Guide to the Human Genome
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Name: NLRP9 Sequence: fasta or formatted (991aa) NCBI GI: 33519450
Description:

NLR family, pyrin domain containing 9

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         57           3
 C cysteine            4.4         44           2
 D aspartate           4.7         47           2
 E glutamate           8.1         80           2
 F phenylalanine       5.5         55           2
 G glycine             4.4         44           1
 H histidine           2.9         29           1
 I isoleucine          5.4         54           2
 K lysine              7.6         75           2
 L leucine            14.6        145           2
 M methionine          2.8         28           1
 N asparagine          3.3         33           1
 P proline             3.4         34           2
 Q glutamine           3.5         35           1
 R arginine            3.7         37           2
 S serine              7.0         69           2
 T threonine           4.4         44           2
 V valine              4.4         44           3
 W tryptophan          1.7         17           1
 Y tyrosine            2.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 9 
NLRP4                 0.384   NLR family, pyrin domain containing 4 
NLRP14                0.326   NLR family, pyrin domain containing 14 
NLRP11                0.266   NLR family, pyrin domain containing 11 
NLRP12                0.266   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP3                 0.250   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.250   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP2                 0.239   NLR family, pyrin domain containing 2 
NLRP8                 0.237   NLR family, pyrin domain containing 8 
NLRP13                0.235   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP3                 0.219   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP7                 0.214   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP3                 0.211   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP5                 0.209   NACHT, LRR and PYD containing protein 5 
NLRP7                 0.209   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP7                 0.204   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.186   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP1                 0.157   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.157   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.157   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.156   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.156   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP6                 0.108   NLR family, pyrin domain containing 6 
NLRP10                0.091   NLR family, pyrin domain containing 10 
RNH1                  0.087   ribonuclease/angiogenin inhibitor 
RNH1                  0.087   ribonuclease/angiogenin inhibitor 
RNH1                  0.087   ribonuclease/angiogenin inhibitor 
RNH1                  0.087   ribonuclease/angiogenin inhibitor 
RNH1                  0.087   ribonuclease/angiogenin inhibitor 
RNH1                  0.087   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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