Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GCNT4 Sequence: fasta or formatted (453aa) NCBI GI: 7706127
Description:

core 2 beta-1,6-N-acetylglucosaminyltransferase 3

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         23           2
 C cysteine            2.2         10           1
 D aspartate           5.5         25           3
 E glutamate           6.2         28           2
 F phenylalanine       5.5         25           2
 G glycine             2.6         12           1
 H histidine           2.9         13           2
 I isoleucine          7.5         34           2
 K lysine              7.7         35           2
 L leucine            10.8         49           2
 M methionine          1.3          6           1
 N asparagine          4.6         21           2
 P proline             4.0         18           2
 Q glutamine           3.8         17           2
 R arginine            5.1         23           3
 S serine              7.7         35           2
 T threonine           4.0         18           3
 V valine              6.4         29           2
 W tryptophan          1.8          8           1
 Y tyrosine            5.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho... 
GCNT3                 0.340   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
GCNT1                 0.335   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.335   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.335   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.335   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.335   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6...
GCNT2                 0.288   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT2                 0.288   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT2                 0.277   glucosaminyl (N-acetyl) transferase 2, I-branching en...
GCNT7                 0.246   glucosaminyl (N-acetyl) transferase family member 7...
GCNT6                 0.176   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.176   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.176   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
XYLT2                 0.061   xylosyltransferase II 
XYLT1                 0.053   xylosyltransferase I 
CLTC                  0.011   clathrin heavy chain 1 
GBP5                  0.008   guanylate-binding protein 5 
GBP5                  0.008   guanylate-binding protein 5 
C1orf129              0.007   hypothetical protein LOC80133 
KLHL26                0.006   kelch-like 26 
EPS8                  0.006   epidermal growth factor receptor pathway substrate 8...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press