208 RP 209
+P
Sbjct: 174 QP 175
>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
sapiens]
Length = 457
Score = 47.4 bits (111), Expect = 1e-05
Identities = 50/132 (37%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 97 RGAIGGRGLPIIQRGLPRGGLRGGR-------ATRTLLRGGMSLRGQNLLRG-----GRA 144
RG GG+G +G PRG GG+ A R R G+ Q G G A
Sbjct: 129 RGRAGGQGGDFAVQG-PRGRRHGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVA 187
Query: 145 VAPRMGLRRGGVRGRGGPGRGGLGRGAMGRG---GIGGRG-----RGMIGRGRGGFGGRG 196
V G RRGG R R G R G+ A RG +GG+ G GRGR G R
Sbjct: 188 VHRAGGCRRGGGR-RCGHVRVGVREQASERGHGQALGGQDVLLEVEGQGGRGRPGQSLRR 246
Query: 197 RGRGRGRGALAR 208
GRG GRG AR
Sbjct: 247 SGRGHGRGIQAR 258
Score = 39.3 bits (90), Expect = 0.003
Identities = 37/96 (38%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 111 GLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG 170
G RGG R R +R S RG GG+ V L G GRG PG+ L R
Sbjct: 193 GCRRGGGRRCGHVRVGVREQASERGHGQALGGQDVL----LEVEGQGGRGRPGQ-SLRRS 247
Query: 171 AMGRG-GIGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205
G G GI R G R RG G GR G GA
Sbjct: 248 GRGHGRGIQARDTGGGPRNRGQEGTHASGRHAGEGA 283
Score = 28.1 bits (61), Expect = 7.4
Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
Query: 100 IGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGR 159
+ G GL RG G +R G + G L RA R G GG RG
Sbjct: 63 VSGTGL----RGRAAGPVRLGFQAANQPLDALQFAGGRLFL--RAEFGRQGHGAGGERG- 115
Query: 160 GGPGRGGLGRGAMGRGGIGGRG-----RGMIGRGRGGFGG-------RGRGRGRGRGALA 207
G R RG GG+G +G GR GG GG R R R G GA+A
Sbjct: 116 -GAAVEFRARVHCHRGRAGGQGGDFAVQGPRGRRHGGQGGGEQTAAVRDRHRD-GVGAVA 173
Query: 208 RP 209
+P
Sbjct: 174 QP 175
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 179 GRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAY 238
GRGRG+ RGRG GRGRGRGRGRG V+ ++ A+ + L Y
Sbjct: 827 GRGRGIHSRGRGAVHGRGRGRGRGRGVPGHAVVDHRPRALEISAFTESDREDLLPHFAQY 886
Query: 239 MAQTDPETND 248
D + +D
Sbjct: 887 GEIEDCQIDD 896
Score = 31.2 bits (69), Expect = 0.88
Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 166 GLGRG--AMGRGGIGGRGRGMIGRGRG 190
G GRG + GRG + GRGRG GRGRG
Sbjct: 827 GRGRGIHSRGRGAVHGRGRGR-GRGRG 852
Score = 28.1 bits (61), Expect = 7.4
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 146 APRMGLRRGGVRGRGGPGRGGLGRGAM-GRGGIGGRGRGMIG 186
A + G+ G RGRG RG RGA+ GRG GRGRG+ G
Sbjct: 818 AAKRGILSSG-RGRGIHSRG---RGAVHGRGRGRGRGRGVPG 855
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 47.0 bits (110), Expect = 2e-05
Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 123 TRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGG-------------PGRGGLGR 169
T T L+ S G RGG +A G G + G GG G GG
Sbjct: 2 TTTFLQTSSSTFGGGSTRGGSLLAGGGGFGGGSLSGGGGSRSISASSARFVSSGSGGGYG 61
Query: 170 GAMGRGGIGGRGRGMIGRGRGG--FGGRGRGRGRGRGAL--ARPVLTKEQLDNQLDAYMS 225
G M G GG + G G GG GG G G G G G L +T + L+++L +Y+
Sbjct: 62 GGMRVCGFGGGAGSVFGGGFGGGVGGGFGGGFGGGDGGLLSGNEKITMQNLNDRLASYLD 121
Query: 226 KTKGHLDAELD 236
K + +A D
Sbjct: 122 KVRALEEANAD 132
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/55 (56%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 142 GRAVAPRMGLRRGGVRGRGGPG-RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR 195
G + P G RGG RGRGG G RGG GRG GRGG RG G RGG GGR
Sbjct: 397 GIPLRPNRG--RGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRGGR 448
Score = 37.4 bits (85), Expect = 0.012
Identities = 28/48 (58%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 157 RGRGG-PGRGGLG-RGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
RGRGG GRGGLG RG GRGG GRG GF G RG GRG
Sbjct: 404 RGRGGYRGRGGLGFRGGRGRGG----GRGGTFTAPRGFRGGFRG-GRG 446
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 148 RMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF-----GGRGRGRGRG 202
R+ G+ R GRGG GRGG+G RG G GRGG G RG RG G
Sbjct: 390 RLNAETFGIPLRPNRGRGGY----RGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRG-G 444
Query: 203 RG 204
RG
Sbjct: 445 RG 446
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/55 (56%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 142 GRAVAPRMGLRRGGVRGRGGPG-RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR 195
G + P G RGG RGRGG G RGG GRG GRGG RG G RGG GGR
Sbjct: 397 GIPLRPNRG--RGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRGGR 448
Score = 37.4 bits (85), Expect = 0.012
Identities = 28/48 (58%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 157 RGRGG-PGRGGLG-RGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
RGRGG GRGGLG RG GRGG GRG GF G RG GRG
Sbjct: 404 RGRGGYRGRGGLGFRGGRGRGG----GRGGTFTAPRGFRGGFRG-GRG 446
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 148 RMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF-----GGRGRGRGRG 202
R+ G+ R GRGG GRGG+G RG G GRGG G RG RG G
Sbjct: 390 RLNAETFGIPLRPNRGRGGY----RGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRG-G 444
Query: 203 RG 204
RG
Sbjct: 445 RG 446
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/106 (37%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 111 GLPRGGLRGGRATRTLLRGG-MSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGR 169
G RG RGG + + RGG G N RGG RGG G GG RG G
Sbjct: 211 GSQRG--RGGGSGNFMGRGGNFGGGGGNFGRGGNFGG------RGGYGGGGGGSRGSYGG 262
Query: 170 GAMGRGGIGGRG-----------RGMIGRGRGGFGGRGRGRGRGRG 204
G G G GG G RG G G G+G +G G G G G
Sbjct: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGG 308
Score = 43.5 bits (101), Expect = 2e-04
Identities = 38/90 (42%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 124 RTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGP--GRGGLGRGAMGRGGIGGRG 181
+ L + M G RGG + MG RGG G GG GRGG G G GG GG
Sbjct: 200 KALSKQEMQSAGSQRGRGGGS-GNFMG--RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGS 256
Query: 182 RGMIGRGRG---GFGGRGRGRGRGRGALAR 208
RG G G G GFGG G G G G +R
Sbjct: 257 RGSYGGGDGGYNGFGGDGGNYGGGPGYSSR 286
Score = 35.4 bits (80), Expect = 0.046
Identities = 45/141 (31%), Positives = 50/141 (35%), Gaps = 27/141 (19%)
Query: 75 LKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLR 134
+K+ L K +Q+ RG GG G + RGG GG G R
Sbjct: 198 VKKALSKQEMQS------AGSQRGRGGGSG-----NFMGRGGNFGGGGGNFGRGGNFGGR 246
Query: 135 GQNLLRGGRAVAPRMGLRRGGVRGRGGPG-----------RGGLGRGAMGRGGIG---GR 180
G GG G GG G GG G RGG G G G G G G
Sbjct: 247 G-GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGG 305
Query: 181 GRGMIGRGRGG-FGGRGRGRG 200
G G G GG FGG G G
Sbjct: 306 GGGYDGYNEGGNFGGGNYGGG 326
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 46.2 bits (108), Expect = 3e-05
Identities = 42/98 (42%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 110 RGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPG--RGGL 167
RG RGG G R+ GG G + GG R G GG R GG G RGG
Sbjct: 408 RGGDRGGYGGDRSG-----GGY---GGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG- 458
Query: 168 GRGAMGRGGIGGRGRGMIGRGRGGFGG-RGRGRGRGRG 204
G G GG GG G G RGG+GG RG G G RG
Sbjct: 459 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG 496
Score = 45.4 bits (106), Expect = 4e-05
Identities = 37/89 (41%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 111 GLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG 170
G RGG G R RGG G + RGG G RGG G GG GG G
Sbjct: 499 GGDRGGYGGDRGGYGGDRGGY---GGDRSRGG------YGGDRGGGSGYGGDRSGGYGGD 549
Query: 171 AMGRGGIGGRGRGMIGRGRGGFGGRGRGR 199
G GG GG G G RGG+GG+ GR
Sbjct: 550 RSG-GGYGGDRGGGYGGDRGGYGGKMGGR 577
Score = 42.4 bits (98), Expect = 4e-04
Identities = 50/120 (41%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 93 GALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLR 152
G + G GG RG GG RGG GG G RGG G R
Sbjct: 445 GDRSGGGYGG------DRGGGYGGDRGGGY------GGDRGGGYGGDRGGYG-----GDR 487
Query: 153 RGGVRG-RGGPG--RGGLG--RGAMG--RGGIGG-RGRGMIGRGRGGFGGRGRGRGRGRG 204
GG G RGG G RGG G RG G RGG GG R RG G RGG G G R G G
Sbjct: 488 GGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYG 547
Score = 42.0 bits (97), Expect = 5e-04
Identities = 38/96 (39%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 115 GGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRG--GPGRGGLG--RG 170
GG G R++ G S G R G G GG RG G G GG G RG
Sbjct: 422 GGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG 481
Query: 171 AMG--RGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G RGG G RG G RGG+GG G G RG
Sbjct: 482 GYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRG 517
Score = 39.7 bits (91), Expect = 0.002
Identities = 47/125 (37%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 87 RLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVA 146
R G G G GG RG GG RGG G G RGG
Sbjct: 447 RSGGGYGGDRGGGYGG------DRGGGYGGDRGGGY-------GGDRGGYGGDRGGGYGG 493
Query: 147 PRMGLRRGGVRGRGGPGRGGLG--RGAMG----RGGIGGR---GRGMIGRGRGGFGGRGR 197
R G GG RG G RGG G RG G RGG GG G G G GG+GG
Sbjct: 494 DRGGY--GGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRS 551
Query: 198 GRGRG 202
G G G
Sbjct: 552 GGGYG 556
Score = 37.4 bits (85), Expect = 0.012
Identities = 26/53 (49%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 155 GVRGRGGPG--RGGLG--RGAMGRGGIGGRGRGMIG-RGRGGFGGRGRGRGRG 202
G RGRGG G RGG G R G GG G G G R GG+GG G G G
Sbjct: 401 GYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYG 453
Score = 35.0 bits (79), Expect = 0.061
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 52/123 (42%)
Query: 126 LLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGG-PGRGG------------------ 166
+++ + R +RGG + R G RGG RGRGG GRGG
Sbjct: 309 IIKVSFATRRPEFMRGGGSGGGRRG--RGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMN 366
Query: 167 -------------------------LGRGAMGRGGIGGRGRGMIGRG--RGGFGGRGRGR 199
GRG G G GRG GRG RGG+GG G
Sbjct: 367 FARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRG----GRGGDRGGYGGDRSGG 422
Query: 200 GRG 202
G G
Sbjct: 423 GYG 425
Score = 33.5 bits (75), Expect = 0.18
Identities = 25/51 (49%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 154 GGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRG 204
G RGRG G RG GRGG GG RG G R G GG G R G G
Sbjct: 389 GDFRGRGYGGE----RGYRGRGGRGG-DRGGYGGDRSG-GGYGGDRSSGGG 433
Score = 31.2 bits (69), Expect = 0.88
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 157 RGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
RG GG GG GRG + G G G G RGGF G R G
Sbjct: 172 RGYGGSQGGGRGRGGYDKDGRGPM-TGSSGGDRGGFKNFGGHRDYG 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,516,175
Number of Sequences: 37866
Number of extensions: 568374
Number of successful extensions: 9975
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 4457
Number of HSP's gapped (non-prelim): 2773
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.