Guide to the Human Genome
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Name: GCNT1 Sequence: fasta or formatted (428aa) NCBI GI: 21614523
Description:

beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase

Referenced in:

Protein Glycosylation

Other entries for this name:
alt mRNA [428aa] beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylgluc...
alt mRNA [428aa] beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylgluc...
alt mRNA [428aa] beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylgluc...
alt mRNA [428aa] beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylgluc...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         23           2
 C cysteine            2.1          9           1
 D aspartate           5.1         22           2
 E glutamate           6.5         28           2
 F phenylalanine       4.4         19           1
 G glycine             3.5         15           1
 H histidine           3.0         13           2
 I isoleucine          5.1         22           1
 K lysine              7.5         32           2
 L leucine            10.5         45           2
 M methionine          3.5         15           1
 N asparagine          4.0         17           2
 P proline             4.7         20           2
 Q glutamine           2.8         12           1
 R arginine            5.6         24           3
 S serine              7.0         30           2
 T threonine           4.0         17           1
 V valine              8.4         36           2
 W tryptophan          1.9          8           1
 Y tyrosine            4.9         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6... 
GCNT1                 1.000   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 1.000   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 1.000   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 1.000   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT3                 0.492   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
GCNT4                 0.354   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho...
GCNT2                 0.306   glucosaminyl (N-acetyl) transferase 2, I-branching en...
GCNT2                 0.298   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT2                 0.289   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT7                 0.252   glucosaminyl (N-acetyl) transferase family member 7...
GCNT6                 0.176   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.176   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 0.176   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
XYLT2                 0.059   xylosyltransferase II 
XYLT1                 0.052   xylosyltransferase I 
PAXIP1                0.008   PAX interacting protein 1 
TRIM60                0.006   ring finger protein 129 
ITSN2                 0.006   intersectin 2 isoform 1 
ITSN2                 0.006   intersectin 2 isoform 2 
DNAH5                 0.005   dynein, axonemal, heavy chain 5 
FER1L5                0.005   fer-1-like 5 isoform 2 
FER1L5                0.005   fer-1-like 5 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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