Guide to the Human Genome
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Name: ZHX3 Sequence: fasta or formatted (956aa) NCBI GI: 28827782
Description:

zinc fingers and homeoboxes 3

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         78           2
 C cysteine            1.6         15           1
 D aspartate           4.1         39           2
 E glutamate           8.2         78           4
 F phenylalanine       2.7         26           1
 G glycine             5.9         56           3
 H histidine           2.8         27           2
 I isoleucine          3.6         34           3
 K lysine              6.2         59           2
 L leucine             7.7         74           2
 M methionine          2.2         21           1
 N asparagine          4.1         39           1
 P proline             7.7         74           2
 Q glutamine           5.8         55           3
 R arginine            3.8         36           2
 S serine              9.6         92           2
 T threonine           6.9         66           2
 V valine              6.1         58           3
 W tryptophan          1.2         11           1
 Y tyrosine            1.9         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc fingers and homeoboxes 3 
ZHX1                  0.249   zinc fingers and homeoboxes 1 
ZHX1                  0.249   zinc fingers and homeoboxes 1 
ZHX2                  0.216   zinc fingers and homeoboxes 2 
HOMEZ                 0.041   homeodomain leucine zipper protein 
ZFHX4                 0.016   zinc finger homeodomain 4 
IRX3                  0.013   iroquois homeobox 3 
ZFHX3                 0.012   AT-binding transcription factor 1 
PROP1                 0.012   PROP paired-like homeobox 1 
MUC3B                 0.012   PREDICTED: mucin 3B, cell surface associated, parti...
ZNF507                0.011   zinc finger protein 507 
ZNF507                0.011   zinc finger protein 507 
SIX4                  0.011   sine oculis homeobox homolog 4 
IRX6                  0.011   iroquois homeobox protein 6 
DMBX1                 0.011   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
DMBX1                 0.011   diencephalon/mesencephalon homeobox 1 isoform a [Hom...
NKX6-1                0.010   NK6 transcription factor related, locus 1 
IRX2                  0.009   iroquois homeobox 2 
IRX2                  0.009   iroquois homeobox 2 
IRX4                  0.009   iroquois homeobox 4 
SIX1                  0.009   SIX homeobox 1 
DDX27                 0.009   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
ZNF827                0.009   zinc finger protein 827 
SIX2                  0.008   SIX homeobox 2 
IRX1                  0.008   iroquois homeobox protein 1 
CTTNBP2NL             0.008   CTTNBP2 N-terminal like 
IRX5                  0.008   iroquois homeobox protein 5 
LHX4                  0.008   LIM homeobox protein 4 
RAX                   0.008   retina and anterior neural fold homeobox 
ZNF423                0.008   zinc finger protein 423 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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