Guide to the Human Genome
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Name: ZNF404 Sequence: fasta or formatted (552aa) NCBI GI: 154759253
Description:

zinc finger protein 404

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7         15           1
 C cysteine            6.0         33           1
 D aspartate           2.7         15           1
 E glutamate           8.2         45           2
 F phenylalanine       5.4         30           1
 G glycine             5.8         32           1
 H histidine           8.2         45           2
 I isoleucine          4.3         24           2
 K lysine             11.8         65           2
 L leucine             6.9         38           2
 M methionine          1.4          8           1
 N asparagine          2.7         15           2
 P proline             3.1         17           1
 Q glutamine           5.8         32           2
 R arginine            6.2         34           2
 S serine              5.8         32           2
 T threonine           5.1         28           2
 V valine              2.9         16           2
 W tryptophan          0.4          2           1
 Y tyrosine            4.7         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 404 
ZNF420                0.529   zinc finger protein 420 
ZNF546                0.512   zinc finger protein 546 
ZNF283                0.509   zinc finger protein 283 
ZNF571                0.492   zinc finger protein 571 
ZNF780A               0.471   zinc finger protein 780A isoform b 
ZNF780A               0.471   zinc finger protein 780A isoform b 
ZNF780A               0.470   zinc finger protein 780A isoform a 
ZNF780B               0.465   zinc finger protein 780B 
ZNF665                0.458   zinc finger protein 665 
ZNF540                0.451   zinc finger protein 540 
ZNF30                 0.450   zinc finger protein 30 isoform a 
ZNF30                 0.450   zinc finger protein 30 isoform a 
ZNF345                0.450   zinc finger protein 345 
ZNF30                 0.449   zinc finger protein 30 isoform b 
ZNF708                0.448   zinc finger protein 708 
ZNF93                 0.441   zinc finger protein 93 
ZNF429                0.438   zinc finger protein 429 
ZNF66                 0.438   PREDICTED: zinc finger protein 66 
ZNF66                 0.438   PREDICTED: zinc finger protein 66 
ZNF66                 0.438   PREDICTED: zinc finger protein 66 
ZNF85                 0.438   zinc finger protein 85 
ZNF135                0.438   zinc finger protein 135 
ZNF189                0.433   zinc finger protein 189 isoform 1 
ZNF568                0.432   zinc finger protein 568 
ZNF726                0.431   PREDICTED: zinc finger protein 726 
ZNF726                0.431   PREDICTED: zinc finger protein 726 
ZNF726                0.431   PREDICTED: zinc finger protein 726 
ZNF184                0.430   zinc finger protein 184 
ZNF470                0.430   zinc finger protein 470 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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