Guide to the Human Genome
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Name: NLRC5 Sequence: fasta or formatted (1866aa) NCBI GI: 116268109
Description:

nucleotide-binding oligomerization domains 27

Referenced in:

Pyrin and Associated Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        141           3
 C cysteine            3.9         73           2
 D aspartate           4.4         82           3
 E glutamate           6.1        114           4
 F phenylalanine       3.2         60           2
 G glycine             6.4        119           2
 H histidine           3.6         67           2
 I isoleucine          2.4         45           1
 K lysine              3.4         63           2
 L leucine            18.5        346           3
 M methionine          1.6         30           1
 N asparagine          2.7         51           2
 P proline             5.4        100           2
 Q glutamine           6.3        118           3
 R arginine            5.1         95           2
 S serine              8.4        156           2
 T threonine           4.7         88           2
 V valine              4.8         90           2
 W tryptophan          0.8         15           1
 Y tyrosine            0.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleotide-binding oligomerization domains 27 [Homo... 
NLRC3                 0.040   NOD3 protein 
NOD2                  0.031   nucleotide-binding oligomerization domain containing...
NOD1                  0.029   nucleotide-binding oligomerization domain containing ...
CIITA                 0.029   class II transactivator 
NLRP12                0.028   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRP3                 0.021   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.021   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP5                 0.021   NACHT, LRR and PYD containing protein 5 
NLRP3                 0.019   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.019   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP14                0.019   NLR family, pyrin domain containing 14 
NLRP3                 0.018   NLR family, pyrin domain containing 3 isoform b [Hom...
NLRP10                0.018   NLR family, pyrin domain containing 10 
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 1 [Hom...
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
RNH1                  0.018   ribonuclease/angiogenin inhibitor 
C14orf166B            0.017   hypothetical protein LOC145497 
NFKBIL2               0.016   NF-kappa-B inhibitor-like protein 2 
NLRP2                 0.016   NLR family, pyrin domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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