Guide to the Human Genome
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Name: FAM163B Sequence: fasta or formatted (166aa) NCBI GI: 122937468
Description:

hypothetical LOC642968

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         12           1
 C cysteine            4.8          8           2
 D aspartate           3.6          6           1
 E glutamate           9.6         16           4
 F phenylalanine       3.6          6           2
 G glycine             6.0         10           2
 H histidine           2.4          4           1
 I isoleucine          3.6          6           2
 K lysine              2.4          4           2
 L leucine            10.8         18           2
 M methionine          1.2          2           1
 N asparagine          3.6          6           1
 P proline             7.8         13           2
 Q glutamine           3.6          6           1
 R arginine            5.4          9           1
 S serine              9.0         15           1
 T threonine           5.4          9           1
 V valine              6.6         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical LOC642968 
LOC643750             0.981   PREDICTED: hypothetical protein 
FAM163A               0.271   hypothetical protein MGC16664 
CXADR                 0.022   coxsackie virus and adenovirus receptor precursor [Ho...
CXCL16                0.022   chemokine (C-X-C motif) ligand 16 
CXCL16                0.022   chemokine (C-X-C motif) ligand 16 
BRCA1                 0.016   breast cancer 1, early onset isoform 2 
BRCA1                 0.016   breast cancer 1, early onset isoform 3 
BRCA1                 0.016   breast cancer 1, early onset isoform 1 
MEA1                  0.016   male-enhanced antigen 
SLC4A7                0.016   solute carrier family 4, sodium bicarbonate cotrans...
TMEM98                0.016   transmembrane protein 98 
TMEM98                0.016   transmembrane protein 98 
RAD23A                0.013   UV excision repair protein RAD23 homolog A 
PTPRD                 0.013   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.013   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.013   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.013   protein tyrosine phosphatase, receptor type, D isofo...
LRRC37A3              0.013   leucine rich repeat containing 37, member A3 
LOC100294335          0.009   PREDICTED: similar to c114 SLIT-like testicular pro...
LRRC37A2              0.009   c114 SLIT-like testicular protein 
LRRC37A               0.009   leucine rich repeat containing 37A 
LRRIQ1                0.009   leucine-rich repeats and IQ motif containing 1 isof...
IGSF11                0.009   immunoglobulin superfamily, member 11 isoform b [Hom...
IGSF11                0.009   immunoglobulin superfamily, member 11 isoform a [Hom...
FAM171A2              0.009   family with sequence similarity 171, member A2 [Hom...
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
C12orf28              0.009   PREDICTED: hypothetical protein LOC196446 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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