Guide to the Human Genome
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Name: GCNT2 Sequence: fasta or formatted (402aa) NCBI GI: 85790495
Description:

glucosaminyl (N-acetyl) transferase 2, I-branching enzyme isoform C

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [402aa] glucosaminyl (N-acetyl) transferase 2, I-branching enzyme isoform A
alt prot [400aa] glucosaminyl (N-acetyl) transferase 2, I-branching enzyme isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         22           2
 C cysteine            2.5         10           1
 D aspartate           4.5         18           1
 E glutamate           5.5         22           3
 F phenylalanine       6.2         25           2
 G glycine             4.2         17           2
 H histidine           3.7         15           1
 I isoleucine          4.5         18           1
 K lysine              6.0         24           1
 L leucine             9.2         37           2
 M methionine          1.5          6           1
 N asparagine          5.2         21           1
 P proline             5.7         23           2
 Q glutamine           3.5         14           1
 R arginine            5.0         20           1
 S serine              7.2         29           3
 T threonine           5.7         23           1
 V valine              7.2         29           2
 W tryptophan          2.2          9           1
 Y tyrosine            5.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glucosaminyl (N-acetyl) transferase 2, I-branching e... 
GCNT2                 0.725   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT2                 0.709   glucosaminyl (N-acetyl) transferase 2, I-branching en...
GCNT7                 0.454   glucosaminyl (N-acetyl) transferase family member 7...
GCNT3                 0.339   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
GCNT6                 0.333   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.333   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.333   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT4                 0.316   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho...
GCNT1                 0.309   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.309   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.309   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.309   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.309   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6...
XYLT2                 0.072   xylosyltransferase II 
XYLT1                 0.066   xylosyltransferase I 
SYCP1                 0.009   synaptonemal complex protein 1 
TMCO3                 0.007   transmembrane and coiled-coil domains 3 
KIAA1033              0.005   hypothetical protein LOC23325 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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