Guide to the Human Genome
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Name: NLRP10 Sequence: fasta or formatted (655aa) NCBI GI: 28827807
Description:

NLR family, pyrin domain containing 10

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         35           2
 C cysteine            2.3         15           2
 D aspartate           4.6         30           3
 E glutamate           9.5         62           3
 F phenylalanine       4.9         32           2
 G glycine             5.3         35           2
 H histidine           2.6         17           1
 I isoleucine          3.4         22           1
 K lysine              7.9         52           2
 L leucine            13.6         89           3
 M methionine          2.0         13           1
 N asparagine          3.1         20           2
 P proline             4.1         27           2
 Q glutamine           4.9         32           1
 R arginine            5.8         38           2
 S serine              7.8         51           2
 T threonine           3.7         24           2
 V valine              5.6         37           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.6         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 10 
NLRP3                 0.257   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.257   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.257   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.257   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.257   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP12                0.249   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP1                 0.176   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.176   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.176   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.176   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP1                 0.176   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP14                0.175   NLR family, pyrin domain containing 14 
NLRP6                 0.171   NLR family, pyrin domain containing 6 
NLRP4                 0.156   NLR family, pyrin domain containing 4 
NLRP7                 0.151   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.151   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.151   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP9                 0.141   NLR family, pyrin domain containing 9 
NLRP2                 0.137   NLR family, pyrin domain containing 2 
NLRP13                0.123   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP8                 0.121   NLR family, pyrin domain containing 8 
NLRP5                 0.115   NACHT, LRR and PYD containing protein 5 
NLRP11                0.092   NLR family, pyrin domain containing 11 
NOD2                  0.061   nucleotide-binding oligomerization domain containing...
NLRC5                 0.051   nucleotide-binding oligomerization domains 27 [Homo...
NLRX1                 0.045   NLR family member X1 isoform 1 
NLRX1                 0.045   NLR family member X1 isoform 2 
CIITA                 0.042   class II transactivator 
NLRC3                 0.042   NOD3 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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