Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GCNT2 Sequence: fasta or formatted (400aa) NCBI GI: 4503963
Description:

glucosaminyl (N-acetyl) transferase 2, I-branching enzyme isoform B

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [402aa] glucosaminyl (N-acetyl) transferase 2, I-branching enzyme isoform A
alt prot [402aa] glucosaminyl (N-acetyl) transferase 2, I-branching enzyme isoform C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         22           1
 C cysteine            2.2          9           1
 D aspartate           4.0         16           1
 E glutamate           5.0         20           2
 F phenylalanine       6.5         26           1
 G glycine             5.2         21           2
 H histidine           4.2         17           3
 I isoleucine          6.5         26           2
 K lysine              5.5         22           1
 L leucine             9.5         38           2
 M methionine          2.0          8           1
 N asparagine          5.0         20           1
 P proline             6.0         24           4
 Q glutamine           3.0         12           1
 R arginine            4.5         18           1
 S serine              7.2         29           2
 T threonine           5.5         22           2
 V valine              6.2         25           2
 W tryptophan          2.0          8           1
 Y tyrosine            4.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glucosaminyl (N-acetyl) transferase 2, I-branching en... 
GCNT2                 0.719   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT2                 0.716   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT7                 0.441   glucosaminyl (N-acetyl) transferase family member 7...
GCNT3                 0.337   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
GCNT6                 0.329   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.329   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.329   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT1                 0.321   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.321   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.321   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.321   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.321   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6...
GCNT4                 0.307   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho...
XYLT2                 0.074   xylosyltransferase II 
XYLT1                 0.059   xylosyltransferase I 
LOC100294349          0.006   PREDICTED: similar to Parkinson disease 7 domain co...
SEC23A                0.006   SEC23-related protein A 
PDDC1                 0.006   Parkinson disease 7 domain containing 1 
SEC23B                0.006   Sec23 homolog B 
SEC23B                0.006   Sec23 homolog B 
SEC23B                0.006   Sec23 homolog B 
LOC100133915          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press