Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28316806
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28316806 hypothetical protein MGC16664 [Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28316806 hypothetical protein MGC16664 [Homo sapiens] 355 1e-98
gi|89030143 PREDICTED: hypothetical protein [Homo sapiens] 111 3e-25
gi|122937468 hypothetical LOC642968 [Homo sapiens] 111 3e-25
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 32 0.25
gi|55750053 atrophin-1 [Homo sapiens] 32 0.33
gi|55750041 atrophin-1 [Homo sapiens] 32 0.33
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 32 0.33
gi|38201677 teashirt family zinc finger 1 [Homo sapiens] 31 0.43
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens] 31 0.56
gi|108773804 Fraser syndrome 1 [Homo sapiens] 31 0.56
gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens] 30 0.74
gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens] 30 0.74
gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] 30 0.96
gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] 30 0.96
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 30 0.96
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 30 0.96
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 30 0.96
gi|46559747 hypothetical protein LOC399947 [Homo sapiens] 30 1.3
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 29 2.1
gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo ... 29 2.1
gi|31377777 NK2 homeobox 8 [Homo sapiens] 29 2.1
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 29 2.1
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 28 2.8
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 2.8
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 2.8
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 28 2.8
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 2.8
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 28 2.8
gi|24308065 netrin 5 [Homo sapiens] 28 2.8
gi|222831660 family with sequence similarity 171, member A2 [Hom... 28 3.7
>gi|28316806 hypothetical protein MGC16664 [Homo sapiens]
Length = 167
Score = 355 bits (911), Expect = 1e-98
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP 60
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP
Sbjct: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP 60
Query: 61 TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGE 120
TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGE
Sbjct: 61 TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGE 120
Query: 121 RLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV 167
RLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV
Sbjct: 121 RLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV 167
>gi|89030143 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 111 bits (278), Expect = 3e-25
Identities = 72/170 (42%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP 60
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKK EE+E E D H P
Sbjct: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKD----ESEEDEEEPDFAVHSHLP 56
Query: 61 TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSP-FYIRTADMVPNG--G 117
++ + L +L P S SQ A + C +CS P F+++
Sbjct: 57 PLHSNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLN 116
Query: 118 GGERLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV 167
GGER+ + ++ P Q+ + REAF R+ISTDV
Sbjct: 117 GGERVLYKSVSQEDVELPRGAFGGLQALNPNRLSAMREAFARSRSISTDV 166
>gi|122937468 hypothetical LOC642968 [Homo sapiens]
Length = 166
Score = 111 bits (277), Expect = 3e-25
Identities = 72/170 (42%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP 60
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKK EE+E E D H P
Sbjct: 1 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKD----ESEEDEEEPDFAVHSHLP 56
Query: 61 TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSP-FYIRTADMVPNG--G 117
++ + L +L P S SQ A + C +CS P F+++
Sbjct: 57 PLHSNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLN 116
Query: 118 GGERLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV 167
GGER+ + ++ P Q+ + REAF R+ISTDV
Sbjct: 117 GGERVLYKSVSQEDVELPPGGFGGLQALNPNRLSAMREAFARSRSISTDV 166
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 32.0 bits (71), Expect = 0.25
Identities = 37/134 (27%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 33 YCCKKSGTEVADEEEEREHD---------LPTHPRGPTCNACSSQALDGRGSLAPLTSE- 82
+CC + GT+ A E + PT PRG C S + GS T+
Sbjct: 824 HCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARG 883
Query: 83 PCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGERLSFAPTYYKEGGPPSLKLAAP 142
P P T SP + R + G G LS T GGP + A+
Sbjct: 884 PGGSPQEGTRQPGPTPSPGPNSGASRRSS-ASQGAGSRGLSEEKTLRSGGGPQGQEEASG 942
Query: 143 QSYPVTWPGSGREA 156
S P + P S EA
Sbjct: 943 VS-PSSLPRSSPEA 955
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.6 bits (70), Expect = 0.33
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 75 SLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGERLSFAPTYYKEGGP 134
+L+ + + S P G T SP P Y + A P+ G + + P YK G P
Sbjct: 613 TLSTVIATVASSPAGYK-----TASPPGPPPYGKRA---PSPGAYKTAT--PPGYKPGSP 662
Query: 135 PSLKLAAPQSYPVTWPGSGREAF 157
PS + P Y T P +G F
Sbjct: 663 PSFRTGTPPGYRGTSPPAGPGTF 685
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.6 bits (70), Expect = 0.33
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 75 SLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGERLSFAPTYYKEGGP 134
+L+ + + S P G T SP P Y + A P+ G + + P YK G P
Sbjct: 613 TLSTVIATVASSPAGYK-----TASPPGPPPYGKRA---PSPGAYKTAT--PPGYKPGSP 662
Query: 135 PSLKLAAPQSYPVTWPGSGREAF 157
PS + P Y T P +G F
Sbjct: 663 PSFRTGTPPGYRGTSPPAGPGTF 685
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 31.6 bits (70), Expect = 0.33
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 57 PRGPTCNACS-SQALDGRG----SLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTAD 111
P GP N + +QA DG G + A + P P G P + +
Sbjct: 2271 PDGPAPNTVAQAQAADGAGPEDDTEASRAAAPAEGPPGGIQPEAAEPKPTAEAPKAPRVE 2330
Query: 112 MVPNGGGGERLSFAPTYYKEGGPPSLKLAAPQSYPVT 148
+P R K+G PPS K AP PVT
Sbjct: 2331 EIPQRMTRNRAQMLANQSKQGPPPSEKECAPTPAPVT 2367
>gi|38201677 teashirt family zinc finger 1 [Homo sapiens]
Length = 1032
Score = 31.2 bits (69), Expect = 0.43
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 36 KKSGTEVA-DEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASH 94
KKSG+ + ++ ++E PT P PTC ++ P TS P S C + SH
Sbjct: 92 KKSGSTTSTNDASQKESSAPT-PTPPTCPVSTT---------GPTTSTP-STSCSSSTSH 140
Query: 95 CTTCSPYSSPFY 106
+T S SS Y
Sbjct: 141 SSTTSTSSSSGY 152
>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
Length = 3628
Score = 30.8 bits (68), Expect = 0.56
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 29 RLQYYCCKKSGTEVA-DEEEEREHDLPTHPRGPTCNACSSQALDGRGS--LAPLTSEPCS 85
R +Y ++ +A D +E ++ + P+C S + LD +G L S
Sbjct: 3099 RSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKGPEVLQDSLDRCYS 3158
Query: 86 QPCGVAASHCTTCSPYSSPFYI 107
P G C +C PY S FYI
Sbjct: 3159 TPSG-CLELCDSCQPYRSAFYI 3179
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTS-EPCSQPCGVAASH 94
KK + +E R + P C S + LD +G S + C
Sbjct: 3032 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPKVLQDSLDRCYSTPSGCLEL 3091
Query: 95 CTTCSPYSSPFYI 107
C +C PY S FY+
Sbjct: 3092 CDSCQPYRSAFYV 3104
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGS--LAPLTSEPCSQPCGVAAS 93
KK + +E R + P C S + LD +G L S P G
Sbjct: 3351 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSG-CLE 3409
Query: 94 HCTTCSPYSSPFYI 107
C +C PY S FY+
Sbjct: 3410 LCDSCQPYRSAFYV 3423
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 834 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 890
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 891 LELTDSCQPYRSAFYV 906
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 1078 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 1134
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 1135 LELTDSCQPYRSAFYV 1150
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 1322 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 1378
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 1379 LELTDSCQPYRSAFYV 1394
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 1568 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 1624
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 1625 LELTDSCQPYRSAFYV 1640
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 1812 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 1868
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 1869 LELTDSCQPYRSAFYV 1884
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 2056 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 2112
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 2113 LELTDSCQPYRSAFYV 2128
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 2300 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 2356
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 2357 LELTDSCQPYRSAFYV 2372
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 2544 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 2600
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 2601 LELTDSCQPYRSAFYV 2616
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 36 KKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHC 95
KK + +E R + P C S + LD +G P + C S C
Sbjct: 2788 KKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKG---PEVLQDSLDRCYSTPSGC 2844
Query: 96 T----TCSPYSSPFYI 107
+C PY S FY+
Sbjct: 2845 LELTDSCQPYRSAFYV 2860
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 54 PTHPRGPTCNA--------CSSQALDGRGSLAPLTSEPCSQPC----GVAASHCTTCSPY 101
P+ PR TC C S+ G + A + C C G SHCT CSP
Sbjct: 570 PSSPRCLTCTEKTVLHDGKCMSECPGGYYADATGRCKVCHNSCASCSGPTPSHCTACSP- 628
Query: 102 SSPFYIRTADMVPNGGGG 119
P +R +P G G
Sbjct: 629 --PKALRQGHCLPRCGEG 644
>gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens]
Length = 763
Score = 30.4 bits (67), Expect = 0.74
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 26 CYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCS 85
C+C C+ SG D++ + D H R TC + + + R S PL P S
Sbjct: 267 CHCEKT---CQVSGLLYRDQDSWVDGD---HCRNCTCKSGAVECR--RMSCPPLNCSPDS 318
Query: 86 QPCGVAASHCTTCSP 100
P +A C C P
Sbjct: 319 LPVHIAGQCCKVCRP 333
>gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens]
Length = 810
Score = 30.4 bits (67), Expect = 0.74
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 26 CYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGPTCNACSSQALDGRGSLAPLTSEPCS 85
C+C C+ SG D++ + D H R TC + + + R S PL P S
Sbjct: 267 CHCEKT---CQVSGLLYRDQDSWVDGD---HCRNCTCKSGAVECR--RMSCPPLNCSPDS 318
Query: 86 QPCGVAASHCTTCSP 100
P +A C C P
Sbjct: 319 LPVHIAGQCCKVCRP 333
>gi|239756792 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 30.0 bits (66), Expect = 0.96
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 60 PTC--NACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTC 98
PTC ++C Q G P+ C QPC + TTC
Sbjct: 88 PTCCGSSCCGQTSCGSSCCQPICGSSCCQPCCHPTCYQTTC 128
>gi|239751312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 30.0 bits (66), Expect = 0.96
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 60 PTC--NACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTC 98
PTC ++C Q G P+ C QPC + TTC
Sbjct: 88 PTCCGSSCCGQTSCGSSCCQPICGSSCCQPCCHPTCYQTTC 128
>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
Length = 1072
Score = 30.0 bits (66), Expect = 0.96
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 8 ITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEE-----REHDLPTHPRGPTC 62
+ GI+ ++++ I+ + YCR + K+G E ++ E ++HD P+
Sbjct: 884 VVAGIMTVILIILIVVMARYCRSK----NKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKK 939
Query: 63 NACSSQAL 70
N S Q L
Sbjct: 940 NKKSKQPL 947
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 30.0 bits (66), Expect = 0.96
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 8 ITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEE-----REHDLPTHPRGPTC 62
+ GI+ ++++ I+ + YCR + K+G E ++ E ++HD P+
Sbjct: 837 VVAGIMTVILIILIVVMARYCRSK----NKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKK 892
Query: 63 NACSSQAL 70
N S Q L
Sbjct: 893 NKKSKQPL 900
>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
Length = 1069
Score = 30.0 bits (66), Expect = 0.96
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 8 ITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEE-----REHDLPTHPRGPTC 62
+ GI+ ++++ I+ + YCR + K+G E ++ E ++HD P+
Sbjct: 884 VVAGIMTVILIILIVVMARYCRSK----NKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKK 939
Query: 63 NACSSQAL 70
N S Q L
Sbjct: 940 NKKSKQPL 947
>gi|46559747 hypothetical protein LOC399947 [Homo sapiens]
Length = 197
Score = 29.6 bits (65), Expect = 1.3
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 33/117 (28%)
Query: 12 ILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREH---------------DLPTH 56
+L TVI I+ L + KK + A EE ER+H PTH
Sbjct: 66 VLVTVIFCLIVLSLSTFHIHKRRMKKRKMQRAQEEYERDHCSGSRGGGGLPRPGRQAPTH 125
Query: 57 -----------------PRGPTCNACSSQALDGRGSLAPLTSEPCSQPCGV-AASHC 95
P + + SS L +G AP P S P G AAS C
Sbjct: 126 AKETRLERQPRDSPFCAPSNASSLSSSSPGLPCQGPCAPPPPPPASSPQGAHAASSC 182
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 6 VVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDL 53
+V+T G++ TV+++ I+AV+C R KK T A + + + DL
Sbjct: 1102 IVVTVGVI-TVLVVVIVAVICTRRSSAQQRKKRATHSAGKRKGSQKDL 1148
>gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo
sapiens]
Length = 272
Score = 28.9 bits (63), Expect = 2.1
Identities = 21/77 (27%), Positives = 30/77 (38%)
Query: 66 SSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSPFYIRTADMVPNGGGGERLSFA 125
S Q+L G A L S+P P V HC + + ++ A GG R FA
Sbjct: 5 SGQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFA 64
Query: 126 PTYYKEGGPPSLKLAAP 142
P + P ++ P
Sbjct: 65 PAAARPRSAPRRRILGP 81
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 104 PFYIRTADMVPNGGGGERLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAF 157
P +R GGGGE + A K G PP+ P YP PGS F
Sbjct: 172 PVLVRDGQPCGGGGGGE-VGTAAAQEKCGAPPAAACPLP-GYPAFGPGSALGLF 223
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 28.9 bits (63), Expect = 2.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 53 LPTHPRGPTCNA-CSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYS 102
L HP P + C+S + + + LT E CSQ C A+S C P+S
Sbjct: 2641 LQWHPEPPLADCGCTSNGIYYQLGSSFLT-EDCSQRCTCASSRILLCEPFS 2690
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 28.5 bits (62), Expect = 2.8
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 59 GPTCNACSSQALDGRGSLAPLTSE-----PCSQPCGVAASHCTTCSPYSSPFYIRTADMV 113
GP + A G G+L P + P PC AA C P ++ TA+
Sbjct: 8 GPGGCGAGAGAGAGPGALPPQPAALPPAPPQGSPCAAAAGGSGACGPATAVAAAGTAE-G 66
Query: 114 PNGGGGERLS 123
P GGG R++
Sbjct: 67 PGGGGSARIA 76
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 28 CRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP--TCNACSSQALDGRGSL 76
C LQ YCC + + R H L H P C C Q L GR +L
Sbjct: 1081 CSLQVYCCPYCSFLSPESSQVRAHTLSQHAVQPKYRCPLCQEQ-LVGRPAL 1130
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 28 CRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP--TCNACSSQALDGRGSL 76
C LQ YCC + + R H L H P C C Q L GR +L
Sbjct: 997 CSLQVYCCPYCSFLSPESSQVRAHTLSQHAVQPKYRCPLCQEQ-LVGRPAL 1046
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 28.5 bits (62), Expect = 2.8
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 39 GTEVADEEEEREHDLPTHPRGPTCNAC-----SSQALDGRGSLAPLTSEPCSQPCGVAAS 93
G +E+ R D+PT P GP+ C SQA R A + +P + +
Sbjct: 236 GGRPENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEET 295
Query: 94 HCTTCSPYSSPFYIRTADMVP------NGGGGERLSFAPTYYKEGGPPSLKLAA 141
+ + A +P +GGG RL+ P PP ++ A
Sbjct: 296 RPPGAARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGA 349
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 28 CRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP--TCNACSSQALDGRGSL 76
C LQ YCC + + R H L H P C C Q L GR +L
Sbjct: 997 CSLQVYCCPYCSFLSPESSQVRAHTLSQHAVQPKYRCPLCQEQ-LVGRPAL 1046
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 28.5 bits (62), Expect = 2.8
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 39 GTEVADEEEEREHDLPTHPRGPTCNAC-----SSQALDGRGSLAPLTSEPCSQPCGVAAS 93
G +E+ R D+PT P GP+ C SQA R A + +P + +
Sbjct: 236 GGRPENEDSPRFPDVPTRPAGPSPFYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEET 295
Query: 94 HCTTCSPYSSPFYIRTADMVP------NGGGGERLSFAPTYYKEGGPPSLKLAA 141
+ + A +P +GGG RL+ P PP ++ A
Sbjct: 296 RPPGAARPGARRLRSLASRLPRGGRWLDGGGSGRLTREPASLPNPIPPGSRVGA 349
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 62 CNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSP 100
C AC + G TS C+ GV C C P
Sbjct: 272 CRACQCHPIGATGGTCNQTSGQCTCKLGVTGLTCNRCGP 310
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 28.1 bits (61), Expect = 3.7
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 2 TAGTVVITGGI-----LATVILLCIIAVLCY------CRLQYYCCKK 37
TAG V IT GI T+ LL I+A L C L YYC ++
Sbjct: 297 TAGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRR 343
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,138,864
Number of Sequences: 37866
Number of extensions: 434481
Number of successful extensions: 1620
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1550
Number of HSP's gapped (non-prelim): 113
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.