CIITA 6057

Name: CIITA	Sequence: fasta or formatted (1130aa)		NCBI GI: 156938336
Description: class II transactivator		Referenced in: HLA and Related Proteins Pyrin and Associated Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.6 108 3 C cysteine 2.2 25 1 D aspartate 4.9 55 1 E glutamate 7.3 83 3 F phenylalanine 3.5 39 1 G glycine 6.9 78 2 H histidine 2.1 24 1 I isoleucine 2.4 27 1 K lysine 3.7 42 2 L leucine 14.9 168 3 M methionine 1.5 17 1 N asparagine 1.4 16 2 P proline 7.8 88 3 Q glutamine 5.6 63 3 R arginine 5.5 62 2 S serine 8.3 94 4 T threonine 4.6 52 1 V valine 4.8 54 2 W tryptophan 1.2 13 1 Y tyrosine 1.9 22 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 class II transactivator NLRC5 0.048 nucleotide-binding oligomerization domains 27 [Homo... NOD2 0.044 nucleotide-binding oligomerization domain containing... NOD1 0.042 nucleotide-binding oligomerization domain containing ... NLRP12 0.038 NLR family, pyrin domain containing 12 isoform 2 [Ho... NLRP6 0.036 NLR family, pyrin domain containing 6 NLRP7 0.034 NACHT, leucine rich repeat and PYD containing 7 iso... NLRP7 0.034 NACHT, leucine rich repeat and PYD containing 7 isof... NLRP7 0.034 NACHT, leucine rich repeat and PYD containing 7 isof... NLRP3 0.033 NLR family, pyrin domain containing 3 isoform d [Ho... NLRP3 0.032 NLR family, pyrin domain containing 3 isoform a [Ho... NLRP3 0.032 NLR family, pyrin domain containing 3 isoform a [Hom... NLRP3 0.031 NLR family, pyrin domain containing 3 isoform c [Ho... NLRP2 0.031 NLR family, pyrin domain containing 2 NLRP3 0.030 NLR family, pyrin domain containing 3 isoform b [Hom... NLRP10 0.024 NLR family, pyrin domain containing 10 NLRP1 0.023 NLR family, pyrin domain containing 1 isoform 2 [Homo... NLRP1 0.023 NLR family, pyrin domain containing 1 isoform 4 [Hom... NLRP1 0.023 NLR family, pyrin domain containing 1 isoform 5 [Hom... NLRP1 0.023 NLR family, pyrin domain containing 1 isoform 3 [Hom... NLRP1 0.023 NLR family, pyrin domain containing 1 isoform 1 [Hom... NLRC3 0.023 NOD3 protein NLRP5 0.022 NACHT, LRR and PYD containing protein 5 NLRP13 0.021 NACHT, leucine rich repeat and PYD containing 13 [H... NLRP8 0.020 NLR family, pyrin domain containing 8 NLRP9 0.017 NLR family, pyrin domain containing 9 NLRP4 0.017 NLR family, pyrin domain containing 4 NLRP14 0.014 NLR family, pyrin domain containing 14 NLRX1 0.014 NLR family member X1 isoform 1 NLRX1 0.014 NLR family member X1 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.