Guide to the Human Genome
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Name: FAM163A Sequence: fasta or formatted (167aa) NCBI GI: 28316806
Description:

hypothetical protein MGC16664

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         15           2
 C cysteine            6.6         11           2
 D aspartate           3.0          5           1
 E glutamate           6.0         10           4
 F phenylalanine       1.8          3           1
 G glycine             9.6         16           4
 H histidine           1.8          3           1
 I isoleucine          4.2          7           2
 K lysine              2.4          4           2
 L leucine             7.2         12           2
 M methionine          1.2          2           1
 N asparagine          1.8          3           1
 P proline             9.6         16           2
 Q glutamine           2.4          4           1
 R arginine            4.8          8           1
 S serine              9.0         15           2
 T threonine           9.0         15           2
 V valine              5.4          9           2
 W tryptophan          0.6          1           1
 Y tyrosine            4.8          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein MGC16664 
LOC643750             0.261   PREDICTED: hypothetical protein 
FAM163B               0.261   hypothetical LOC642968 
RP1L1                 0.021   retinitis pigmentosa 1-like 1 
ATN1                  0.021   atrophin-1 
ATN1                  0.021   atrophin-1 
ANKRD11               0.021   ankyrin repeat domain 11 
TSHZ1                 0.018   teashirt family zinc finger 1 
NBPF10                0.018   hypothetical protein LOC100132406 
FRAS1                 0.018   Fraser syndrome 1 
NELL1                 0.015   nel-like 1 isoform 2 precursor 
NELL1                 0.015   nel-like 1 isoform 1 precursor 
LOC728318             0.015   PREDICTED: hypothetical protein 
LOC728318             0.015   PREDICTED: hypothetical protein 
PCDH7                 0.015   protocadherin 7 isoform b precursor 
PCDH7                 0.015   protocadherin 7 isoform c precursor 
PCDH7                 0.015   protocadherin 7 isoform a precursor 
C11orf87              0.015   hypothetical protein LOC399947 
DCC                   0.012   deleted in colorectal carcinoma 
LOC100288104          0.012   PREDICTED: hypothetical protein XP_002342450 
NKX2-8                0.012   NK2 homeobox 8 
ZAN                   0.012   zonadhesin isoform 3 
KAT2B                 0.009   K(lysine) acetyltransferase 2B 
ZFHX2                 0.009   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.009   PREDICTED: zinc finger homeobox 2 
LOC100290359          0.009   PREDICTED: hypothetical protein XP_002346414 
ZFHX2                 0.009   PREDICTED: zinc finger homeobox 2 
LOC100287202          0.009   PREDICTED: hypothetical protein XP_002342114 
NTN5                  0.009   netrin 5 
FAM171A2              0.009   family with sequence similarity 171, member A2 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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