Guide to the Human Genome
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Name: NLRP13 Sequence: fasta or formatted (1043aa) NCBI GI: 110624785
Description:

NACHT, leucine rich repeat and PYD containing 13

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         60           3
 C cysteine            3.9         41           2
 D aspartate           5.2         54           2
 E glutamate           8.1         85           3
 F phenylalanine       4.8         50           3
 G glycine             4.2         44           2
 H histidine           3.2         33           1
 I isoleucine          3.7         39           3
 K lysine              6.0         63           2
 L leucine            15.4        161           2
 M methionine          2.3         24           1
 N asparagine          4.9         51           1
 P proline             3.6         38           2
 Q glutamine           5.2         54           2
 R arginine            3.8         40           2
 S serine              6.9         72           3
 T threonine           5.4         56           3
 V valine              4.2         44           2
 W tryptophan          1.7         18           1
 Y tyrosine            1.5         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NACHT, leucine rich repeat and PYD containing 13 [H... 
NLRP14                0.290   NLR family, pyrin domain containing 14 
NLRP4                 0.238   NLR family, pyrin domain containing 4 
NLRP12                0.235   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP2                 0.224   NLR family, pyrin domain containing 2 
NLRP9                 0.223   NLR family, pyrin domain containing 9 
NLRP5                 0.221   NACHT, LRR and PYD containing protein 5 
NLRP3                 0.219   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.219   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP7                 0.211   NACHT, leucine rich repeat and PYD containing 7 iso...
NLRP8                 0.209   NLR family, pyrin domain containing 8 
NLRP7                 0.207   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP3                 0.206   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.200   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP7                 0.199   NACHT, leucine rich repeat and PYD containing 7 isof...
NLRP11                0.187   NLR family, pyrin domain containing 11 
NLRP3                 0.183   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 1 [Hom...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.148   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP6                 0.096   NLR family, pyrin domain containing 6 
NLRP10                0.075   NLR family, pyrin domain containing 10 
RNH1                  0.071   ribonuclease/angiogenin inhibitor 
RNH1                  0.071   ribonuclease/angiogenin inhibitor 
RNH1                  0.071   ribonuclease/angiogenin inhibitor 
RNH1                  0.071   ribonuclease/angiogenin inhibitor 
RNH1                  0.071   ribonuclease/angiogenin inhibitor 
RNH1                  0.071   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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