Guide to the Human Genome
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Name: GCNT6 Sequence: fasta or formatted (391aa) NCBI GI: 239748765
Description:

PREDICTED: glucosaminyl (N-acetyl) transferase 6

Referenced in:

Protein Glycosylation

Other entries for this name:
alt mRNA [391aa] PREDICTED: glucosaminyl (N-acetyl) transferase 6
alt mRNA [391aa] PREDICTED: glucosaminyl (N-acetyl) transferase 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         29           2
 C cysteine            3.1         12           1
 D aspartate           3.8         15           2
 E glutamate           4.1         16           2
 F phenylalanine       4.6         18           1
 G glycine             4.6         18           2
 H histidine           3.8         15           1
 I isoleucine          7.7         30           4
 K lysine              5.1         20           3
 L leucine             8.7         34           2
 M methionine          1.5          6           1
 N asparagine          5.1         20           2
 P proline             4.6         18           3
 Q glutamine           4.9         19           3
 R arginine            3.8         15           1
 S serine              7.2         28           2
 T threonine           6.4         25           2
 V valine              6.1         24           1
 W tryptophan          2.3          9           1
 Y tyrosine            5.1         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H... 
GCNT6                 1.000   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT6                 1.000   PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H...
GCNT2                 0.346   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT2                 0.338   glucosaminyl (N-acetyl) transferase 2, I-branching en...
GCNT2                 0.337   glucosaminyl (N-acetyl) transferase 2, I-branching e...
GCNT7                 0.238   glucosaminyl (N-acetyl) transferase family member 7...
GCNT3                 0.213   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
GCNT4                 0.200   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho...
GCNT1                 0.190   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.190   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.190   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.190   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,...
GCNT1                 0.190   beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6...
XYLT2                 0.041   xylosyltransferase II 
XYLT1                 0.038   xylosyltransferase I 
THAP4                 0.009   THAP domain containing 4 
KIAA1632              0.006   hypothetical protein LOC57724 
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prote...
KREMEN2               0.005   kringle-containing transmembrane protein 2 isoform b...
RNPS1                 0.005   RNA-binding protein S1, serine-rich domain 
KREMEN2               0.005   kringle-containing transmembrane protein 2 isoform d...
RNPS1                 0.005   RNA-binding protein S1, serine-rich domain 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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