Guide to the Human Genome
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Name: NLRP11 Sequence: fasta or formatted (1033aa) NCBI GI: 194018484
Description:

NLR family, pyrin domain containing 11

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         54           2
 C cysteine            3.9         40           2
 D aspartate           4.5         46           1
 E glutamate           5.7         59           3
 F phenylalanine       5.0         52           2
 G glycine             4.1         42           2
 H histidine           2.3         24           2
 I isoleucine          5.5         57           2
 K lysine              5.4         56           2
 L leucine            15.2        157           2
 M methionine          3.1         32           2
 N asparagine          5.2         54           2
 P proline             3.3         34           1
 Q glutamine           3.7         38           2
 R arginine            5.2         54           2
 S serine              8.5         88           2
 T threonine           5.2         54           2
 V valine              4.8         50           2
 W tryptophan          1.1         11           1
 Y tyrosine            3.0         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NLR family, pyrin domain containing 11 
NLRP4                 0.273   NLR family, pyrin domain containing 4 
NLRP9                 0.259   NLR family, pyrin domain containing 9 
NLRP14                0.239   NLR family, pyrin domain containing 14 
NLRP13                0.192   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP12                0.178   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP3                 0.174   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.174   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP5                 0.168   NACHT, LRR and PYD containing protein 5 
NLRP2                 0.166   NLR family, pyrin domain containing 2 
NLRP7                 0.163   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP7                 0.155   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.148   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.145   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP8                 0.144   NLR family, pyrin domain containing 8 
NLRP7                 0.141   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.125   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP1                 0.110   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.110   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.110   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.110   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.110   NLR family, pyrin domain containing 1 isoform 3 [Hom...
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
RNH1                  0.082   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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