Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28373192
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28373192 adhesion regulating molecule 1 precursor [Homo
sapiens]
(407 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 807 0.0
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 807 0.0
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 54 3e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 54 3e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 54 3e-07
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 52 1e-06
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 52 1e-06
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 52 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 50 3e-06
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 50 4e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 5e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 49 1e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 49 1e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 48 1e-05
gi|67010025 Sp4 transcription factor [Homo sapiens] 48 2e-05
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 48 2e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 47 2e-05
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 47 3e-05
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 47 3e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 47 3e-05
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 47 3e-05
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 47 3e-05
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 47 4e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 47 4e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 47 4e-05
gi|55750053 atrophin-1 [Homo sapiens] 47 4e-05
gi|55750041 atrophin-1 [Homo sapiens] 47 4e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 46 5e-05
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 46 7e-05
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 807 bits (2084), Expect = 0.0
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
Sbjct: 1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 61 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 120
WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
Sbjct: 61 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 120
Query: 121 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
Sbjct: 121 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
Query: 181 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 240
GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
Sbjct: 181 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 240
Query: 241 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 300
SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
Sbjct: 241 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 300
Query: 301 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 360
LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
Sbjct: 301 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 360
Query: 361 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 407
LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
Sbjct: 361 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 407
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 807 bits (2084), Expect = 0.0
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC
Sbjct: 1 MTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFC 60
Query: 61 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 120
WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH
Sbjct: 61 WKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEH 120
Query: 121 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL
Sbjct: 121 CRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
Query: 181 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 240
GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT
Sbjct: 181 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 240
Query: 241 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 300
SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI
Sbjct: 241 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPI 300
Query: 301 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 360
LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG
Sbjct: 301 LANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 360
Query: 361 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 407
LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD
Sbjct: 361 LPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKDEEEDMSLD 407
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 53.5 bits (127), Expect = 3e-07
Identities = 74/256 (28%), Positives = 88/256 (34%), Gaps = 42/256 (16%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-- 188
P PG G G++G E G+ G Q + G GPAGL G G L G
Sbjct: 1002 PGPPGEQGLPGAAGKE--GAKGDPGPQGISGKD---------GPAGLRGFPGERGLPGAQ 1050
Query: 189 --PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
PGL G GPPG S R + P P P P P P
Sbjct: 1051 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLP----GRPGPQGP---------PGP 1097
Query: 247 SSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTPEIMAPILANA 304
+ GA P P +Q + + PAGPAG G+ D + P +
Sbjct: 1098 AGEKGAPGEKGPQGPAGRDGVQGPVG-LPGPAGPAGSPGEDGDKGEIGEPGQKG---SKG 1153
Query: 305 DVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMF------SAALASGQLGPLMCQ 358
D E P P G P A I P + GMF A G GP+ Q
Sbjct: 1154 DKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ 1212
Query: 359 FGLPAEAVEAANKGDV 374
GLP E GDV
Sbjct: 1213 -GLPGPPGEKGENGDV 1227
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/157 (26%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 110 QEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHE----LSALGGEGGLQSLLGNMSH 165
Q P E R + + +PGA G G G L L G+ G + G H
Sbjct: 1410 QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK---GEKGH 1466
Query: 166 SQLMQLIGPAGLGGLGGLGALTG-------------PGLASLLGSSGPPGSSSSSSSRSQ 212
L+ LIGP G G G L G PG A LG GPPG +
Sbjct: 1467 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN 1526
Query: 213 SAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSS 248
+ P+ + P +P P P SS
Sbjct: 1527 KGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSS 1563
Score = 38.1 bits (87), Expect = 0.014
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + + G G G + L GP G +G G G P
Sbjct: 675 PGQPGMAGVDGPPGPKGNM--GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP 732
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTP 218
GLA L G+ GPPG + A+ P
Sbjct: 733 GLAGLPGADGPPGHPGKEGQSGEKGALGP 761
Score = 36.2 bits (82), Expect = 0.055
Identities = 38/157 (24%), Positives = 43/157 (27%), Gaps = 33/157 (21%)
Query: 134 PGALGASGSSGHE--LSALGGEG--------GLQSLLGNMSHSQLMQLIGPAGLGGLGGL 183
PGA GA G G + G EG G Q G L + GP G GL G
Sbjct: 1377 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1436
Query: 184 GALTGP----------------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSST 221
GP G L+G GPPG R S
Sbjct: 1437 AGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRG-LPGTQGSPG 1495
Query: 222 TSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASP 258
P P+ P P P G + P
Sbjct: 1496 AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1532
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 16/125 (12%)
Query: 131 PPMPGALGASGSSGHELSA---LGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
P +PGA G G G L GG+G + + +Q ++ A + AL
Sbjct: 489 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTI-SAQEAQAQAILQQARI-------ALR 540
Query: 188 GP-GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
GP G L G GP G SS ++ +S P R P P P
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGP----QGPRGVQGPPGPTGKPGKRGRPGA 596
Query: 247 SSGNG 251
G G
Sbjct: 597 DGGRG 601
Score = 33.1 bits (74), Expect = 0.46
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 131 PPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
P +PG G G G + G+ G++ G + L GP GL LG G P
Sbjct: 618 PGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGL--LGPRGTPGAP 675
Query: 190 GLASLLGSSGPPGSSSSSSSRSQ 212
G + G GPPG + + +
Sbjct: 676 GQPGMAGVDGPPGPKGNMGPQGE 698
Score = 32.0 bits (71), Expect = 1.0
Identities = 36/135 (26%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP-GLA 192
PG G G G G +GG + + G G G G GL L G G
Sbjct: 582 PGPTGKPGKRGRP----GADGG-RGMPGEP---------GAKGDRGFDGLPGLPGDKGHR 627
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSST--------RATP-APSAPAAASATSPS 243
G GPPG R + + P R TP AP P A P
Sbjct: 628 GERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP- 686
Query: 244 PAPSSGNGASTAASP 258
P P G P
Sbjct: 687 PGPKGNMGPQGEPGP 701
Score = 32.0 bits (71), Expect = 1.0
Identities = 32/135 (23%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 131 PPMPGALGASGSSGHELSALG--GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG 188
P G +G G G E+ +G GE G + G + P G G G L
Sbjct: 798 PGFKGDMGLKGDRG-EVGQIGPRGEDGPEGPKGRAGPTG-----DPGPSGQAGEKGKLGV 851
Query: 189 PGLASLLGSSGPPGSSS-----SSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
PGL G GP GS+ ++ + V R P A +
Sbjct: 852 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 911
Query: 244 PAPSSGNGASTAASP 258
P P +G P
Sbjct: 912 PGPKGTSGGDGPPGP 926
Score = 29.6 bits (65), Expect = 5.1
Identities = 38/152 (25%), Positives = 47/152 (30%), Gaps = 25/152 (16%)
Query: 152 GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG----------------PGLASLL 195
G+ GL G + GP G GG+ G TG PG L
Sbjct: 952 GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 1011
Query: 196 GSSGPPGSSSSSSSRSQSAAVTPSSTTS--STRATP-APSAPAAASATSPS--PAPSSGN 250
G++G G+ + S P+ R P A AP P P P
Sbjct: 1012 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1071
Query: 251 GASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
G +A PI L P GPAG
Sbjct: 1072 GERGSAGTAGPIGLPGRPG----PQGPPGPAG 1099
Score = 28.9 bits (63), Expect = 8.7
Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 29/117 (24%)
Query: 173 GPAGLGGLGGLGALTG-------------PGLASLLGSSGPPGS---------------S 204
GPAG+ G GL TG PGL G GPPG+
Sbjct: 460 GPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGP 519
Query: 205 SSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQP 261
+ S+ +Q+ A+ + + R P P P S G S P P
Sbjct: 520 TISAQEAQAQAILQQARI-ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGP 575
Score = 28.9 bits (63), Expect = 8.7
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 174 PAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSA 233
P +G +GG+G PG A G+ GPPG + + + + + P
Sbjct: 1254 PGSVGSVGGVGEKGEPGEA---GNPGPPGEAGVGGPKGERGEKGEAGPPGAA-GPPGAKG 1309
Query: 234 PAAASATSPSPAP 246
P +P P
Sbjct: 1310 PPGDDGPKGNPGP 1322
Score = 28.9 bits (63), Expect = 8.7
Identities = 30/123 (24%), Positives = 36/123 (29%), Gaps = 10/123 (8%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL-GGLGALTGPGLA 192
PG G G G G GG + G + GP G G G G PG
Sbjct: 1269 PGEAGNPGPPGE-----AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1323
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGA 252
G GPPG + V P P P+ + P GA
Sbjct: 1324 GFPGDPGPPGEPGPAG----QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA 1379
Query: 253 STA 255
+ A
Sbjct: 1380 AGA 1382
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 53.5 bits (127), Expect = 3e-07
Identities = 74/256 (28%), Positives = 88/256 (34%), Gaps = 42/256 (16%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-- 188
P PG G G++G E G+ G Q + G GPAGL G G L G
Sbjct: 951 PGPPGEQGLPGAAGKE--GAKGDPGPQGISGKD---------GPAGLRGFPGERGLPGAQ 999
Query: 189 --PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
PGL G GPPG S R + P P P P P P
Sbjct: 1000 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLP----GRPGPQGP---------PGP 1046
Query: 247 SSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTPEIMAPILANA 304
+ GA P P +Q + + PAGPAG G+ D + P +
Sbjct: 1047 AGEKGAPGEKGPQGPAGRDGVQGPVG-LPGPAGPAGSPGEDGDKGEIGEPGQKG---SKG 1102
Query: 305 DVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMF------SAALASGQLGPLMCQ 358
D E P P G P A I P + GMF A G GP+ Q
Sbjct: 1103 DKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ 1161
Query: 359 FGLPAEAVEAANKGDV 374
GLP E GDV
Sbjct: 1162 -GLPGPPGEKGENGDV 1176
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/157 (26%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 110 QEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHE----LSALGGEGGLQSLLGNMSH 165
Q P E R + + +PGA G G G L L G+ G + G H
Sbjct: 1359 QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK---GEKGH 1415
Query: 166 SQLMQLIGPAGLGGLGGLGALTG-------------PGLASLLGSSGPPGSSSSSSSRSQ 212
L+ LIGP G G G L G PG A LG GPPG +
Sbjct: 1416 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN 1475
Query: 213 SAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSS 248
+ P+ + P +P P P SS
Sbjct: 1476 KGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSS 1512
Score = 38.1 bits (87), Expect = 0.014
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + + G G G + L GP G +G G G P
Sbjct: 624 PGQPGMAGVDGPPGPKGNM--GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP 681
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTP 218
GLA L G+ GPPG + A+ P
Sbjct: 682 GLAGLPGADGPPGHPGKEGQSGEKGALGP 710
Score = 36.2 bits (82), Expect = 0.055
Identities = 38/157 (24%), Positives = 43/157 (27%), Gaps = 33/157 (21%)
Query: 134 PGALGASGSSGHE--LSALGGEG--------GLQSLLGNMSHSQLMQLIGPAGLGGLGGL 183
PGA GA G G + G EG G Q G L + GP G GL G
Sbjct: 1326 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1385
Query: 184 GALTGP----------------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSST 221
GP G L+G GPPG R S
Sbjct: 1386 AGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRG-LPGTQGSPG 1444
Query: 222 TSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASP 258
P P+ P P P G + P
Sbjct: 1445 AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1481
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 16/125 (12%)
Query: 131 PPMPGALGASGSSGHELSA---LGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
P +PGA G G G L GG+G + + +Q ++ A + AL
Sbjct: 438 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTI-SAQEAQAQAILQQARI-------ALR 489
Query: 188 GP-GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
GP G L G GP G SS ++ +S P R P P P
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGP----QGPRGVQGPPGPTGKPGKRGRPGA 545
Query: 247 SSGNG 251
G G
Sbjct: 546 DGGRG 550
Score = 33.1 bits (74), Expect = 0.46
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 131 PPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
P +PG G G G + G+ G++ G + L GP GL LG G P
Sbjct: 567 PGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGL--LGPRGTPGAP 624
Query: 190 GLASLLGSSGPPGSSSSSSSRSQ 212
G + G GPPG + + +
Sbjct: 625 GQPGMAGVDGPPGPKGNMGPQGE 647
Score = 32.0 bits (71), Expect = 1.0
Identities = 36/135 (26%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP-GLA 192
PG G G G G +GG + + G G G G GL L G G
Sbjct: 531 PGPTGKPGKRGRP----GADGG-RGMPGEP---------GAKGDRGFDGLPGLPGDKGHR 576
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSST--------RATP-APSAPAAASATSPS 243
G GPPG R + + P R TP AP P A P
Sbjct: 577 GERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP- 635
Query: 244 PAPSSGNGASTAASP 258
P P G P
Sbjct: 636 PGPKGNMGPQGEPGP 650
Score = 32.0 bits (71), Expect = 1.0
Identities = 32/135 (23%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 131 PPMPGALGASGSSGHELSALG--GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG 188
P G +G G G E+ +G GE G + G + P G G G L
Sbjct: 747 PGFKGDMGLKGDRG-EVGQIGPRGEDGPEGPKGRAGPTG-----DPGPSGQAGEKGKLGV 800
Query: 189 PGLASLLGSSGPPGSSS-----SSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
PGL G GP GS+ ++ + V R P A +
Sbjct: 801 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 860
Query: 244 PAPSSGNGASTAASP 258
P P +G P
Sbjct: 861 PGPKGTSGGDGPPGP 875
Score = 29.6 bits (65), Expect = 5.1
Identities = 38/152 (25%), Positives = 47/152 (30%), Gaps = 25/152 (16%)
Query: 152 GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG----------------PGLASLL 195
G+ GL G + GP G GG+ G TG PG L
Sbjct: 901 GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 960
Query: 196 GSSGPPGSSSSSSSRSQSAAVTPSSTTS--STRATP-APSAPAAASATSPS--PAPSSGN 250
G++G G+ + S P+ R P A AP P P P
Sbjct: 961 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1020
Query: 251 GASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
G +A PI L P GPAG
Sbjct: 1021 GERGSAGTAGPIGLPGRPG----PQGPPGPAG 1048
Score = 28.9 bits (63), Expect = 8.7
Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 29/117 (24%)
Query: 173 GPAGLGGLGGLGALTG-------------PGLASLLGSSGPPGS---------------S 204
GPAG+ G GL TG PGL G GPPG+
Sbjct: 409 GPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGP 468
Query: 205 SSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQP 261
+ S+ +Q+ A+ + + R P P P S G S P P
Sbjct: 469 TISAQEAQAQAILQQARI-ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGP 524
Score = 28.9 bits (63), Expect = 8.7
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 174 PAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSA 233
P +G +GG+G PG A G+ GPPG + + + + + P
Sbjct: 1203 PGSVGSVGGVGEKGEPGEA---GNPGPPGEAGVGGPKGERGEKGEAGPPGAA-GPPGAKG 1258
Query: 234 PAAASATSPSPAP 246
P +P P
Sbjct: 1259 PPGDDGPKGNPGP 1271
Score = 28.9 bits (63), Expect = 8.7
Identities = 30/123 (24%), Positives = 36/123 (29%), Gaps = 10/123 (8%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL-GGLGALTGPGLA 192
PG G G G G GG + G + GP G G G G PG
Sbjct: 1218 PGEAGNPGPPGE-----AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1272
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGA 252
G GPPG + V P P P+ + P GA
Sbjct: 1273 GFPGDPGPPGEPGPAG----QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA 1328
Query: 253 STA 255
+ A
Sbjct: 1329 AGA 1331
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 53.5 bits (127), Expect = 3e-07
Identities = 74/256 (28%), Positives = 88/256 (34%), Gaps = 42/256 (16%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-- 188
P PG G G++G E G+ G Q + G GPAGL G G L G
Sbjct: 990 PGPPGEQGLPGAAGKE--GAKGDPGPQGISGKD---------GPAGLRGFPGERGLPGAQ 1038
Query: 189 --PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
PGL G GPPG S R + P P P P P P
Sbjct: 1039 GAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLP----GRPGPQGP---------PGP 1085
Query: 247 SSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTPEIMAPILANA 304
+ GA P P +Q + + PAGPAG G+ D + P +
Sbjct: 1086 AGEKGAPGEKGPQGPAGRDGVQGPVG-LPGPAGPAGSPGEDGDKGEIGEPGQKG---SKG 1141
Query: 305 DVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMF------SAALASGQLGPLMCQ 358
D E P P G P A I P + GMF A G GP+ Q
Sbjct: 1142 DKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ 1200
Query: 359 FGLPAEAVEAANKGDV 374
GLP E GDV
Sbjct: 1201 -GLPGPPGEKGENGDV 1215
Score = 41.6 bits (96), Expect = 0.001
Identities = 42/157 (26%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 110 QEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHE----LSALGGEGGLQSLLGNMSH 165
Q P E R + + +PGA G G G L L G+ G + G H
Sbjct: 1398 QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSK---GEKGH 1454
Query: 166 SQLMQLIGPAGLGGLGGLGALTG-------------PGLASLLGSSGPPGSSSSSSSRSQ 212
L+ LIGP G G G L G PG A LG GPPG +
Sbjct: 1455 PGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN 1514
Query: 213 SAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSS 248
+ P+ + P +P P P SS
Sbjct: 1515 KGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSS 1551
Score = 38.1 bits (87), Expect = 0.014
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + + G G G + L GP G +G G G P
Sbjct: 663 PGQPGMAGVDGPPGPKGNM--GPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP 720
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTP 218
GLA L G+ GPPG + A+ P
Sbjct: 721 GLAGLPGADGPPGHPGKEGQSGEKGALGP 749
Score = 36.2 bits (82), Expect = 0.055
Identities = 38/157 (24%), Positives = 43/157 (27%), Gaps = 33/157 (21%)
Query: 134 PGALGASGSSGHE--LSALGGEG--------GLQSLLGNMSHSQLMQLIGPAGLGGLGGL 183
PGA GA G G + G EG G Q G L + GP G GL G
Sbjct: 1365 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGA 1424
Query: 184 GALTGP----------------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSST 221
GP G L+G GPPG R S
Sbjct: 1425 AGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRG-LPGTQGSPG 1483
Query: 222 TSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASP 258
P P+ P P P G + P
Sbjct: 1484 AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1520
Score = 33.5 bits (75), Expect = 0.36
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 16/125 (12%)
Query: 131 PPMPGALGASGSSGHELSA---LGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
P +PGA G G G L GG+G + + +Q ++ A + AL
Sbjct: 477 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTI-SAQEAQAQAILQQARI-------ALR 528
Query: 188 GP-GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
GP G L G GP G SS ++ +S P R P P P
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGP----QGPRGVQGPPGPTGKPGKRGRPGA 584
Query: 247 SSGNG 251
G G
Sbjct: 585 DGGRG 589
Score = 33.1 bits (74), Expect = 0.46
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 131 PPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
P +PG G G G + G+ G++ G + L GP GL LG G P
Sbjct: 606 PGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGL--LGPRGTPGAP 663
Query: 190 GLASLLGSSGPPGSSSSSSSRSQ 212
G + G GPPG + + +
Sbjct: 664 GQPGMAGVDGPPGPKGNMGPQGE 686
Score = 32.0 bits (71), Expect = 1.0
Identities = 36/135 (26%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP-GLA 192
PG G G G G +GG + + G G G G GL L G G
Sbjct: 570 PGPTGKPGKRGRP----GADGG-RGMPGEP---------GAKGDRGFDGLPGLPGDKGHR 615
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSST--------RATP-APSAPAAASATSPS 243
G GPPG R + + P R TP AP P A P
Sbjct: 616 GERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP- 674
Query: 244 PAPSSGNGASTAASP 258
P P G P
Sbjct: 675 PGPKGNMGPQGEPGP 689
Score = 32.0 bits (71), Expect = 1.0
Identities = 32/135 (23%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 131 PPMPGALGASGSSGHELSALG--GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG 188
P G +G G G E+ +G GE G + G + P G G G L
Sbjct: 786 PGFKGDMGLKGDRG-EVGQIGPRGEDGPEGPKGRAGPTG-----DPGPSGQAGEKGKLGV 839
Query: 189 PGLASLLGSSGPPGSSS-----SSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
PGL G GP GS+ ++ + V R P A +
Sbjct: 840 PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 899
Query: 244 PAPSSGNGASTAASP 258
P P +G P
Sbjct: 900 PGPKGTSGGDGPPGP 914
Score = 29.6 bits (65), Expect = 5.1
Identities = 38/152 (25%), Positives = 47/152 (30%), Gaps = 25/152 (16%)
Query: 152 GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG----------------PGLASLL 195
G+ GL G + GP G GG+ G TG PG L
Sbjct: 940 GKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLP 999
Query: 196 GSSGPPGSSSSSSSRSQSAAVTPSSTTS--STRATP-APSAPAAASATSPS--PAPSSGN 250
G++G G+ + S P+ R P A AP P P P
Sbjct: 1000 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1059
Query: 251 GASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
G +A PI L P GPAG
Sbjct: 1060 GERGSAGTAGPIGLPGRPG----PQGPPGPAG 1087
Score = 28.9 bits (63), Expect = 8.7
Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 29/117 (24%)
Query: 173 GPAGLGGLGGLGALTG-------------PGLASLLGSSGPPGS---------------S 204
GPAG+ G GL TG PGL G GPPG+
Sbjct: 448 GPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGP 507
Query: 205 SSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQP 261
+ S+ +Q+ A+ + + R P P P S G S P P
Sbjct: 508 TISAQEAQAQAILQQARI-ALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGP 563
Score = 28.9 bits (63), Expect = 8.7
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 174 PAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSA 233
P +G +GG+G PG A G+ GPPG + + + + + P
Sbjct: 1242 PGSVGSVGGVGEKGEPGEA---GNPGPPGEAGVGGPKGERGEKGEAGPPGAA-GPPGAKG 1297
Query: 234 PAAASATSPSPAP 246
P +P P
Sbjct: 1298 PPGDDGPKGNPGP 1310
Score = 28.9 bits (63), Expect = 8.7
Identities = 30/123 (24%), Positives = 36/123 (29%), Gaps = 10/123 (8%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL-GGLGALTGPGLA 192
PG G G G G GG + G + GP G G G G PG
Sbjct: 1257 PGEAGNPGPPGE-----AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1311
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGA 252
G GPPG + V P P P+ + P GA
Sbjct: 1312 GFPGDPGPPGEPGPAG----QDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA 1367
Query: 253 STA 255
+ A
Sbjct: 1368 AGA 1370
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASL 194
G+ G GSSG+ GG GG S+ G GG GG G G G+AS
Sbjct: 81 GSGGGGGSSGNGGGGGGGGGG--------SNCNPNLAAASNGSGGGGG-GISAGGGVASS 131
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
+ GSSSSSSS S S++ + SS++SS+ P P P ++PSP ++
Sbjct: 132 TPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPV---YSTPSPVENT 182
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 216 VTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMN 275
+ P ST A+ + + + +SATS SPAPS G AS+ + +P ++ + AT+
Sbjct: 13 LVPPQPPISTSASSSGTTTSTSSATS-SPAPSIGPPASSGPTLFRPEPIASAAAAAATVT 71
Query: 276 VPAGPAGG 283
G GG
Sbjct: 72 STGGGGGG 79
Score = 34.3 bits (77), Expect = 0.21
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
P +++ SSG S+SS++S S + ++ P +++ T P P A AAA+A + +
Sbjct: 18 PPISTSASSSGTTTSTSSATS-SPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGG 76
Query: 249 GNGAST 254
G G +
Sbjct: 77 GGGGGS 82
Score = 32.3 bits (72), Expect = 0.79
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAAS 257
PP S+S+ S + SS TSS + P A + + P P S+ A+T S
Sbjct: 15 PPQPPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTS 72
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASL 194
G+ G GSSG+ GG GG S+ G GG GG G G G+AS
Sbjct: 81 GSGGGGGSSGNGGGGGGGGGG--------SNCNPNLAAASNGSGGGGG-GISAGGGVASS 131
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
+ GSSSSSSS S S++ + SS++SS+ P P P ++PSP ++
Sbjct: 132 TPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPV---YSTPSPVENT 182
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 216 VTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMN 275
+ P ST A+ + + + +SATS SPAPS G AS+ + +P ++ + AT+
Sbjct: 13 LVPPQPPISTSASSSGTTTSTSSATS-SPAPSIGPPASSGPTLFRPEPIASAAAAAATVT 71
Query: 276 VPAGPAGG 283
G GG
Sbjct: 72 STGGGGGG 79
Score = 34.3 bits (77), Expect = 0.21
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
P +++ SSG S+SS++S S + ++ P +++ T P P A AAA+A + +
Sbjct: 18 PPISTSASSSGTTTSTSSATS-SPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGG 76
Query: 249 GNGAST 254
G G +
Sbjct: 77 GGGGGS 82
Score = 32.3 bits (72), Expect = 0.79
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAAS 257
PP S+S+ S + SS TSS + P A + + P P S+ A+T S
Sbjct: 15 PPQPPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTS 72
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASL 194
G+ G GSSG+ GG GG S+ G GG GG G G G+AS
Sbjct: 81 GSGGGGGSSGNGGGGGGGGGG--------SNCNPNLAAASNGSGGGGG-GISAGGGVASS 131
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
+ GSSSSSSS S S++ + SS++SS+ P P P ++PSP ++
Sbjct: 132 TPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPV---YSTPSPVENT 182
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 216 VTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMN 275
+ P ST A+ + + + +SATS SPAPS G AS+ + +P ++ + AT+
Sbjct: 13 LVPPQPPISTSASSSGTTTSTSSATS-SPAPSIGPPASSGPTLFRPEPIASAAAAAATVT 71
Query: 276 VPAGPAGG 283
G GG
Sbjct: 72 STGGGGGG 79
Score = 34.3 bits (77), Expect = 0.21
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
P +++ SSG S+SS++S S + ++ P +++ T P P A AAA+A + +
Sbjct: 18 PPISTSASSSGTTTSTSSATS-SPAPSIGPPASSGPTLFRPEPIASAAAAAATVTSTGGG 76
Query: 249 GNGAST 254
G G +
Sbjct: 77 GGGGGS 82
Score = 32.3 bits (72), Expect = 0.79
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAAS 257
PP S+S+ S + SS TSS + P A + + P P S+ A+T S
Sbjct: 15 PPQPPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASAAAAAATVTS 72
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 50.4 bits (119), Expect = 3e-06
Identities = 73/256 (28%), Positives = 88/256 (34%), Gaps = 42/256 (16%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP---- 189
PG G G G L G G + G+ + L GP GL G G L GP
Sbjct: 1017 PGPPGPPGEQG-----LPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGAL 1071
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
GL G GPPG + S R + A P P P P P P+
Sbjct: 1072 GLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIP----GRPGPQGP---------PGPAGE 1118
Query: 250 NGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTPEIMAPILANADVQ 307
GA P P LQ + + PAGP G G+ D + P + D
Sbjct: 1119 KGAPGEKGPQGPAGRDGLQGPVG-LPGPAGPVGPPGEDGDKGEIGEPGQKG---SKGDKG 1174
Query: 308 ER-----LLPYLPSGESLPQTADEIQNTLTSPQFQQAL----GMFSAALASGQLGPLMCQ 358
E+ P P G+ P AD P+ QQ L G G GP+ Q
Sbjct: 1175 EQGPPGPTGPQGPIGQPGPSGAD----GEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQ 1230
Query: 359 FGLPAEAVEAANKGDV 374
GLP E GDV
Sbjct: 1231 -GLPGPPGEKGETGDV 1245
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/164 (27%), Positives = 56/164 (34%), Gaps = 20/164 (12%)
Query: 135 GALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG----P 189
G GA G G + L + G G Q L G+ +GP GL GL G G P
Sbjct: 1426 GPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHP 1485
Query: 190 GLASLLGSSGP---------PGSSSSSSSRSQSAAVTPSSTTS--STRATPAPSAPAAAS 238
GL L+G G PG SS + + PS P P P A
Sbjct: 1486 GLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAK 1545
Query: 239 ATSPSPAPSSGNGASTAASPTQP----IQLSDLQSILATMNVPA 278
+S P G P P IQ +Q+ N+ A
Sbjct: 1546 GSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRNIDA 1589
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + + G G G + L GP G +G G G L P
Sbjct: 693 PGPPGVTGMDGQPGPKGNV--GPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKP 750
Query: 190 GLASLLGSSGPPG 202
GL + G+ GPPG
Sbjct: 751 GLPGMPGADGPPG 763
Score = 35.0 bits (79), Expect = 0.12
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 174 PAGLGGLGGLGALTGPGLA---SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPA 230
P G+G G +G PG A L G GPPG + +S S P
Sbjct: 1272 PGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG-------PSGAAGPPG 1324
Query: 231 PSAPAAASATSPSPAP 246
P P SP P
Sbjct: 1325 PKGPPGDDGPKGSPGP 1340
Score = 33.9 bits (76), Expect = 0.27
Identities = 36/140 (25%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 134 PGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG- 188
PGA+G G G L GG G + G S GP G G G G
Sbjct: 1278 PGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGS 1337
Query: 189 ------------PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAA 236
PG G GPPG Q+ + P+ P PS P
Sbjct: 1338 PGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPT-------GEPGPSGPPG 1390
Query: 237 ASATSPSPAPSSGNGASTAA 256
P PA G A
Sbjct: 1391 KRG-PPGPAGPEGRQGEKGA 1409
Score = 32.7 bits (73), Expect = 0.61
Identities = 34/128 (26%), Positives = 38/128 (29%), Gaps = 3/128 (2%)
Query: 133 MPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-PG 190
MPG G G G + L+ L GE G + G G G G G L G PG
Sbjct: 620 MPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPG 679
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGN 250
LLG GPPG P + P P P P
Sbjct: 680 PRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNV-GPQGEPGPPGQQGNPGAQGLPGPQGAI 738
Query: 251 GASTAASP 258
G P
Sbjct: 739 GPPGEKGP 746
Score = 32.3 bits (72), Expect = 0.79
Identities = 31/121 (25%), Positives = 39/121 (32%), Gaps = 12/121 (9%)
Query: 128 LNNPPMPGALGASGSSGHELSALGGEG--GLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
L P +PG GA G GH G EG G + G + GP G+ G G+
Sbjct: 747 LGKPGLPGMPGADGPPGHP----GKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRG 802
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPA 245
L G G G PG + + P R P P + P
Sbjct: 803 L--KGTKGEKGEDGFPGFKGDMGIKGDRGEIGP----PGPRGEDGPEGPKGRGGPNGDPG 856
Query: 246 P 246
P
Sbjct: 857 P 857
Score = 30.8 bits (68), Expect = 2.3
Identities = 36/137 (26%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 134 PGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTG 188
PG GA G G L G+ G + G L L GP G G G +G +
Sbjct: 1191 PGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGP 1250
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
PG G SG PG+ P + A P P
Sbjct: 1251 PGPPGPRGPSGAPGADGPQG--PPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGER 1308
Query: 249 G----NGASTAASPTQP 261
G +G S AA P P
Sbjct: 1309 GEKGESGPSGAAGPPGP 1325
Score = 29.6 bits (65), Expect = 5.1
Identities = 34/135 (25%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 131 PPMPGALGASGSSGHELSALG--GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG 188
P G +G G G E+ G GE G + G + P LG G G L
Sbjct: 816 PGFKGDMGIKGDRG-EIGPPGPRGEDGPEGPKGRGGPNG-----DPGPLGPPGEKGKLGV 869
Query: 189 PGLASLLGSSGPPGS----SSSSSSRSQSAAVTPSST-TSSTRATPAPSAPAAASATSPS 243
PGL G GP GS ++ + TP R P +
Sbjct: 870 PGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGK 929
Query: 244 PAPSSGNGASTAASP 258
P P +G A P
Sbjct: 930 PGPKGNSGGDGPAGP 944
Score = 28.9 bits (63), Expect = 8.7
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 135 GALGASGSSGHELSALGGEG---------GLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
G G +GS G +SA + L+ G M + +GP G GGL G
Sbjct: 527 GGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPG 586
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAA 215
GP G GPPG + R ++ +
Sbjct: 587 DVGP--QGPRGVQGPPGPAGKPGRRGRAGS 614
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 50.1 bits (118), Expect = 4e-06
Identities = 48/173 (27%), Positives = 64/173 (36%), Gaps = 19/173 (10%)
Query: 112 PKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALG--GEGGLQSLLGNMSHSQLM 169
PK DQ E+ R + +PGA+G G+ G A+G G G Q G + +
Sbjct: 708 PKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKG----AMGPAGPDGHQGPRGEQGLTGMP 763
Query: 170 QLIGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP 229
+ GP G G G LTGP G G PG+ + + A T+ +
Sbjct: 764 GIRGPPGPSGDPGKPGLTGP-----QGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLT 818
Query: 230 APSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
P P A P P A P P L Q +L + P GP G
Sbjct: 819 VPGPPGPPGAMGPPGPPG-------APGPAGPAGLPGHQEVL-NLQGPPGPPG 863
Score = 40.8 bits (94), Expect = 0.002
Identities = 50/176 (28%), Positives = 66/176 (37%), Gaps = 17/176 (9%)
Query: 124 VNEYLNNPP-MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQL-MQLIGPAGLGGLG 181
+ +YL P PG GASG L +L +L MS S + + L GP G GL
Sbjct: 1100 LRQYLMGPRGPPGPPGASGDGS--LLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLP 1157
Query: 182 G------LGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP-APSAP 234
G L L G ++G GPPG + S +V S+ T P P
Sbjct: 1158 GTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPP 1217
Query: 235 AAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNV------PAGPAGGQ 284
P P +T A+ S+L S L + +V P GP G Q
Sbjct: 1218 GPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQ 1273
Score = 37.0 bits (84), Expect = 0.032
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 112 PKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQ 170
PK D + + P +PG LG G G + G+ G++ +G M
Sbjct: 571 PKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPM- 629
Query: 171 LIGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTP 218
GP G G G G G A G GPPG S + S + P
Sbjct: 630 --GPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGP 675
Score = 36.2 bits (82), Expect = 0.055
Identities = 74/293 (25%), Positives = 104/293 (35%), Gaps = 81/293 (27%)
Query: 127 YLNNPPMP-------GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGG 179
+L+ PP P G G G GH+ GE GL + S S + L GP G G
Sbjct: 903 FLSGPPGPPGPPGPKGDQGPPGPRGHQ-----GEQGLPGFSTSGSSSFGLNLQGPPGPPG 957
Query: 180 L-------------GGLGALTGP---GLASLL---------GSSGPPGSSSSSSSRSQS- 213
G LG +GP G +S + G GPPGS SSS Q
Sbjct: 958 PQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQY 1017
Query: 214 -----AAVTPSSTTSSTRATPAPSAPAAASATSP--------------SPAPSSGNGAST 254
+ + S S + P P P T S +SG G S
Sbjct: 1018 ISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTITGETFDYSELASHVVSYLRTSGYGVSL 1077
Query: 255 AASPTQPIQLSDLQSILATMNV----------PAGPAG--GQQVDLASVLTPEIMAPILA 302
+S I D+ ++L +V P GP G G D S+L+ L
Sbjct: 1078 FSS---SISSEDILAVLQRDDVRQYLRQYLMGPRGPPGPPGASGD-GSLLS-------LD 1126
Query: 303 NADVQERLLPYL-PSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGP 354
A++ R+L Y+ SG S+ L +++ L + + G +GP
Sbjct: 1127 YAELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGP 1179
Score = 34.3 bits (77), Expect = 0.21
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 190 GLASLLGSSGP---PGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
G+ + + S P PG S+SSS + PS TT S T +A SPA
Sbjct: 258 GVPNNMASCSPTLHPGLSTSSSVFGMQNNLAPSLTTLSHGTTTTSTAYGVKKNMPQSPA- 316
Query: 247 SSGNGASTAASPTQPIQLSDL 267
+ G ST+A+ T +Q DL
Sbjct: 317 AVNTGVSTSAACTTSVQSDDL 337
Score = 33.5 bits (75), Expect = 0.36
Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 3/113 (2%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-P 189
PP G G G++G G G+ +G S GP G GL GL G P
Sbjct: 637 PPGSGEKGERGAAGEP--GPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLP 694
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSP 242
G+ G GPPG + A P A A P
Sbjct: 695 GVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGP 747
Score = 33.5 bits (75), Expect = 0.36
Identities = 39/152 (25%), Positives = 51/152 (33%), Gaps = 29/152 (19%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 190
P PG G G+ G +++ G + ++ G M GP G G G L PG
Sbjct: 793 PGRPGIKGEPGAPGKIVTSEGSS--MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGL--PG 848
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGN 250
+L GPPG R P PS P P P G
Sbjct: 849 HQEVLNLQGPPG-------------------PPGPRGPPGPSIPG-----PPGPRGPPGE 884
Query: 251 GASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
G P LS+ ++ L+ P GP G
Sbjct: 885 GLPGPPGPPGSF-LSNSETFLSGPPGPPGPPG 915
Score = 32.0 bits (71), Expect = 1.0
Identities = 36/125 (28%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP- 189
P +PG G G G L G G +S+S+ L GP G G G GP
Sbjct: 870 PSIPGPPGPRGPPGEGLPGPPGPPG-----SFLSNSETF-LSGPPGPPGPPGPKGDQGPP 923
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G G G PG S+S SS P P A PS G
Sbjct: 924 GPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEG 983
Query: 250 NGAST 254
+ST
Sbjct: 984 GSSST 988
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.7 bits (117), Expect = 5e-06
Identities = 46/165 (27%), Positives = 62/165 (37%), Gaps = 21/165 (12%)
Query: 130 NPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG- 188
+P G GA G+ G + + G+ G+ L G L GP+G G G +G
Sbjct: 936 SPGADGPAGAPGTPGPQ--GIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE 993
Query: 189 ---------PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASA 239
PGLA G SG G+ + S + + T P AP A A
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 1053
Query: 240 TSP-SPAPSSGN-GASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
P PA SG+ G + A P P+ + PAGP G
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPVGPVGARG-------PAGPQG 1091
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 22/145 (15%)
Query: 133 MPGALGASGSSGHE-LSAL------GGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
+PG G G GH S L G G + G+ + +GP GL G G
Sbjct: 255 LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 314
Query: 186 LTGP-------------GLASLLGSSGPPGSSSSSSSRSQSAAVTP--SSTTSSTRATPA 230
GP G G +GPPG + ++ ++ P S R P
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 231 PSAPAAASATSPSPAPSSGNGASTA 255
P PA A+ + +P GA A
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGA 399
Score = 41.2 bits (95), Expect = 0.002
Identities = 46/163 (28%), Positives = 59/163 (36%), Gaps = 28/163 (17%)
Query: 134 PGALGASGSSGHELSALGGEG--GLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP-G 190
PG GA G +G A G +G GLQ + G + L G G G G G G
Sbjct: 703 PGNDGAKGDAGAP-GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDG 761
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSS-----TRATPAPSAPAAASAT----- 240
+ L G GPPG + + + +S P+ T + R P P PA +
Sbjct: 762 VRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 821
Query: 241 SPSPAPSSGN-GASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
P G+ GA A P P PAGP G
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAG-------------PAGPPG 851
Score = 38.9 bits (89), Expect = 0.008
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG----P 189
PG GA G +G A G G +GN+ G AG G G G P
Sbjct: 829 PGDAGAKGDAGPPGPA--GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G + G GPPG + + P+ P P PA + + P+
Sbjct: 887 GPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEV-GPPGPPGPAGEKGSPGADGPAGA 945
Query: 250 NG 251
G
Sbjct: 946 PG 947
Score = 37.7 bits (86), Expect = 0.019
Identities = 67/251 (26%), Positives = 82/251 (32%), Gaps = 35/251 (13%)
Query: 131 PPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
PP P GA G G++G L + G G L G + G G G G GP
Sbjct: 246 PPGPQGARGLPGTAG--LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP 303
Query: 190 -GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSS 248
GL G G PG + + + + A P P P+ PA P
Sbjct: 304 RGLPGERGRPGAPGPAGARGNDGATGAAGP----------PGPTGPAG------PPGFPG 347
Query: 249 GNGASTAASPTQPIQLSDLQSILATMNVP-----AGPAGGQQVDLASVLTPEIMAPILAN 303
GA A P P Q + P AGPAG D AP +A
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 304 ADVQERLLPYLPS--GESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGL 361
A P P G S PQ + A G A G+ GP+ Q G
Sbjct: 408 A-------PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ-GP 459
Query: 362 PAEAVEAANKG 372
P A E +G
Sbjct: 460 PGPAGEEGKRG 470
Score = 37.4 bits (85), Expect = 0.025
Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL-------GA 185
+PGA G +GS G G G G GP G G G+ GA
Sbjct: 534 LPGAKGLTGSPGSP-----GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA 588
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPA 245
PG A G GPPG+ + ++ A P P P+ PA PA
Sbjct: 589 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP----------PGPAGPAGERG-EQGPA 637
Query: 246 PSSG-NGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQ 284
S G G A P Q + + P GP+G +
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP-GPSGAR 676
Score = 37.4 bits (85), Expect = 0.025
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGG-LGALTGP 189
P PG G +G G + G+ G + G+ GPAG G G +G + P
Sbjct: 805 PGPPGPAGFAGPPGAD-----GQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 859
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA 235
G GS+GPPG++ + + PS P P PA
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA----GPPGPPGPA 901
Score = 37.0 bits (84), Expect = 0.032
Identities = 35/136 (25%), Positives = 43/136 (31%), Gaps = 15/136 (11%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP--- 189
+PG GA G +G + GE G Q G + GPAG G GL GP
Sbjct: 600 VPGPPGAVGPAGKD-----GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGE 654
Query: 190 -------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSP 242
G+ LG+ GP G+ + P A AP A
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA 714
Query: 243 SPAPSSGNGASTAASP 258
AP S P
Sbjct: 715 PGAPGSQGAPGLQGMP 730
Score = 36.2 bits (82), Expect = 0.055
Identities = 42/153 (27%), Positives = 51/153 (33%), Gaps = 22/153 (14%)
Query: 131 PPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
PP P GA G G SG S G G + G+ GP G G G P
Sbjct: 771 PPGPAGAPGDKGESGP--SGPAGPTGARGAPGDRGEP------GPPGPAGFAG-----PP 817
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G G+ G PG + + P+ AP A A + P P +
Sbjct: 818 GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP-PGATGF 876
Query: 250 NGASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
GA+ P P S A P GPAG
Sbjct: 877 PGAAGRVGPPGP-------SGNAGPPGPPGPAG 902
Score = 35.8 bits (81), Expect = 0.072
Identities = 36/133 (27%), Positives = 45/133 (33%), Gaps = 7/133 (5%)
Query: 128 LNNPPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGAL 186
+ N PGA GA GS+G + G G G ++ GPAG G G
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912
Query: 187 TGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
TGP A G GPPG + + A P+ TP P A P
Sbjct: 913 TGP--AGRPGEVGPPGPPGPAGEKGSPGADGPAGAP----GTPGPQGIAGQRGVVGLPGQ 966
Query: 247 SSGNGASTAASPT 259
G P+
Sbjct: 967 RGERGFPGLPGPS 979
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/157 (24%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLAS 193
PG GA G SG + G GG GN P G G GA PG
Sbjct: 409 PGFPGARGPSGPQ-----GPGGPPGPKGNSGE--------PGAPGSKGDTGAKGEPGPVG 455
Query: 194 LLGSSGPPGSSSSSSSRSQ---SAAVTPSSTTSSTRATPAPSAPAAASATSP-----SPA 245
+ G GP G +R + + P + P A A P SP
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 515
Query: 246 PSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
P+ G+ A L + + + P GP G
Sbjct: 516 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP-GPDG 551
Score = 34.7 bits (78), Expect = 0.16
Identities = 35/138 (25%), Positives = 40/138 (28%), Gaps = 13/138 (9%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-------LGGLGGL 183
P PG +G +G SG GE G G + GP G G G
Sbjct: 1051 PGAPGPVGPAGKSGDR-----GETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDR 1105
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
G G + L G GPPGS S P S A P
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGP- 1164
Query: 244 PAPSSGNGASTAASPTQP 261
P P G + P P
Sbjct: 1165 PGPRGRTGDAGPVGPPGP 1182
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/133 (25%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 135 GALGASGSSGHEL----SALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 190
G +GA G +G + GE G + + G+ S L GP G G G +GP
Sbjct: 1079 GPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 1138
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAA---VTPSSTTSSTRATPAPSAPAAASATSPSPAPS 247
G GPPGS+ + + + P T P P PS
Sbjct: 1139 -----GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS 1193
Query: 248 SGNGASTAASPTQ 260
+G S P Q
Sbjct: 1194 AGFDFSFLPQPPQ 1206
Score = 33.1 bits (74), Expect = 0.46
Identities = 35/130 (26%), Positives = 45/130 (34%), Gaps = 12/130 (9%)
Query: 131 PPMPGALGASGSSGHELSALGGE---GGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
P PG G G+ +LS E GG+ S+ G M S L GP G G G
Sbjct: 147 PGPPGPPGLGGNFAPQLSYGYDEKSTGGI-SVPGPMGPSGPRGLPGPPGAPGPQGFQGPP 205
Query: 188 G----PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
G PG + +G GPPG + ++ R P P T+
Sbjct: 206 GEPGEPGASGPMGPRGPPGPPGKNGDDGEAG----KPGRPGERGPPGPQGARGLPGTAGL 261
Query: 244 PAPSSGNGAS 253
P G S
Sbjct: 262 PGMKGHRGFS 271
Score = 29.6 bits (65), Expect = 5.1
Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 173 GPAGLGGLGGLGALTG-PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP 231
GPAG G G+ G PG G GPPG + + + S+ S P
Sbjct: 124 GPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGP 183
Query: 232 SAPAAASATSPSPAPSSGNG 251
S P +P P G
Sbjct: 184 SGPRGLPGPPGAPGPQGFQG 203
Score = 29.3 bits (64), Expect = 6.7
Identities = 37/145 (25%), Positives = 47/145 (32%), Gaps = 15/145 (10%)
Query: 131 PPMPGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGAL 186
P PG G GS G ++ G G + G G G GL G L
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
Query: 187 TG-PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA-----AASAT 240
TG PG G +GPPG + R + + P P A A
Sbjct: 541 TGSPGSPGPDGKTGPPG-PAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERG 599
Query: 241 SPSP----APSSGNGASTAASPTQP 261
P P P+ +G + A P P
Sbjct: 600 VPGPPGAVGPAGKDGEAGAQGPPGP 624
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 48.5 bits (114), Expect = 1e-05
Identities = 70/269 (26%), Positives = 86/269 (31%), Gaps = 40/269 (14%)
Query: 131 PPMP-GALGASGSSGHELSALG-----------GEGGLQSLLGNMSHSQLMQLIGPAGLG 178
PP P G LG G +G E+ LG GE GL L G + GP G
Sbjct: 912 PPGPAGVLGPQGKTG-EVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKE 970
Query: 179 GLGGLGALTGP-------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTS--STRATP 229
G GL GP G L G GPPG ++ S + + P+ +
Sbjct: 971 GPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSE 1030
Query: 230 APSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVD 287
P PA + P G P P+ P G AG G++ D
Sbjct: 1031 GPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLG-------------PPGAAGPSGEEGD 1077
Query: 288 LASVLTPEIMAPILANADVQERLLPYL--PSGESLPQTADEIQNTLTSPQFQQALGMFSA 345
V P D P + P+G P AD Q P G
Sbjct: 1078 KGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGV 1137
Query: 346 ALASGQLGPLMCQFGLPAEAVEAANKGDV 374
G +GP Q GLP E GDV
Sbjct: 1138 RGFVGVIGPPGLQ-GLPGPPGEKGEVGDV 1165
Score = 40.8 bits (94), Expect = 0.002
Identities = 38/122 (31%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 134 PGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG- 188
PG LGA G G S L G G G H L+ LIGP G G G L G
Sbjct: 1369 PGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGV 1428
Query: 189 ------------PGLASLLGSSGPPGSS---SSSSSRSQSAAVTPSSTTSSTRATPAPSA 233
PG LG GPPG + S+ ++ P T P A
Sbjct: 1429 QGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGA 1488
Query: 234 PA 235
PA
Sbjct: 1489 PA 1490
Score = 33.1 bits (74), Expect = 0.46
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 131 PPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
P PG G G+SG+ L GE G G L G G G G GP
Sbjct: 706 PGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGP 765
Query: 190 -GLASLLGSSGPPGSS 204
G A G GPPGS+
Sbjct: 766 KGQAGQAGEEGPPGSA 781
Score = 32.7 bits (73), Expect = 0.61
Identities = 40/152 (26%), Positives = 47/152 (30%), Gaps = 11/152 (7%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIG-PAGLGGLGGLGALTGPGLAS 193
G G GS+G + G+ G+ L G IG P LG +G G G
Sbjct: 773 GEEGPPGSAGEK-----GKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPG 827
Query: 194 LLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS--PAPSSGNG 251
L G GPPGS + P A P P P P G
Sbjct: 828 LEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPG 887
Query: 252 -ASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
P P Q +L P GPAG
Sbjct: 888 HQGKDGRPGHPGQRGELG--FQGQTGPPGPAG 917
Score = 32.7 bits (73), Expect = 0.61
Identities = 36/150 (24%), Positives = 47/150 (31%), Gaps = 8/150 (5%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIG-PAGLGGLGGLGALTGPGLA 192
PG G G G + S G GL LG + + G P G G +G PG +
Sbjct: 1243 PGKKGPPGEDGAKGSV--GPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGAS 1300
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGA 252
G+ GPPG S + + P P P + + P G
Sbjct: 1301 GEPGAPGPPGKRGPSGHMGREG----REGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGP 1356
Query: 253 STAASPTQPIQLSDLQSILATMNVPAGPAG 282
P+ L M P GP G
Sbjct: 1357 EGLRGIPGPVGEPGLLGAPGQMG-PPGPLG 1385
Score = 32.3 bits (72), Expect = 0.79
Identities = 30/109 (27%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGG-LGALTGPGLA 192
PG G G+ G + + G G G + L GP GL G G G PG+
Sbjct: 616 PGVTGIDGAPGAKGNV--GPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIP 673
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATS 241
L GS GP G + A P + P P TS
Sbjct: 674 GLPGSDGPLGHPGHEGPTGEKGAQGPPGSA----GPPGYPGPRGVKGTS 718
Score = 31.6 bits (70), Expect = 1.3
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 131 PPMPGALGASGSSGH--------ELSALG--GEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
P PG G G SGH E A G G G G M +GP GL G+
Sbjct: 1303 PGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGI 1362
Query: 181 GG-------LGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAV 216
G LGA G LG SG PG + + + +
Sbjct: 1363 PGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHI 1405
Score = 30.8 bits (68), Expect = 2.3
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 134 PGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGL-GGLGGLGALTGPGL 191
PG +G G G + L G+ G + G+ L L G G G G +G PG
Sbjct: 523 PGRVGKMGRPGADGARGLPGDTGPK---GDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGE 579
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAVTPSST---TSSTRATPAPSAPAAASATSP--SPAP 246
G+ GPPG + + + P + T T AP A P P P
Sbjct: 580 DGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGP 639
Query: 247 SSGNG 251
G
Sbjct: 640 PGQQG 644
Score = 29.3 bits (64), Expect = 6.7
Identities = 28/130 (21%), Positives = 40/130 (30%), Gaps = 2/130 (1%)
Query: 134 PGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGG-LGALTGPGL 191
PG G G +G E L G G +G GP G G+ G G + G
Sbjct: 1174 PGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKGD 1233
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNG 251
+ G++GPPG +V P+ P + P G
Sbjct: 1234 SGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGG 1293
Query: 252 ASTAASPTQP 261
+ +P
Sbjct: 1294 PGPPGASGEP 1303
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 48.5 bits (114), Expect = 1e-05
Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Query: 112 PKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQL 171
P+ ++ E R + +P PG G G +G L L G+ G L G+ + L
Sbjct: 1181 PQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAG--LDGLDGKDGKPGLRGDPGPAGPPGL 1238
Query: 172 IGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP 231
+GP G G G L GP G GPPGS+ + + A+ P P
Sbjct: 1239 MGPPGFKGKTGHPGLPGP--KGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPP 1296
Query: 232 SAPAAASATSPSPAPSSGNGAST-----AASPTQP 261
P S G+ +T A P QP
Sbjct: 1297 GPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQP 1331
Score = 36.2 bits (82), Expect = 0.055
Identities = 36/131 (27%), Positives = 43/131 (32%), Gaps = 20/131 (15%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQ------LMQLIGPAGLGGLGGLG 184
P PGA+G+ G G L GE GL L G+ GP GL G+ G
Sbjct: 1053 PGFPGAVGSPGLPG-----LQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGER 1107
Query: 185 ALTG-------PGLASLLGSSGPPGSSSSSSSRSQ--SAAVTPSSTTSSTRATPAPSAPA 235
TG PG G GPPG + R ++ P P P
Sbjct: 1108 GYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPP 1167
Query: 236 AASATSPSPAP 246
SP P
Sbjct: 1168 GFPGKVGSPGP 1178
Score = 34.3 bits (77), Expect = 0.21
Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLAS 193
PG G G G E G+ G L G L + G G G G G PG
Sbjct: 741 PGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPG 800
Query: 194 LLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSP 242
L G G PG + A + + P P AS + P
Sbjct: 801 LPGIQGLPGPRGPPGPTGEKGA----QGSPGVKGATGPVGPPGASVSGP 845
Score = 33.5 bits (75), Expect = 0.36
Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 15/126 (11%)
Query: 124 VNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL 183
V + P PG G G G G+ GL + G P GL G+ G
Sbjct: 734 VTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQG------------PPGLKGVQGE 781
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
G G+ G G PG+ + P T A +P A P
Sbjct: 782 PGPPGRGVQ---GPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPP 838
Query: 244 PAPSSG 249
A SG
Sbjct: 839 GASVSG 844
Score = 33.5 bits (75), Expect = 0.36
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLG---GLGALT 187
P PG+ G G+ G E A+G +G G++ GPAG+ +G GA
Sbjct: 1263 PGPPGSTGRPGAEG-EPGAMGPQGR-PGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATG 1320
Query: 188 GPGLASLLGSSGPPG 202
GLA L G GPPG
Sbjct: 1321 ERGLAGLPGQPGPPG 1335
Score = 33.1 bits (74), Expect = 0.46
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 130 NPPMPGALGASGSSG----HELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
+P +PG +G G G L GE G +G + L GP G G G +GA
Sbjct: 1492 SPGLPGQIGREGRQGLPGVRGLPGTKGEKG-DIGIGIAGENGLPGPPGPQGPPGYGKMGA 1550
Query: 186 LTGP-GLASLLGSSGPPG 202
TGP G + G GPPG
Sbjct: 1551 -TGPMGQQGIPGIPGPPG 1567
Score = 32.7 bits (73), Expect = 0.61
Identities = 34/133 (25%), Positives = 40/133 (30%), Gaps = 7/133 (5%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 190
P PG G G+ G G G L G + L G GL G G G G
Sbjct: 1472 PGRPGPPGKDGAPGRP-----GAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIG 1526
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGN 250
+A G GPPG A T P P P + PS
Sbjct: 1527 IAGENGLPGPPGPQGPPGYGKMGA--TGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCF 1584
Query: 251 GASTAASPTQPIQ 263
GA P++
Sbjct: 1585 GAMPMEQQYPPMK 1597
Score = 32.3 bits (72), Expect = 0.79
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 20/99 (20%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSL---------------LGNMSHSQLMQLIGPAGL 177
+PG+ G G G + G+GG++ + +G +GP GL
Sbjct: 391 LPGSTGEKGQKGEK-----GDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGL 445
Query: 178 GGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAV 216
G G L GP L G+ G PG S+ +
Sbjct: 446 AGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGI 484
Score = 32.0 bits (71), Expect = 1.0
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGL-GGLGGLGALTGP 189
P PG+ G G+ G++ + + LQ G +GP+GL G G G
Sbjct: 345 PGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEK 404
Query: 190 GLASLLGSSGPPG 202
G + G G PG
Sbjct: 405 GDGGIKGVPGKPG 417
Score = 30.4 bits (67), Expect = 3.0
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 130 NPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGG-LGGLGALTG 188
+P PG G G++G E G G Q G G G G G G G
Sbjct: 1336 HPGPPGEPGTDGAAGKE-----GPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGG 1390
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSST 221
PG + GS GP G + R A PS +
Sbjct: 1391 PGKS---GSMGPVGPPGPAGERGHPGAPGPSGS 1420
Score = 30.0 bits (66), Expect = 3.9
Identities = 33/138 (23%), Positives = 44/138 (31%), Gaps = 15/138 (10%)
Query: 131 PPMPGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGAL 186
P PG +G G G +SA+G +G + G + L GP G G G
Sbjct: 1287 PGPPGHVGPPGPPGQPGPAGISAVGLKGD-RGATGERGLAGLPGQPGPPGHPGPPG---- 1341
Query: 187 TGPGLASLLGSSGPPGSS---SSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSP- 242
PG G GPPG + A P P + + P
Sbjct: 1342 -EPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPV 1400
Query: 243 -SPAPSSGNGASTAASPT 259
P P+ G A P+
Sbjct: 1401 GPPGPAGERGHPGAPGPS 1418
Score = 28.9 bits (63), Expect = 8.7
Identities = 34/142 (23%), Positives = 43/142 (30%), Gaps = 23/142 (16%)
Query: 129 NNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALT 187
N+ PG +G+ G L G GL G + GP G +G G GA+
Sbjct: 1009 NSEGDPGCVGSPG--------LPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVG 1060
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP--------AAASA 239
PGL L G G G + P AT P P ++
Sbjct: 1061 SPGLPGLQGERGLTGLTGDKGEPG------PPGQPGYPGATGPPGLPGIKGERGYTGSAG 1114
Query: 240 TSPSPAPSSGNGASTAASPTQP 261
P P G P P
Sbjct: 1115 EKGEPGPPGSEGLPGPPGPAGP 1136
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 48.1 bits (113), Expect = 1e-05
Identities = 42/152 (27%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLA 192
+PG GA+G G + GE GL+ +GN P +G G GA G A
Sbjct: 641 LPGERGAAGIPGGKGEK--GEPGLRGEIGNPGRDGARG--APGAVGAPGPAGATGDRGEA 696
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGA 252
G +GP G S R + P+ A P A A P G
Sbjct: 697 GAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGP-------KGE 749
Query: 253 STAASPTQPIQLSDLQSILATMNVPAGPAGGQ 284
+ PT P+ + A N P GPAG +
Sbjct: 750 NGVVGPTGPVGAAG----PAGPNGPPGPAGSR 777
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/152 (28%), Positives = 55/152 (36%), Gaps = 34/152 (22%)
Query: 134 PGALGASGSSGHELSALG-----------GEGGLQSLLG------NMSHSQLMQLIGPAG 176
PG GA G G E+ A+G GE GL L G N + L G AG
Sbjct: 255 PGFPGAPGPKG-EIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAG 313
Query: 177 LGGLGGLGALTGP-------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSST-- 221
L G+ G L GP G L+G GP GS S ++ + + P
Sbjct: 314 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPG 373
Query: 222 TSSTRATPAPSAPAAASATSPSPAPSSGNGAS 253
S P+ A SA P P G+ S
Sbjct: 374 PSGEEGKRGPNG-EAGSAGPPGPPGLRGSPGS 404
Score = 38.1 bits (87), Expect = 0.014
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 190
P PG G G+ G + G+ G + L G + GPAG G G GP
Sbjct: 192 PGAPGVKGEPGAPGE--NGTPGQTGARGLPGERGR---VGAPGPAGARGSDGSVGPVGP- 245
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSP--SPAPSS 248
A +GS+GPPG + + + AV + P + P +P +
Sbjct: 246 -AGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANG 304
Query: 249 GNGASTAA 256
GA AA
Sbjct: 305 LTGAKGAA 312
Score = 37.4 bits (85), Expect = 0.025
Identities = 37/127 (29%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 135 GALGASGSSGHELSALG--GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-PGL 191
G G SG G A+G G G Q + G+ GP GL GL G L G PG+
Sbjct: 979 GETGPSGPVG-PAGAVGPRGPSGPQGIRGDKGEPGEK---GPRGLPGLKGHNGLQGLPGI 1034
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNG 251
A G G PGS + R + P+ T P PA P+ G
Sbjct: 1035 AGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRT-GHPGTVGPAGIRGPQGHQGPAGPPG 1093
Query: 252 ASTAASP 258
P
Sbjct: 1094 PPGPPGP 1100
Score = 37.0 bits (84), Expect = 0.032
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 173 GPAGLGG-----LGGLGALTGPGLASLLGSSGPPGSSSSSSSRS-QSAAVTPSSTTSSTR 226
GP GLGG G G GPG L+G GPPG++ + + Q A P
Sbjct: 69 GPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGE------ 122
Query: 227 ATPAPSAPAAASATSPSPAPSSGNG 251
P + PA A + P + +G
Sbjct: 123 --PGQTGPAGARGPAGPPGKAGEDG 145
Score = 37.0 bits (84), Expect = 0.032
Identities = 42/158 (26%), Positives = 50/158 (31%), Gaps = 30/158 (18%)
Query: 131 PPMPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAG----------LGG 179
P PG +G +G G L + G G G + GP G G
Sbjct: 453 PGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGH 512
Query: 180 LGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASA 239
G GA PG G+ GPPG + + P + P PS PA
Sbjct: 513 AGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGP----PGFQGLPGPSGPAGEVG 568
Query: 240 TS-----------PSPAPSSGN----GASTAASPTQPI 262
P PA G G S AA PT PI
Sbjct: 569 KPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPI 606
Score = 36.6 bits (83), Expect = 0.042
Identities = 36/123 (29%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLAS 193
PG G G G + G G Q L G + + G GL G GL PG A
Sbjct: 534 PGPQGVQGGKGEQ--GPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGL-----PGPAG 586
Query: 194 LLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAS 253
G GPPG S ++ + PS P A PS PS G
Sbjct: 587 PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPS-GPSGLPGER 645
Query: 254 TAA 256
AA
Sbjct: 646 GAA 648
Score = 36.2 bits (82), Expect = 0.055
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 130 NPPMPGALGASGSSGHELSA-LGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALT 187
+P G +G +G +G A G+ G + G ++GP G +G G G
Sbjct: 710 SPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNG 769
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA 235
PG A G GPPG + + ++ PS + P P PA
Sbjct: 770 PPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS----GPPGPPGPA 813
Score = 35.8 bits (81), Expect = 0.072
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 6/137 (4%)
Query: 130 NPPMPGALGASGSSGHELSA----LGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
NP G GA G++G A L G G+ +G + L+G G G G
Sbjct: 299 NPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESG 358
Query: 186 LTG-PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSP 244
G PG A G GP G ++ + P R +P A +
Sbjct: 359 NKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPG-PPGLRGSPGSRGLPGADGRAGVM 417
Query: 245 APSSGNGASTAASPTQP 261
P GAS A P
Sbjct: 418 GPPGSRGASGPAGVRGP 434
Score = 35.4 bits (80), Expect = 0.093
Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 173 GPAGLGGLGGLGALTGP-GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRAT--- 228
GP G+ G G TGP G + + G GPPG + R P T A
Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPP 840
Query: 229 -----PAPSAPAAASATSPSPAPSSGNGA 252
PS A + +P P GA
Sbjct: 841 GFAGEKGPSGEAGTAGPPGTPGPQGLLGA 869
Score = 34.7 bits (78), Expect = 0.16
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
N PP P G+ G G G ++ G G G S GPAG GL G
Sbjct: 768 NGPPGPAGSRGDGGPPG--MTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQ 825
Query: 188 GP-GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP 231
GP G +G+ GPPG + ++ P T AP
Sbjct: 826 GPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAP 870
Score = 34.3 bits (77), Expect = 0.21
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 12/149 (8%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLAS 193
PG GA+G +G S G G GN ++ +G AG G GL PG
Sbjct: 594 PGESGAAGPTGPIGSR--GPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGL-----PGER- 645
Query: 194 LLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAS 253
G++G PG + + A A AP A AT + A
Sbjct: 646 --GAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAG 703
Query: 254 TAASPTQPIQLSDLQSILATMNVPAGPAG 282
A P + ++ A N AGPAG
Sbjct: 704 PAGPRGSPGERGEVGP--AGPNGFAGPAG 730
Score = 32.7 bits (73), Expect = 0.61
Identities = 46/164 (28%), Positives = 53/164 (32%), Gaps = 28/164 (17%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 190
P G LGA G G L GE GL + G + P LG G GA PG
Sbjct: 861 PGPQGLLGAPGILG--LPGSRGERGLPGVAGAVGE--------PGPLGIAGPPGARGPPG 910
Query: 191 LASLLGSSGPPGSSSSSSSRSQSAAVTPSSTT--SSTRATPAPSAP-AAASATSP----S 243
G +G PG + + R P P AA A P
Sbjct: 911 AVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVG 970
Query: 244 PAPSSGNGASTAAS-PTQPIQLSDLQSILATMNVPAGPAGGQQV 286
PA GN T S P P A P GP+G Q +
Sbjct: 971 PAGKHGNRGETGPSGPVGP----------AGAVGPRGPSGPQGI 1004
Score = 32.3 bits (72), Expect = 0.79
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASL 194
GA+G G +G + GE G G L+ G GL G G L PG+A
Sbjct: 835 GAVGPPGFAGEK--GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGL--PGVAGA 890
Query: 195 LGSSGPPGSSSSSSSRSQSAAV 216
+G GP G + +R AV
Sbjct: 891 VGEPGPLGIAGPPGARGPPGAV 912
Score = 29.3 bits (64), Expect = 6.7
Identities = 29/117 (24%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 131 PPMPGALGASGSSGHELSALGGEG-GLQSLLGNMSHSQLMQLIGPAGL-GGLGGLGALTG 188
P PG G G G+ + G+G GL GP GL G G GA
Sbjct: 62 PGPPGPPGPPGLGGNFAAQYDGKGVGLGP--------------GPMGLMGPRGPPGAAGA 107
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPA 245
PG G +G PG + P P P P A
Sbjct: 108 PGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGA 164
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 47.8 bits (112), Expect = 2e-05
Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 28/248 (11%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASL 194
G G + ++G + + GL L + Q ++L+ G L A T P AS
Sbjct: 59 GTPGENQATGQQQIIIDPSQGLVQL---QNQPQQLELVTTQLAGNAWQLVASTPP--ASK 113
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP------SAPAAASATSPSPAPSS 248
+ P SSSSSSS S + + +P+ T S +TP P+ + P +
Sbjct: 114 ENNVSQPASSSSSSSSSNNGSASPTKTKSGNSSTPGQFQVIQVQNPSGSVQYQVIPQLQT 173
Query: 249 GNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLAS---VLTPEIMAPILANAD 305
G +PT L DLQ + ++ AG Q L + + I+A LAN
Sbjct: 174 VEGQQIQINPTSSSSLQDLQGQIQLIS-----AGNNQAILTAANRTASGNILAQNLANQT 228
Query: 306 VQERLLPYLP---SGESLPQTADEIQNTL--TSPQFQQALGMFSAALASGQLGPLMCQFG 360
V ++ P + ++LP T ++ TL AL + + A G G Q G
Sbjct: 229 VPVQIRPGVSIPLQLQTLPGTQAQVVTTLPINIGGVTLALPVINNVAAGGGTG----QVG 284
Query: 361 LPAEAVEA 368
PA ++
Sbjct: 285 QPAATADS 292
Score = 38.5 bits (88), Expect = 0.011
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 181 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 240
GG G + P + G+S S+ ++ + SA+ P S +SST T S +S T
Sbjct: 278 GGTGQVGQPAATADSGTSNGNQLVSTPTNTTTSASTMPESPSSSTTCTTTASTSLTSSDT 337
Query: 241 SPSPAPSSGNGASTAASPTQPIQLSDLQSILATMN--------VPAGPAGGQQVDLASVL 292
S A +G AST+AS ++ + + Q+ AT + P G Q +
Sbjct: 338 LVSSA-DTGQYASTSASSSER-TIEESQTPAATESEAQSSSQLQPNGMQNAQDQSNSLQQ 395
Query: 293 TPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQ 338
+ PIL +Q+ P +++P + ++Q+ T QQ
Sbjct: 396 VQIVGQPILQQIQIQQ---PQQQIIQAIPPQSFQLQSGQTIQTIQQ 438
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 47.8 bits (112), Expect = 2e-05
Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 13/214 (6%)
Query: 132 PMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGL 191
P P +L SG+S + G SL + + + L+ P + GL + P
Sbjct: 1488 PGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPL-LLAPTS-SHVPGLNSTVAPAC 1545
Query: 192 ASLL---GSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP-APSAPAAASATSPSPAPS 247
+ +L + P S+ + + +Q++ + P+S+ S ATP AP A + +PSPAP
Sbjct: 1546 SPVLVPASALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPP 1605
Query: 248 SGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQ 307
A SP L+ Q+ + M P+ LAS P+LA + Q
Sbjct: 1606 LAPLPVLAPSPGAAPVLASSQTPVPVM----APSSTPGTSLASASPVPAPTPVLAPSSTQ 1661
Query: 308 ERLLPYLPSGESLPQTADEIQNTLTSPQFQQALG 341
L +PS LP A Q +P LG
Sbjct: 1662 TMLPAPVPS--PLPSPA-STQTLALAPALAPTLG 1692
Score = 40.0 bits (92), Expect = 0.004
Identities = 46/166 (27%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAA---SATSPSP 244
G LAS P + SS+++ A PS S APA A +SPS
Sbjct: 1639 GTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQ 1698
Query: 245 APSSGNGASTAASPTQPIQLSDLQSIL----ATMNVPAGPAGGQQVDLASVLTPEIMAPI 300
S G G PTQ + L+ S++ T+++ GP G L+ P +AP
Sbjct: 1699 TLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPP-LAPA 1757
Query: 301 LANADVQERLLPYLPSGESLPQTADEIQNTLT-SPQFQQALGMFSA 345
L P+ S A TLT SP LG +A
Sbjct: 1758 SPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPTLGPAAA 1803
Score = 38.1 bits (87), Expect = 0.014
Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 22/165 (13%)
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPS-APAAASATSPSPAPS 247
P LA LG S P + S + Q P+ T S TPA S P A S +P P
Sbjct: 1685 PALAPTLGGSSPSQTLSLGTGNPQGPF--PTQTLS---LTPASSLVPTPAQTLSLAPGPP 1739
Query: 248 SGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQ 307
G + + +P P+ PA P G ++ A +LA A VQ
Sbjct: 1740 LGPTQTLSLAPAPPL-------------APASPVGPAPAHTLTLAPASSSASLLAPASVQ 1786
Query: 308 ERLL---PYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALAS 349
L P G + QT + SP Q + + SA+ A+
Sbjct: 1787 TLTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAA 1831
Score = 34.7 bits (78), Expect = 0.16
Identities = 53/195 (27%), Positives = 71/195 (36%), Gaps = 46/195 (23%)
Query: 197 SSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP---APS-----------APAAASATSP 242
S P G+S S+S+ + A PS ++S T P AP+ APA + P
Sbjct: 1492 SLAPSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVP 1551
Query: 243 -----SPAPSSGNGASTAASPTQPIQLSD--LQSILATMNVP------------------ 277
SP PS+ N A AS P + L + LA M P
Sbjct: 1552 ASALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPV 1611
Query: 278 AGPAGGQQVDLASVLTP-EIMAP------ILANADVQERLLPYLPSGESLPQTADEIQNT 330
P+ G LAS TP +MAP LA+A P L + + +
Sbjct: 1612 LAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSP 1671
Query: 331 LTSPQFQQALGMFSA 345
L SP Q L + A
Sbjct: 1672 LPSPASTQTLALAPA 1686
Score = 30.0 bits (66), Expect = 3.9
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATS--PSPAPSSGNGASTAAS 257
PP + + + + A T T SS PS P +AS T+ P + A AS
Sbjct: 2501 PPPACTPPPAHTPPPAQTCLVTPSSPLLLGPPSVPISASVTNLPLGLRPEAELCAQALAS 2560
Query: 258 PTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILAN-ADVQERLLPYLPS 316
P + ++L+ + S + S++ P+ + P+ V E+ L PS
Sbjct: 2561 P-ESLELASVAS--------------SETSSLSLVPPKDLLPVAVEILPVSEKNLSLTPS 2605
Query: 317 GESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPL 355
SL A I N A G L G+ PL
Sbjct: 2606 APSLTLEAGSIPNGQEQEAPDSAEGTTLTVLPEGEELPL 2644
Score = 28.9 bits (63), Expect = 8.7
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 231 PSAPAAASATSPSPAPSSGNGASTAASPTQ-PIQLSDLQSILATMNVPAGPAGGQQVDLA 289
P AP P P P +A PT P+ Q + A++ V A PAG + +
Sbjct: 1015 PRAPLGPVPVRPPPGPE------LSAQPTPGPVP----QVLPASLMVSASPAGPPLIPAS 1064
Query: 290 SVLTPEIMAPILANADVQERLLPY---LPSGESLPQT 323
P ++ P+ N+ ++LP + SG S P T
Sbjct: 1065 RPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPT 1101
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 47.4 bits (111), Expect = 2e-05
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 130 NPPMPGALGAS--GSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
NP P A G+ E S+ G S + S + G GG G T
Sbjct: 2540 NPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCG--T 2597
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPS 247
G S S +SSSSSS S S++ + SS++SS+ ++ + S+ +++S++S S + S
Sbjct: 2598 GGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2657
Query: 248 SGNGASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
S + +S+++S + D PA AG
Sbjct: 2658 SSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692
Score = 43.1 bits (100), Expect = 4e-04
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 138 GASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA-LTGPGLASLLG 196
GA S S+ G S + S ++ + G GG G G + +
Sbjct: 2553 GAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASP 2612
Query: 197 SSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAA 256
+S SSSSSSS S S++ + SS++SS+ ++ + S+ +++S++S S + SS + +S++
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Query: 257 SPTQPIQLSDLQSILATMNVPAGPA 281
+ SD ++ A P+ A
Sbjct: 2673 TDEDSSCSSDDEAAPAPTAGPSAQA 2697
Score = 42.4 bits (98), Expect = 8e-04
Identities = 38/146 (26%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 135 GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASL 194
G G G + S+ S + S S + + + +S
Sbjct: 2593 GGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2652
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAST 254
SS SSSSSSS S S SS +S A PAP+A +A A P+ A A
Sbjct: 2653 SSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARP 2712
Query: 255 AA-----------------SPTQPIQ 263
+A PTQP+Q
Sbjct: 2713 SAHSPGKKTPAPQPQAPPPQPTQPLQ 2738
Score = 29.6 bits (65), Expect = 5.1
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 169 MQLIGPAGLGGLG-GLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRA 227
++ G AGL G GL PGLA+ G +G G + S +++ V +
Sbjct: 955 LEAAGKAGLATAGPGLLPRKPPGLAA--GPAGTYGKAVSPPPSPRASPVAALKAKVIQKL 1012
Query: 228 TPAPSAPAAASATSPSPAPSSGNGASTAASP 258
PA A +PS P+S AS +P
Sbjct: 1013 EDVSKPPAYAYPATPSSHPTSPPPASPPPTP 1043
Score = 29.3 bits (64), Expect = 6.7
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 187 TGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAP 246
TG G S PG+ + R SA + P P+ A PS P
Sbjct: 2311 TGEGKDGGTAGSEEPGAKARGRGRKPSAKAKGDRAATLEEGNPTDEVPSTPLALEPSSTP 2370
Query: 247 SSGNGASTAASPTQPI 262
S SP +P+
Sbjct: 2371 GS------KKSPPEPV 2380
Score = 28.9 bits (63), Expect = 8.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 181 GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASAT 240
G L GPGL SG P S + + A + SS++SS+ ++ + S+ +++ +
Sbjct: 2523 GDLAQEPGPGLT--FEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSE 2580
Query: 241 SPSPAPSSGNG 251
+ NG
Sbjct: 2581 TEGEEEGDKNG 2591
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 47.0 bits (110), Expect = 3e-05
Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 34/204 (16%)
Query: 185 ALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAP-----------SA 233
A T P + + S P +++++++ + +AA T ++TTS+ AT AP S
Sbjct: 512 ASTAPPVPATAPSPAPAVAAAAAATTAATAAATTTTTTSAATATTAPPALDIFGDLFEST 571
Query: 234 PAAASATSPSPAPS----SGNGASTAASPTQPIQLSDLQSILATMNV-----PAGPAGGQ 284
P A+A P APS S + S+ P+ S L + L +++ PA A
Sbjct: 572 PEVAAAPKPDAAPSIDLFSTDAFSSPPQGASPVPESSLTADLLSVDAFAAPSPATTASPA 631
Query: 285 QVDLASVL------------TPEIMAPILANADVQERLLPYLPSG--ESLPQTADEIQNT 330
+VD + V+ P+ + +++ LL P QN
Sbjct: 632 KVDSSGVIDLFGDAFGSSASEPQPASQAASSSSASADLLAGFGGSFMAPSPSPVTPAQNN 691
Query: 331 LTSPQFQQALGMFSAALASGQLGP 354
L P F+ A G + +S P
Sbjct: 692 LLQPNFEAAFGTTPSTSSSSSFDP 715
Score = 43.1 bits (100), Expect = 4e-04
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 179 GLGGLGALTG-PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAA 237
G L AL+ P A + P + ++++ +A+ + S+TT+ T T A
Sbjct: 384 GEDSLAALSSVPSEAQISDPFAPEPTPPTTTAEIATASASASTTTTVTAVTAEVDLFGDA 443
Query: 238 SATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQ-----QVDLASVL 292
A SP AP++ GA+ A+PT D + N P P+ G ++DL ++
Sbjct: 444 FAASPGEAPAASEGAAAPATPTPVAAALD----ACSGNDPFAPSEGSAEAAPELDLFAMK 499
Query: 293 TPEIMAPIL 301
PE P++
Sbjct: 500 PPETSVPVV 508
Score = 35.8 bits (81), Expect = 0.072
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 201 PGSSSSSSSRSQSAAVTPSSTTSSTRATPA----PSAPAAASATSPSPAPSSGNGASTAA 256
PG++ S + S + +P++T +S +TPA S P AT+ + P S + S+
Sbjct: 290 PGNNEGSGAPSPLSKSSPATTVTSPNSTPAKTIDTSPPVDLFATASAAVPVSTSKPSSDL 349
Query: 257 SPTQPIQLSDLQSILATMNVPAGPAGGQQV--DLASVLTPEIMAPILANADVQERLLPYL 314
QP S + A P PAGG DL + ++ + + A + + P+
Sbjct: 350 LDLQP-DFSSGGAAAAAAPAPPPPAGGATAWGDLLGEDSLAALSSVPSEAQISD---PFA 405
Query: 315 PSGESLPQTADEIQNTLTS 333
P + P T EI S
Sbjct: 406 PE-PTPPTTTAEIATASAS 423
Score = 30.8 bits (68), Expect = 2.3
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 189 PGLASLLGSSG-----PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
P A+L SG P S+ ++ A+ P T+ TP S AT+PS
Sbjct: 466 PVAAALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETSVPV-VTPTASTAPPVPATAPS 524
Query: 244 PAPS-SGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMA 298
PAP+ + A+T A+ + + AT PA G + TPE+ A
Sbjct: 525 PAPAVAAAAAATTAATAAATTTTTTSAATATTAPPALDIFGDLFE----STPEVAA 576
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 47.0 bits (110), Expect = 3e-05
Identities = 42/163 (25%), Positives = 50/163 (30%), Gaps = 25/163 (15%)
Query: 130 NPPMPGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
NP PGA G G G + +GG G+ G+M + GP GL GL G+
Sbjct: 1270 NPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGLQGIKG 1329
Query: 186 LTG----PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATS 241
G PG L G GPPG P P P P
Sbjct: 1330 DQGDQGVPGAKGLPGPPGPPG---------------PYDIIKGEPGLPGPEGPPGLKGLQ 1374
Query: 242 PSPAPSSGNGASTAASPTQPIQLSDLQSILATMNV--PAGPAG 282
P P G + P + PAGP G
Sbjct: 1375 GLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPTG 1417
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/128 (29%), Positives = 51/128 (39%), Gaps = 12/128 (9%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQ----LIGPAGLGGLGGLGALTG 188
+PG G G G + + G GL G +++ L GP G GL GL L G
Sbjct: 1321 LPGLQGIKGDQGDQ--GVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGLPG 1378
Query: 189 P----GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP-AAASATSPS 243
P G+ L+G GPPG + Q + P+ T R P P P + P
Sbjct: 1379 PKGQQGVTGLVGIPGPPGIPGFDGAPGQKGEMGPAGPT-GPRGFPGPPGPDGLPGSMGPP 1437
Query: 244 PAPSSGNG 251
PS +G
Sbjct: 1438 GTPSVDHG 1445
Score = 38.9 bits (89), Expect = 0.008
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 131 PPMPGALGASGSSG-----HELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
P +PG G GS G E A+G G LQ + G L +G G+ G+G GA
Sbjct: 748 PGIPGTPGEKGSIGVPGVPGEHGAIGPPG-LQGIRGEPGPPGLPGSVGSPGVPGIGPPGA 806
Query: 186 LTGPGLASLLGSSGPPG 202
PG G SGPPG
Sbjct: 807 RGPPGGQGPPGLSGPPG 823
Score = 38.5 bits (88), Expect = 0.011
Identities = 40/164 (24%), Positives = 48/164 (29%), Gaps = 19/164 (11%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL----GAL 186
P +PG G G G S G GL + G GP G+ G G G L
Sbjct: 84 PGLPGTKGTRGPPG--ASGYPGNPGLPGIPGQDGPP------GPPGIPGCNGTKGERGPL 135
Query: 187 TGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP----APSAPAAASATSP 242
PGL G+ GPPG + P R P P P P
Sbjct: 136 GPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGP 195
Query: 243 SPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQV 286
P P P + + + P G G Q V
Sbjct: 196 VGPPGFTGPPGPPGPPGPPGEKGQMG---LSFQGPKGDKGDQGV 236
Score = 36.2 bits (82), Expect = 0.055
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP-GLA 192
PGA G G G L G G++ G L + GP G G GL +TG GL
Sbjct: 804 PGARGPPGGQGPP--GLSGPPGIKGEKGFPGFPGL-DMPGPKGDKGAQGLPGITGQSGLP 860
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP 234
L G G PG S+ + + S AP P
Sbjct: 861 GLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLP 902
Score = 35.0 bits (79), Expect = 0.12
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL---------- 180
P PGA G GS G G G + G+ M GP G GL
Sbjct: 1176 PGFPGAKGDKGSKGEV--GFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEG 1233
Query: 181 --GGLGALTGPGLASLLGSSGPPG 202
G G PGL L G GPPG
Sbjct: 1234 PKGDRGPQGQPGLPGLPGPMGPPG 1257
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/117 (26%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 130 NPPMPGALGASGSSGHE------LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL 183
+P +PG GA G G + L GE G Q + G G G+ G+ G
Sbjct: 1036 SPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPG- 1094
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQSA-----AVTPSSTTSSTRATPAPSAPA 235
PGL GS G PGS + + + TP P+ PA
Sbjct: 1095 ----SPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPA 1147
Score = 33.9 bits (76), Expect = 0.27
Identities = 41/156 (26%), Positives = 50/156 (32%), Gaps = 9/156 (5%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPG 190
P PG G +GS G + G GL G+ L GP G G G TGP
Sbjct: 549 PGQPGMTGRAGSPGRD-----GHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPP 603
Query: 191 LASLLGSSGPPGSSSSSS-SRSQSAAVTPSSTTSSTRATPAPSAPAAASAT-SPS-PAPS 247
G +GP G + + P + P P P A SP P P
Sbjct: 604 GPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQ 663
Query: 248 SGNG-ASTAASPTQPIQLSDLQSILATMNVPAGPAG 282
G T P P + + P GP G
Sbjct: 664 GDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKG 699
Score = 33.5 bits (75), Expect = 0.36
Identities = 36/150 (24%), Positives = 44/150 (29%), Gaps = 31/150 (20%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-- 188
P +PG GA G G G G+ L G+M GP G G G L G
Sbjct: 675 PGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDM---------GPPGTPGRPGFNGLPGNP 725
Query: 189 -------------PGLASLLGSSGPPGSSSSSSS------RSQSAAVTPSSTTSSTRATP 229
PGL L G G PG+ S + A+ P
Sbjct: 726 GVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPG 785
Query: 230 APSAPAAASATS-PSPAPSSGNGASTAASP 258
P P + + P P G P
Sbjct: 786 PPGLPGSVGSPGVPGIGPPGARGPPGGQGP 815
Score = 33.5 bits (75), Expect = 0.36
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL-------GGLGA 185
MPG G G+ G L + G+ GL L G + G G G+ G G
Sbjct: 838 MPGPKGDKGAQG--LPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGP 895
Query: 186 LTGPGLASLLGSSGPPGSS 204
+ PGL G G PGSS
Sbjct: 896 VGAPGLPGEKGDHGFPGSS 914
Score = 33.1 bits (74), Expect = 0.46
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 131 PPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG- 188
PP P G G GS GH G+ G Q G L +GP GL G+ G+ G
Sbjct: 1214 PPGPQGQPGLPGSPGHATEGPKGDRGPQ---GQPGLPGLPGPMGPPGLPGIDGVKGDKGN 1270
Query: 189 ---PGLASLLGSSGPPG 202
PG + G G PG
Sbjct: 1271 PGWPGAPGVPGPKGDPG 1287
Score = 32.3 bits (72), Expect = 0.79
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 145 HELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTG-PGLASLLGSSGPPGS 203
H + GE GL L G + + GP G G G TG PGL G+ GPPG+
Sbjct: 42 HGVKGQKGERGLPGLQGVIGFPGMQ---GPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGA 98
Query: 204 S 204
S
Sbjct: 99 S 99
Score = 30.0 bits (66), Expect = 3.9
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL-GALTGPGLA 192
PGA G G +L G +G G + G G G GL G PG
Sbjct: 524 PGAKGEPGEFYFDLRLKGDKGDP----GFPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSV 579
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTP 218
L G GPPG SR + P
Sbjct: 580 GLKGERGPPGGVGFPGSRGDTGPPGP 605
Score = 29.3 bits (64), Expect = 6.7
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 130 NPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTG 188
+P PG G G +G G+ G + G L GP G +GG+G G
Sbjct: 970 DPGTPGVPGKDGQAGQP-----GQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGE 1024
Query: 189 PGLASLLGSSGPPGSSSSSSSRSQSAAVTP 218
G+ + G G PG ++ + P
Sbjct: 1025 KGVPGIPGPQGSPGLPGDKGAKGEKGQAGP 1054
Score = 28.9 bits (63), Expect = 8.7
Identities = 29/99 (29%), Positives = 31/99 (31%), Gaps = 23/99 (23%)
Query: 127 YLNNPPMPGALGASGSSGHELS-----ALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLG 181
+ NP PG G G G L L GE G + G L L GP G G
Sbjct: 143 FAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFT 202
Query: 182 GLGALTGP------------------GLASLLGSSGPPG 202
G GP G G SGPPG
Sbjct: 203 GPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPG 241
Score = 28.9 bits (63), Expect = 8.7
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 135 GALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLAS 193
G +G G+ G + + + G G L G+ GP G+G G G G+A
Sbjct: 1014 GGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAG 1073
Query: 194 LLGSSGPPGSSSS 206
GS G G S
Sbjct: 1074 FPGSPGEKGEKGS 1086
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G + + P S S SR + AA P SS RA+PAP+AP AA+ T+P A S G
Sbjct: 98 GSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 250 NG 251
+G
Sbjct: 158 SG 159
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSSGNGASTAA 256
PPG S S ++ S + PS S +R PA P S+ SPAP++ A+ A
Sbjct: 93 PPGRSGSGTTFS-AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA 149
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G + + P S S SR + AA P SS RA+PAP+AP AA+ T+P A S G
Sbjct: 98 GSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 250 NG 251
+G
Sbjct: 158 SG 159
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSSGNGASTAA 256
PPG S S ++ S + PS S +R PA P S+ SPAP++ A+ A
Sbjct: 93 PPGRSGSGTTFS-AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA 149
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G + + P S S SR + AA P SS RA+PAP+AP AA+ T+P A S G
Sbjct: 98 GSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 250 NG 251
+G
Sbjct: 158 SG 159
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSSGNGASTAA 256
PPG S S ++ S + PS S +R PA P S+ SPAP++ A+ A
Sbjct: 93 PPGRSGSGTTFS-AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA 149
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
G + + P S S SR + AA P SS RA+PAP+AP AA+ T+P A S G
Sbjct: 98 GSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGG 157
Query: 250 NG 251
+G
Sbjct: 158 SG 159
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA-AASATSPSPAPSSGNGASTAA 256
PPG S S ++ S + PS S +R PA P S+ SPAP++ A+ A
Sbjct: 93 PPGRSGSGTTFS-AVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTA 149
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 46.6 bits (109), Expect = 4e-05
Identities = 41/142 (28%), Positives = 47/142 (33%), Gaps = 15/142 (10%)
Query: 134 PGALGASGSSG-------------HELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
PGA+GA G +G L L G G Q G + +GP GL GL
Sbjct: 1255 PGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGL 1314
Query: 181 -GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASA 239
G GA G L+G GPPG R S P S P
Sbjct: 1315 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP-QGSPGQKGEMGIPGASGPIGPGG 1373
Query: 240 TSPSPAPSSGNGASTAASPTQP 261
P P+ GA A P P
Sbjct: 1374 PPGLPGPAGPKGAKGATGPGGP 1395
Score = 46.2 bits (108), Expect = 5e-05
Identities = 47/167 (28%), Positives = 56/167 (33%), Gaps = 25/167 (14%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL----GALTGP 189
PG G G G L G G + G+ GPAGL G G G GP
Sbjct: 859 PGPPGPPGEQG-----LPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGP 913
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
GL G SGPPG + S R + + P P P P A+ P
Sbjct: 914 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPP----GRPGPQGPPGAAGEKGVPGEKGP 969
Query: 250 NGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTP 294
G + P+ L PAGP G G+ D V P
Sbjct: 970 IGPTGRDGVQGPVGLPG----------PAGPPGVAGEDGDKGEVGDP 1006
Score = 39.3 bits (90), Expect = 0.006
Identities = 33/118 (27%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 134 PGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
PGA G +G G L L G+ G + G H L+ LIGP G G G L GP
Sbjct: 1294 PGATGQAGPPGPVGPPGLPGLRGDAGAK---GEKGHPGLIGLIGPPGEQGEKGDRGLPGP 1350
Query: 190 -------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP 234
G + +G GPPG + + A P P P
Sbjct: 1351 QGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1408
Score = 37.7 bits (86), Expect = 0.019
Identities = 35/133 (26%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP--- 189
MPG G G G + G GL G+ + L GP G G G GP
Sbjct: 462 MPGDPGVKGDRGFD-----GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGL 516
Query: 190 ----GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPA 245
G LLG GPPG R P + + P P T P
Sbjct: 517 PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSL-GPQGEPGPPGQQGTPGTQGLPG 575
Query: 246 PSSGNGASTAASP 258
P G P
Sbjct: 576 PQGAIGPHGEKGP 588
Score = 35.4 bits (80), Expect = 0.093
Identities = 38/144 (26%), Positives = 45/144 (31%), Gaps = 21/144 (14%)
Query: 135 GALGASGSSGHELSALGGEG--GLQSLLGNMSHSQLMQLIGPAGLGGLGGL-------GA 185
G +G GS G + G EG G G+ LM G G+ GL G G+
Sbjct: 671 GEVGVPGSRGED----GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 726
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS-- 243
L PG G G G S S R + P AT A + P
Sbjct: 727 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGP 786
Query: 244 ------PAPSSGNGASTAASPTQP 261
P P NG P P
Sbjct: 787 PGERGLPGPQGPNGFPGPKGPPGP 810
Score = 33.1 bits (74), Expect = 0.46
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + S G G G L GP G +G G G P
Sbjct: 535 PGPPGVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKP 592
Query: 190 GLASLLGSSGPPG 202
GL + GS GPPG
Sbjct: 593 GLPGMPGSDGPPG 605
Score = 31.2 bits (69), Expect = 1.8
Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL----GGL 183
N PP P G G G SG + GE G +G GP G G GG+
Sbjct: 1063 NGPPGPIGLQGLPGPSGEK-----GETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGV 1117
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQ--SAAVTPSSTTSSTRATPAPSAPAAASATS 241
G L PG G SG PG + S P P P
Sbjct: 1118 GNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPK 1177
Query: 242 PSPAP 246
+P P
Sbjct: 1178 GNPGP 1182
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 171 LIGPAGLGG----LGGLGALTGPGLASLLGSSGPPGSSSSS 207
LIGP G+ G +G G PG A L GS G PG +S
Sbjct: 323 LIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTS 363
Score = 30.0 bits (66), Expect = 3.9
Identities = 29/109 (26%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
N PP P G G +GS G E G +GG G G GA+
Sbjct: 1225 NGPPGPLGKRGPAGSPGSE----GRQGGK---------------------GAKGDPGAIG 1259
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSST--RATPAPSAP 234
PG +G +GP G R +V +T P P P
Sbjct: 1260 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP 1308
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 46.6 bits (109), Expect = 4e-05
Identities = 41/142 (28%), Positives = 47/142 (33%), Gaps = 15/142 (10%)
Query: 134 PGALGASGSSG-------------HELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
PGA+GA G +G L L G G Q G + +GP GL GL
Sbjct: 1234 PGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGL 1293
Query: 181 -GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASA 239
G GA G L+G GPPG R S P S P
Sbjct: 1294 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP-QGSPGQKGEMGIPGASGPIGPGG 1352
Query: 240 TSPSPAPSSGNGASTAASPTQP 261
P P+ GA A P P
Sbjct: 1353 PPGLPGPAGPKGAKGATGPGGP 1374
Score = 46.2 bits (108), Expect = 5e-05
Identities = 47/167 (28%), Positives = 56/167 (33%), Gaps = 25/167 (14%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL----GALTGP 189
PG G G G L G G + G+ GPAGL G G G GP
Sbjct: 838 PGPPGPPGEQG-----LPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGP 892
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
GL G SGPPG + S R + + P P P P A+ P
Sbjct: 893 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPP----GRPGPQGPPGAAGEKGVPGEKGP 948
Query: 250 NGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTP 294
G + P+ L PAGP G G+ D V P
Sbjct: 949 IGPTGRDGVQGPVGLPG----------PAGPPGVAGEDGDKGEVGDP 985
Score = 39.3 bits (90), Expect = 0.006
Identities = 33/118 (27%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 134 PGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
PGA G +G G L L G+ G + G H L+ LIGP G G G L GP
Sbjct: 1273 PGATGQAGPPGPVGPPGLPGLRGDAGAK---GEKGHPGLIGLIGPPGEQGEKGDRGLPGP 1329
Query: 190 -------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP 234
G + +G GPPG + + A P P P
Sbjct: 1330 QGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1387
Score = 37.7 bits (86), Expect = 0.019
Identities = 35/133 (26%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP--- 189
MPG G G G + G GL G+ + L GP G G G GP
Sbjct: 441 MPGDPGVKGDRGFD-----GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGL 495
Query: 190 ----GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPA 245
G LLG GPPG R P + + P P T P
Sbjct: 496 PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSL-GPQGEPGPPGQQGTPGTQGLPG 554
Query: 246 PSSGNGASTAASP 258
P G P
Sbjct: 555 PQGAIGPHGEKGP 567
Score = 35.4 bits (80), Expect = 0.093
Identities = 38/144 (26%), Positives = 45/144 (31%), Gaps = 21/144 (14%)
Query: 135 GALGASGSSGHELSALGGEG--GLQSLLGNMSHSQLMQLIGPAGLGGLGGL-------GA 185
G +G GS G + G EG G G+ LM G G+ GL G G+
Sbjct: 650 GEVGVPGSRGED----GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 705
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS-- 243
L PG G G G S S R + P AT A + P
Sbjct: 706 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGP 765
Query: 244 ------PAPSSGNGASTAASPTQP 261
P P NG P P
Sbjct: 766 PGERGLPGPQGPNGFPGPKGPPGP 789
Score = 33.1 bits (74), Expect = 0.46
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + S G G G L GP G +G G G P
Sbjct: 514 PGPPGVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKP 571
Query: 190 GLASLLGSSGPPG 202
GL + GS GPPG
Sbjct: 572 GLPGMPGSDGPPG 584
Score = 31.2 bits (69), Expect = 1.8
Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL----GGL 183
N PP P G G G SG + GE G +G GP G G GG+
Sbjct: 1042 NGPPGPIGLQGLPGPSGEK-----GETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGV 1096
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQ--SAAVTPSSTTSSTRATPAPSAPAAASATS 241
G L PG G SG PG + S P P P
Sbjct: 1097 GNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPK 1156
Query: 242 PSPAP 246
+P P
Sbjct: 1157 GNPGP 1161
Score = 30.0 bits (66), Expect = 3.9
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 171 LIGPAGLGG----LGGLGALTGPGLASLLGSSGPPGSSSSS 207
LIGP G+ G +G G PG A L GS G PG +S
Sbjct: 302 LIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTS 342
Score = 30.0 bits (66), Expect = 3.9
Identities = 29/109 (26%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
N PP P G G +GS G E G +GG G G GA+
Sbjct: 1204 NGPPGPLGKRGPAGSPGSE----GRQGGK---------------------GAKGDPGAIG 1238
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSST--RATPAPSAP 234
PG +G +GP G R +V +T P P P
Sbjct: 1239 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP 1287
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 46.6 bits (109), Expect = 4e-05
Identities = 41/142 (28%), Positives = 47/142 (33%), Gaps = 15/142 (10%)
Query: 134 PGALGASGSSG-------------HELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL 180
PGA+GA G +G L L G G Q G + +GP GL GL
Sbjct: 1341 PGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGL 1400
Query: 181 -GGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASA 239
G GA G L+G GPPG R S P S P
Sbjct: 1401 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP-QGSPGQKGEMGIPGASGPIGPGG 1459
Query: 240 TSPSPAPSSGNGASTAASPTQP 261
P P+ GA A P P
Sbjct: 1460 PPGLPGPAGPKGAKGATGPGGP 1481
Score = 46.2 bits (108), Expect = 5e-05
Identities = 47/167 (28%), Positives = 56/167 (33%), Gaps = 25/167 (14%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGL----GALTGP 189
PG G G G L G G + G+ GPAGL G G G GP
Sbjct: 945 PGPPGPPGEQG-----LPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGP 999
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSG 249
GL G SGPPG + S R + + P P P P A+ P
Sbjct: 1000 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPP----GRPGPQGPPGAAGEKGVPGEKGP 1055
Query: 250 NGASTAASPTQPIQLSDLQSILATMNVPAGPAG--GQQVDLASVLTP 294
G + P+ L PAGP G G+ D V P
Sbjct: 1056 IGPTGRDGVQGPVGLPG----------PAGPPGVAGEDGDKGEVGDP 1092
Score = 39.3 bits (90), Expect = 0.006
Identities = 33/118 (27%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 134 PGALGASGSSGHE----LSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP 189
PGA G +G G L L G+ G + G H L+ LIGP G G G L GP
Sbjct: 1380 PGATGQAGPPGPVGPPGLPGLRGDAGAK---GEKGHPGLIGLIGPPGEQGEKGDRGLPGP 1436
Query: 190 -------------GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP 234
G + +G GPPG + + A P P P
Sbjct: 1437 QGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHP 1494
Score = 37.7 bits (86), Expect = 0.019
Identities = 35/133 (26%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 133 MPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGP--- 189
MPG G G G + G GL G+ + L GP G G G GP
Sbjct: 548 MPGDPGVKGDRGFD-----GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGL 602
Query: 190 ----GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPA 245
G LLG GPPG R P + + P P T P
Sbjct: 603 PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSL-GPQGEPGPPGQQGTPGTQGLPG 661
Query: 246 PSSGNGASTAASP 258
P G P
Sbjct: 662 PQGAIGPHGEKGP 674
Score = 35.4 bits (80), Expect = 0.093
Identities = 38/144 (26%), Positives = 45/144 (31%), Gaps = 21/144 (14%)
Query: 135 GALGASGSSGHELSALGGEG--GLQSLLGNMSHSQLMQLIGPAGLGGLGGL-------GA 185
G +G GS G + G EG G G+ LM G G+ GL G G+
Sbjct: 757 GEVGVPGSRGED----GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS-- 243
L PG G G G S S R + P AT A + P
Sbjct: 813 LGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGP 872
Query: 244 ------PAPSSGNGASTAASPTQP 261
P P NG P P
Sbjct: 873 PGERGLPGPQGPNGFPGPKGPPGP 896
Score = 33.9 bits (76), Expect = 0.27
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLL-------GNMSHSQLMQLIGPAGLGG---- 179
P + SG++ H L GE G ++L G LIGP G+ G
Sbjct: 362 PALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGP 421
Query: 180 LGGLGALTGPGLASLLGSSGPPGSSSSS 207
+G G PG A L GS G PG +S
Sbjct: 422 VGDPGERGPPGRAGLPGSDGAPGPPGTS 449
Score = 33.1 bits (74), Expect = 0.46
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG-LGGLGGLGALTGP 189
P PG G G G + S G G G L GP G +G G G P
Sbjct: 621 PGPPGVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKP 678
Query: 190 GLASLLGSSGPPG 202
GL + GS GPPG
Sbjct: 679 GLPGMPGSDGPPG 691
Score = 31.2 bits (69), Expect = 1.8
Identities = 34/125 (27%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL----GGL 183
N PP P G G G SG + GE G +G GP G G GG+
Sbjct: 1149 NGPPGPIGLQGLPGPSGEK-----GETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGV 1203
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQ--SAAVTPSSTTSSTRATPAPSAPAAASATS 241
G L PG G SG PG + S P P P
Sbjct: 1204 GNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPK 1263
Query: 242 PSPAP 246
+P P
Sbjct: 1264 GNPGP 1268
Score = 30.0 bits (66), Expect = 3.9
Identities = 29/109 (26%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 129 NNPPMP-GALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALT 187
N PP P G G +GS G E G +GG G G GA+
Sbjct: 1311 NGPPGPLGKRGPAGSPGSE----GRQGGK---------------------GAKGDPGAIG 1345
Query: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSST--RATPAPSAP 234
PG +G +GP G R +V +T P P P
Sbjct: 1346 APGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGP 1394
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 46.6 bits (109), Expect = 4e-05
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 171 LIGPAGLG-GLGGL--GALTGPGLASLLGSSGPPGSSSS---------SSSRSQSAAVTP 218
L P +G G+GGL G GP LA S PP SSS+ SSS S SAA +
Sbjct: 329 LPSPHAMGQGMGGLPPGPEKGPTLAPSPHSL-PPASSSAPAPPMRFPYSSSSSSSAAASS 387
Query: 219 SSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQP 261
SS++SS+ A+P P++ A S P P+S + ++ TQP
Sbjct: 388 SSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQP 430
Score = 34.7 bits (78), Expect = 0.16
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRAT-----PAPSAP-----AAASATSP 242
S G +GPP SSSS+SS S S P S S ++ P P P +A +T
Sbjct: 559 SQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVI 618
Query: 243 SPAPSSGNGASTAASPTQP 261
+ SS G TA+ P P
Sbjct: 619 ATVASSPAGYKTASPPGPP 637
Score = 33.9 bits (76), Expect = 0.27
Identities = 60/243 (24%), Positives = 90/243 (37%), Gaps = 33/243 (13%)
Query: 174 PAGLGG-LGG--LGALTGPGLASLLGSSG-----PPGSSSSSSSRSQSAAVTPSSTTSST 225
P G GG L G +G G +S+ G +G PP + S SS S A T+
Sbjct: 221 PGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPV 280
Query: 226 RATPAPSAPAAAS------ATSPSPA--PSSGNGASTAASPTQPI--QLSDLQSILATM- 274
PSAP A+ P PA P + AS QP+ L ++ M
Sbjct: 281 GGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMG 340
Query: 275 NVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSP 334
+P GP G + +P + P ++A PY S S + ++ +S
Sbjct: 341 GLPPGPEKGPTL----APSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSA 396
Query: 335 Q---FQQALGMF------SAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN-N 384
QAL + +L+ P Q LP++AV + + + + N N
Sbjct: 397 SPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSN 456
Query: 385 AKP 387
A P
Sbjct: 457 AHP 459
Score = 33.1 bits (74), Expect = 0.46
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
Query: 131 PPMPGALGASGSSGHE-----LSALGGEGGLQSLL--GNMSHSQLMQLIGPAGLGGLGGL 183
P P ++ +SG+SG + +GG G L S N H L P L L
Sbjct: 256 PTTPISVSSSGASGAPPTKPPTTPVGG-GNLPSAPPPANFPHVT-PNLPPPPALRPLNNA 313
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
A + PGL G+ PG S + Q P P+P + AS+++P+
Sbjct: 314 SA-SPPGL----GAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPA 368
Query: 244 PAP----SSGNGASTAASPTQPIQLSDLQSILATMNVPAGP 280
P SS + +S AAS + S A+ +P+ P
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYP 409
Score = 30.4 bits (67), Expect = 3.0
Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 9/208 (4%)
Query: 199 GPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASP 258
GPP + S TP + + P TSP P + S P
Sbjct: 635 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGP 694
Query: 259 TQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGE 318
P+ + + + PA PA G + +I + E +P S
Sbjct: 695 -GPLPPAGPSGLPSLPPPPAAPASGPPLS-----ATQIKQEPAEEYETPESPVPPARSPS 748
Query: 319 SLPQTADEIQNTLTSPQFQQAL--GMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEA 376
P+ D + S +F + L G S A + PL L + + K EA
Sbjct: 749 PPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGS-KLAKKRADLVEKVRREA 807
Query: 377 FAKAMQNNAKPEQKEGDTKDKKDEEEDM 404
+A + + ++E + + ++++E ++
Sbjct: 808 EQRAREEKEREREREREKEREREKEREL 835
Score = 29.6 bits (65), Expect = 5.1
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNG 251
+S SS SSSSSSS S S + S + P P++ + ++ PS +
Sbjct: 376 SSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQ 435
Query: 252 ASTAASPTQPIQLSDLQSILATMNVPAGP 280
A + P P L LA N GP
Sbjct: 436 AVWSQGPPPPPPYGRL---LANSNAHPGP 461
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 46.6 bits (109), Expect = 4e-05
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 171 LIGPAGLG-GLGGL--GALTGPGLASLLGSSGPPGSSSS---------SSSRSQSAAVTP 218
L P +G G+GGL G GP LA S PP SSS+ SSS S SAA +
Sbjct: 329 LPSPHAMGQGMGGLPPGPEKGPTLAPSPHSL-PPASSSAPAPPMRFPYSSSSSSSAAASS 387
Query: 219 SSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQP 261
SS++SS+ A+P P++ A S P P+S + ++ TQP
Sbjct: 388 SSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQP 430
Score = 34.7 bits (78), Expect = 0.16
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 193 SLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRAT-----PAPSAP-----AAASATSP 242
S G +GPP SSSS+SS S S P S S ++ P P P +A +T
Sbjct: 559 SQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVI 618
Query: 243 SPAPSSGNGASTAASPTQP 261
+ SS G TA+ P P
Sbjct: 619 ATVASSPAGYKTASPPGPP 637
Score = 33.9 bits (76), Expect = 0.27
Identities = 60/243 (24%), Positives = 90/243 (37%), Gaps = 33/243 (13%)
Query: 174 PAGLGG-LGG--LGALTGPGLASLLGSSG-----PPGSSSSSSSRSQSAAVTPSSTTSST 225
P G GG L G +G G +S+ G +G PP + S SS S A T+
Sbjct: 221 PGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPV 280
Query: 226 RATPAPSAPAAAS------ATSPSPA--PSSGNGASTAASPTQPI--QLSDLQSILATM- 274
PSAP A+ P PA P + AS QP+ L ++ M
Sbjct: 281 GGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMG 340
Query: 275 NVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSP 334
+P GP G + +P + P ++A PY S S + ++ +S
Sbjct: 341 GLPPGPEKGPTL----APSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSA 396
Query: 335 Q---FQQALGMF------SAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQN-N 384
QAL + +L+ P Q LP++AV + + + + N N
Sbjct: 397 SPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSN 456
Query: 385 AKP 387
A P
Sbjct: 457 AHP 459
Score = 33.1 bits (74), Expect = 0.46
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
Query: 131 PPMPGALGASGSSGHE-----LSALGGEGGLQSLL--GNMSHSQLMQLIGPAGLGGLGGL 183
P P ++ +SG+SG + +GG G L S N H L P L L
Sbjct: 256 PTTPISVSSSGASGAPPTKPPTTPVGG-GNLPSAPPPANFPHVT-PNLPPPPALRPLNNA 313
Query: 184 GALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPS 243
A + PGL G+ PG S + Q P P+P + AS+++P+
Sbjct: 314 SA-SPPGL----GAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPA 368
Query: 244 PAP----SSGNGASTAASPTQPIQLSDLQSILATMNVPAGP 280
P SS + +S AAS + S A+ +P+ P
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYP 409
Score = 30.4 bits (67), Expect = 3.0
Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 9/208 (4%)
Query: 199 GPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASP 258
GPP + S TP + + P TSP P + S P
Sbjct: 635 GPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGP 694
Query: 259 TQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGE 318
P+ + + + PA PA G + +I + E +P S
Sbjct: 695 -GPLPPAGPSGLPSLPPPPAAPASGPPLS-----ATQIKQEPAEEYETPESPVPPARSPS 748
Query: 319 SLPQTADEIQNTLTSPQFQQAL--GMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEA 376
P+ D + S +F + L G S A + PL L + + K EA
Sbjct: 749 PPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGS-KLAKKRADLVEKVRREA 807
Query: 377 FAKAMQNNAKPEQKEGDTKDKKDEEEDM 404
+A + + ++E + + ++++E ++
Sbjct: 808 EQRAREEKEREREREREKEREREKEREL 835
Score = 29.6 bits (65), Expect = 5.1
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNG 251
+S SS SSSSSSS S S + S + P P++ + ++ PS +
Sbjct: 376 SSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQ 435
Query: 252 ASTAASPTQPIQLSDLQSILATMNVPAGP 280
A + P P L LA N GP
Sbjct: 436 AVWSQGPPPPPPYGRL---LANSNAHPGP 461
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 46.2 bits (108), Expect = 5e-05
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNG 251
+S SS SSSSSSS S S++ + SS++SS+ ++P+P+ P + P+ G
Sbjct: 2612 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG 2671
Query: 252 ASTAASPTQPI-QLSDLQSI 270
+ SP +PI L D +S+
Sbjct: 2672 ERRSRSPRKPIDSLRDSRSL 2691
Score = 45.8 bits (107), Expect = 7e-05
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 203 SSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAASPTQP 261
SSSSSSS S S++ + SS++SS+ ++ + S+ +++S++SPSPA ASP +P
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP 2668
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Query: 112 PKTDQDEEHCRKVNEYLNNPPMPGALG-ASGSSGHELSALGGEGGLQSLLG-NMSHSQLM 169
P D+ C P+ G+ +SG+ S+ G G+ S+ + HS +
Sbjct: 2452 PSAFSDQSRCL----IAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVG 2507
Query: 170 QLIGPAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP 229
+ G L AL SS SSSSSSS S S++ + S++S + +
Sbjct: 2508 EPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Query: 230 APSAPAAASATSPSPAPS 247
P P A PSP P+
Sbjct: 2568 LPVQPEVALKRVPSPTPA 2585
Score = 41.6 bits (96), Expect = 0.001
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 20/209 (9%)
Query: 174 PAGLGGLGGLGALTGPGLASL--LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPA- 230
PA L + P + + L S P ++++ + S AV PS+ + TP
Sbjct: 2233 PAASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPTA 2292
Query: 231 ----------PSAPAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGP 280
P+A AA S T P++ N S++ +P P + + A P
Sbjct: 2293 PAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAPVNI 2352
Query: 281 AGGQQVD--LASVLTPEIMAPILANADVQERLLPYLP----SGESLPQTADEIQN-TLTS 333
AG + + LT MAP L+ A++ +P SG + P D ++ T S
Sbjct: 2353 AGSRTAAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPS 2412
Query: 334 PQFQQALGMFSAALASGQLGPLMCQFGLP 362
Q + A S ++G Q LP
Sbjct: 2413 APSQSRMTSERAPSPSSRMGQAPSQSLLP 2441
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAST 254
LG++ PP S S++ ++ + V S R AP+A A+ + S A + A T
Sbjct: 2190 LGTARPPPSMSAAGLAARMSQVPAPVPLMSLRT--APAANLASRIPAASAAAMNLASART 2247
Query: 255 AASPTQPIQLSDLQ--SILATMNV--PAGPAGGQQVDLASVLTPEIMAPILANADVQERL 310
A PT + L+D + + A MN+ P V+LA TP A LA A L
Sbjct: 2248 PAIPT-AVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPTAPAVNLAGARTPAAL 2306
Query: 311 LPYLPSGESLPQTADEIQNTLTSPQ 335
+G P TA ++ +PQ
Sbjct: 2307 AALSLTGSGTPPTAANYPSSSRTPQ 2331
Score = 38.9 bits (89), Expect = 0.008
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 178 GGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAA 237
G G+ ++ PG+ G P +S+ + S AA+ P+ S+ ++ + S+ +++
Sbjct: 2488 GDHNGMLSVPAPGVPH--SDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSS 2545
Query: 238 SATSPSPAPSSGNGASTAASPTQPIQ 263
S++S S + SSG+ +S + + P+Q
Sbjct: 2546 SSSSSSSSSSSGSSSSDSEGSSLPVQ 2571
Score = 35.8 bits (81), Expect = 0.072
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 200 PPGSSSSSSSRSQSAA---VTPSSTTSSTRATPAP---SAPAAASATSPSPAPSSGNGAS 253
PP +S + RS + + SS++ S+ +P P S A++S SP PAP+ G+
Sbjct: 393 PPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHRE 452
Query: 254 TAASPT 259
++SPT
Sbjct: 453 ISSSPT 458
Score = 33.1 bits (74), Expect = 0.46
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 16/223 (7%)
Query: 174 PAGLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSA 233
PA L L G+ T P A+ SS P + +S++ +A + + T A A
Sbjct: 2303 PAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAPVNIAGSRTAAALA 2362
Query: 234 PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQS------ILATMNVPAGPAGGQQVD 287
PA+ ++ +PA S N SP P+ + S +L P+ Q
Sbjct: 2363 PASLTSARMAPALSGAN----LTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSR 2418
Query: 288 LASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQF-----QQALGM 342
+ S P + + A Q L P S +A Q+ Q Q+L
Sbjct: 2419 MTSERAPS-PSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSS 2477
Query: 343 FSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNA 385
+ A + G +PA V ++ G+ A A Q +A
Sbjct: 2478 GAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSA 2520
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 198 SGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGASTAAS 257
S P S + RS SA SS TS +R+ A + + SP+P+SG A
Sbjct: 250 STTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAP 309
Query: 258 PTQP 261
++P
Sbjct: 310 FSEP 313
Score = 31.6 bits (70), Expect = 1.3
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 31/166 (18%)
Query: 197 SSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPS--------APAAASATSPSPAPSS 248
S+ SS +S SRS+SAA + TT+ +P+P+ AP + T+ + PSS
Sbjct: 265 SADSASSSDTSRSRSRSAAAK-THTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSS 323
Query: 249 GNGASTAASPTQPIQLSDLQSILATMNVPA------GPA------------GGQQVDLAS 290
A+ S + D + AT P+ GP GG LA+
Sbjct: 324 PETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLAT 383
Query: 291 V-LTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQ 335
L+ E + P + ++R P P E LPQ++ +++ SPQ
Sbjct: 384 TPLSQEPVNPPSEASPTRDRSPPKSP--EKLPQSSSS-ESSPPSPQ 426
Score = 29.6 bits (65), Expect = 5.1
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 192 ASLLGSSGPPGSSSSSSSRSQSAAV----------TPSSTTSSTRA---------TPAPS 232
+S SS SS SSSS S+ +++ PS T + A TPA
Sbjct: 2544 SSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKR 2603
Query: 233 APAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPA 281
++S++S S + SS + +S+++S + S S ++ + PA
Sbjct: 2604 KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA 2652
Score = 29.3 bits (64), Expect = 6.7
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAST 254
L S P S S SS + + TP + S ++P P A S S + SS S
Sbjct: 881 LKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSR 940
Query: 255 AASPTQP 261
S T P
Sbjct: 941 VTSRTTP 947
Score = 28.9 bits (63), Expect = 8.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 185 ALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATP---APSAPAAASATS 241
+L+G S PP S S SS+ ++ + TP + S+ + P P+ S +S
Sbjct: 778 SLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSS 837
Query: 242 PSPAPSSGNG 251
SP P +G
Sbjct: 838 SSPHPKVKSG 847
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 45.8 bits (107), Expect = 7e-05
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 195 LGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNG-AS 253
L SS P S+ S+R + V P+S TS+ R PA P +A S P S + A
Sbjct: 487 LSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAG 546
Query: 254 TAASPTQPIQLSDLQ-------SILATMNVPAGPAGGQQVDLASVLTP 294
+SP +P+ L + S L T P P QQ A VL P
Sbjct: 547 PKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAP 594
Score = 35.8 bits (81), Expect = 0.072
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 130 NPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL----GGLGA 185
+P PG +G G G L GE G+ G+ + GP G G GG+G
Sbjct: 983 DPGRPGPVGEQGFMG--FIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGT 1040
Query: 186 LTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAP 234
PG GS GPPG + R P+ S R P P
Sbjct: 1041 PGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGS-RGLKGPPGP 1088
Score = 35.4 bits (80), Expect = 0.093
Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGL-GGLGAL--- 186
P +PG G G G + GE G L GN + L GP G+ GL G LG L
Sbjct: 777 PGVPGKRGKMGMPG--FPGVFGERGPPGLDGNPGE---LGLPGPPGVPGLIGDLGVLGPI 831
Query: 187 --TGP-GLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSP 242
GP G+ L+GS G PG + + P P A P
Sbjct: 832 GYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGP 890
Score = 33.9 bits (76), Expect = 0.27
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGG----------L 180
P +PG G G+ G L GE G Q G + M GP G G
Sbjct: 1113 PGIPGPSGPPGTKG-----LPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMK 1167
Query: 181 GGLGALTGPGLASLLGSSGPPGSSSSS 207
G LG L PG L+G G PG S
Sbjct: 1168 GDLGPLGTPGEQGLIGQRGEPGLEGDS 1194
Score = 33.9 bits (76), Expect = 0.27
Identities = 37/147 (25%), Positives = 45/147 (30%), Gaps = 23/147 (15%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLAS 193
PGA+G G L GE G++ LG + LIG G GL G GP
Sbjct: 1152 PGAVGEPG--------LPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPD--G 1201
Query: 194 LLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAS 253
L G G PG + Q + P P + P +G
Sbjct: 1202 LKGDRGDPGPDGEHGEKGQEGLM----------GEDGPPGPPGVTGVR---GPEGKSGKQ 1248
Query: 254 TAASPTQPIQLSDLQSILATMNVPAGP 280
T Q L M VP P
Sbjct: 1249 GEKGRTGAKGAKGYQGQLGEMGVPGDP 1275
Score = 33.9 bits (76), Expect = 0.27
Identities = 49/193 (25%), Positives = 62/193 (32%), Gaps = 43/193 (22%)
Query: 131 PPMPGALGASGSSGHE--LSALGGEG--GLQSLLGN---MSHSQLMQLIGPAGLGG---- 179
P G+ GA G G + A G G GLQ L G + L + GP GL G
Sbjct: 1393 PGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQ 1452
Query: 180 ---------------LGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSS 224
+G G PG+A L G+ GPPG S Q T
Sbjct: 1453 AGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGR 1512
Query: 225 T-----------RATPAPSA----PAAASATSPSPAPSSGNGASTAASPTQPIQLSDLQS 269
T + P S P A P P G P P L +
Sbjct: 1513 TGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPK-GPPGDIGFKGIQGPRGPPGLMGKEG 1571
Query: 270 ILATMNVPAGPAG 282
I+ + + GP+G
Sbjct: 1572 IVGPLGI-LGPSG 1583
Score = 33.1 bits (74), Expect = 0.46
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 126 EYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGA 185
++L++ P P SSG+ + L G L+G L GP GL GL G+
Sbjct: 596 QFLSSSPRPT------SSGYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPG 649
Query: 186 LTG----PGLASLLGSSGPPGS 203
G PG G GPPG+
Sbjct: 650 ARGPRGPPGPYGNPGLPGPPGA 671
Score = 33.1 bits (74), Expect = 0.46
Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 133 MPGALGASGSSGHE-LSALGGEGGLQSLLGNMSHSQLMQLIG---PAGLGGLGGLGALTG 188
M G LG G+ G + L GE GL+ G M L G P G G G L G
Sbjct: 1166 MKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMG 1225
Query: 189 ----PGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSP 244
PG + G GP G S + ++ A P P +P P
Sbjct: 1226 EDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPG--TPGP 1283
Query: 245 APSSGNGASTAA 256
S G+ T A
Sbjct: 1284 KGSRGSLGPTGA 1295
Score = 31.2 bits (69), Expect = 1.8
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 200 PPGSSSSSS-----SRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAST 254
PP +SSS +R+++ + +S +S R + P A ++SP+P P S
Sbjct: 444 PPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTPGSTRSTRP 503
Query: 255 AASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLAS 290
A+ P + + P G + + S
Sbjct: 504 PATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGS 539
Score = 31.2 bits (69), Expect = 1.8
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 130 NPPMPGALGASGSSGHELSALG-------GEGGLQSLLGNMSHSQLMQLIGPAGLGGLGG 182
NP +PG GA G G + G G+ GL L GN GP G G G
Sbjct: 662 NPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNP---------GPPGRKGHKG 712
Query: 183 LGALTGPGLASLLGSSGPPGSSSSSSSR 210
PG A G G PG S ++
Sbjct: 713 Y-----PGPAGHPGEQGQPGPEGSPGAK 735
Score = 30.8 bits (68), Expect = 2.3
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 27/123 (21%)
Query: 117 DEEHCRKVNEYL---NNPPMP----GALGASGSSGH--ELSALGGEG--GLQSLLGNMS- 164
D EH K E L + PP P G G G SG E G +G G Q LG M
Sbjct: 1212 DGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGV 1271
Query: 165 --HSQLMQLIGPAG-------LGGLGGLGALTGPGLAS------LLGSSGPPGSSSSSSS 209
GP G G G +GA PGLA ++G GPPG
Sbjct: 1272 PGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGE 1331
Query: 210 RSQ 212
+ +
Sbjct: 1332 QGE 1334
Score = 30.0 bits (66), Expect = 3.9
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 26/124 (20%)
Query: 140 SGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLLGSSG 199
S ++ H+ A+GG L +S S + + PA +GG S+
Sbjct: 304 SPTNPHQHMAVGGPAQTPLLPAKLSASNALDPMLPASVGG-----------------STR 346
Query: 200 PPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPSSGNGAST---AA 256
P +++ S+ +A P S + PSAP+ + SP P+ S+ +A
Sbjct: 347 TPRPAAAQPSQKITATKIPKSLPTK------PSAPSTSIVPIKSPHPTQKTAPSSFTKSA 400
Query: 257 SPTQ 260
PTQ
Sbjct: 401 LPTQ 404
Score = 30.0 bits (66), Expect = 3.9
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 131 PPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGG-LGGLGALTGP 189
P M GA G G G + A GE G + L G G G+ G G LG+ P
Sbjct: 1056 PGMRGAKGRRGPRGPDGPA--GEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFP 1113
Query: 190 GLASLLGSSGPPGS 203
G+ G SGPPG+
Sbjct: 1114 GIP---GPSGPPGT 1124
Score = 28.9 bits (63), Expect = 8.7
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 134 PGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAG----LGGLGGLGALTGP 189
PG G G G + + G+ G Q G+ G G +G G +G P
Sbjct: 849 PGLKGDKGEQG--VPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPP 906
Query: 190 GLASLLGSSGPPGSSSSSSSRSQSAA 215
G G GPPG + + + A
Sbjct: 907 GPEGFPGDIGPPGDNGPEGMKGKPGA 932
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,679,582
Number of Sequences: 37866
Number of extensions: 957826
Number of successful extensions: 22924
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 1144
Number of HSP's that attempted gapping in prelim test: 10142
Number of HSP's gapped (non-prelim): 9327
length of query: 407
length of database: 18,247,518
effective HSP length: 105
effective length of query: 302
effective length of database: 14,271,588
effective search space: 4310019576
effective search space used: 4310019576
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.