Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28212280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 260 2e-70
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 62 1e-10
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 62 1e-10
gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens] 61 2e-10
gi|224494572 hypothetical protein LOC401082 [Homo sapiens] 59 7e-10
gi|62243734 signal transducing adaptor family member 2 isoform 1... 57 3e-09
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 56 6e-09
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 54 4e-08
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 54 4e-08
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 54 4e-08
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 52 1e-07
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 52 1e-07
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 51 2e-07
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 51 2e-07
gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi... 49 7e-07
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 49 1e-06
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 48 2e-06
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 47 5e-06
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 47 5e-06
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso... 47 5e-06
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 46 6e-06
gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo sapi... 46 8e-06
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 44 4e-05
gi|119964690 glycogenin 2 isoform b [Homo sapiens] 42 9e-05
gi|61744479 solute carrier family 3, member 2 isoform d [Homo sa... 41 2e-04
gi|65506891 solute carrier family 3, member 2 isoform c [Homo sa... 41 3e-04
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 40 4e-04
gi|226371669 discs large homolog 7 isoform b [Homo sapiens] 40 6e-04
gi|219689113 two pore segment channel 1 isoform 1 [Homo sapiens] 39 7e-04
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 39 0.001
>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
Length = 122
Score = 260 bits (665), Expect = 2e-70
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MGREMKKTGTPRPFRIEDPNQQPTWHDQPEMGSHYFAQAGLELLGSSNPPASASQSAGIT 60
MGREMKKTGTPRPFRIEDPNQQPTWHDQPEMGSHYFAQAGLELLGSSNPPASASQSAGIT
Sbjct: 1 MGREMKKTGTPRPFRIEDPNQQPTWHDQPEMGSHYFAQAGLELLGSSNPPASASQSAGIT 60
Query: 61 GVSHCARPGEHDLNHTVFQVKDSTFLRHLESDRPEFKSCLPPHFTEPSVSLSTSEGCEDA 120
GVSHCARPGEHDLNHTVFQVKDSTFLRHLESDRPEFKSCLPPHFTEPSVSLSTSEGCEDA
Sbjct: 61 GVSHCARPGEHDLNHTVFQVKDSTFLRHLESDRPEFKSCLPPHFTEPSVSLSTSEGCEDA 120
Query: 121 MG 122
MG
Sbjct: 121 MG 122
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 62.0 bits (149), Expect = 1e-10
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 29 PEMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPG 69
PEMG H+ QA LELLGSS+ PASASQSAGITGV+H A+PG
Sbjct: 75 PEMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPG 115
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 62.0 bits (149), Expect = 1e-10
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 29 PEMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPG 69
PEMG H+ QA LELLGSS+ PASASQSAGITGV+H A+PG
Sbjct: 75 PEMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPG 115
>gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]
Length = 176
Score = 61.2 bits (147), Expect = 2e-10
Identities = 47/99 (47%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 31 MGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPGEHDLNHTVFQVKDSTFLRH-- 88
M HY AQA LELL SSNPPASASQS GITG SH ARPG H + +V D H
Sbjct: 1 MEFHYVAQADLELLTSSNPPASASQSTGITGGSHRARPGP---VHFIDKVTDKPSHSHPF 57
Query: 89 -LESD---RPEFKSCLPPHFTE-PSVSLSTSEGCEDAMG 122
L+ + PE S P F E PS S G G
Sbjct: 58 ALKENWNLNPEPSSPPSPLFLEAPSRQASQHHGASPGAG 96
>gi|224494572 hypothetical protein LOC401082 [Homo sapiens]
Length = 95
Score = 59.3 bits (142), Expect = 7e-10
Identities = 28/39 (71%), Positives = 30/39 (76%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARP 68
E GSHY AQAGLELLGSSN P SA Q+AG TG+ HC P
Sbjct: 14 EDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPP 52
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 57.4 bits (137), Expect = 3e-09
Identities = 29/39 (74%), Positives = 31/39 (79%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARP 68
E G H+ AQAGLELL SS+PP SASQSAGITGVSH P
Sbjct: 359 EKGFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWP 397
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 56.2 bits (134), Expect = 6e-09
Identities = 29/37 (78%), Positives = 31/37 (83%)
Query: 32 GSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARP 68
GS Y AQAGLELL SS+ PASASQSAGITGVSH +P
Sbjct: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQP 160
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 53.5 bits (127), Expect = 4e-08
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 31 MGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPGEHDL 73
MG ++ QAGLELL SS+PP SASQ+A ITGVSH A+ H+L
Sbjct: 1 MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNL 43
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 53.5 bits (127), Expect = 4e-08
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 31 MGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPGEHDL 73
MG ++ QAGLELL SS+PP SASQ+A ITGVSH A+ H+L
Sbjct: 1 MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNL 43
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 53.5 bits (127), Expect = 4e-08
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 31 MGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPGEHDL 73
MG ++ QAGLELL SS+PP SASQ+A ITGVSH A+ H+L
Sbjct: 1 MGLYHVGQAGLELLTSSDPPTSASQNAEITGVSHRAQSKAHNL 43
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 52.0 bits (123), Expect = 1e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 38 QAGLELLGSSNPPASASQSAGITGVSHCARP 68
QAGLELL S +PP SASQSAGITGVSH ARP
Sbjct: 363 QAGLELLISGDPPTSASQSAGITGVSHWARP 393
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 52.0 bits (123), Expect = 1e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Query: 38 QAGLELLGSSNPPASASQSAGITGVSHCARP 68
QAGLELL S +PP SASQSAGITGVSH ARP
Sbjct: 363 QAGLELLISGDPPTSASQSAGITGVSHWARP 393
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 38 QAGLELLGSSNPPASASQSAGITGVSHCARP 68
QAGLELL S +PP SASQSAGITGV+H ARP
Sbjct: 363 QAGLELLISGDPPTSASQSAGITGVTHWARP 393
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 38 QAGLELLGSSNPPASASQSAGITGVSHCARP 68
QAGLELL S +PP SASQSAGITGV+H ARP
Sbjct: 363 QAGLELLISGDPPTSASQSAGITGVTHWARP 393
>gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo
sapiens]
Length = 276
Score = 49.3 bits (116), Expect = 7e-07
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 33 SHYFAQAGLELLGSSNPPASASQSAGITGVSHC 65
S + AQ GL++LGS +PPASA QSAGITGVS C
Sbjct: 157 SRHIAQTGLKVLGSRDPPASAFQSAGITGVSRC 189
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 37 AQAGLELLGSSNPPASASQSAGITGVSHC 65
AQAGLELL SS+P A ASQSAGITG+SHC
Sbjct: 702 AQAGLELLVSSSPSALASQSAGITGMSHC 730
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 47.8 bits (112), Expect = 2e-06
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARPGEHDLNHTVFQVKDSTFLRHL 89
EMG H+ QAGLELL SS+ P SASQSAGIT + + + + F + + +
Sbjct: 38 EMGFHHVGQAGLELLISSDLPTSASQSAGITDMKLSMKNNIINTQQS-FVTMPNVIVPDI 96
Query: 90 ESDRPEFKSCLPPHFTEPSVSLSTSEGCED 119
E + ++ F+E S STSE E+
Sbjct: 97 EKEIRRMENGACSSFSEDDDSASTSEESEN 126
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 46.6 bits (109), Expect = 5e-06
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARP 68
E S + Q+ LELL SS+PPASASQSAGI GV H RP
Sbjct: 107 ETESGHVTQSDLELLLSSDPPASASQSAGIRGVRHHPRP 145
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 46.6 bits (109), Expect = 5e-06
Identities = 24/38 (63%), Positives = 26/38 (68%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCAR 67
E GS Y AQAGLE L S +P ASAS +AGITG H R
Sbjct: 42 ETGSRYVAQAGLEPLASGDPSASASHAAGITGSRHRTR 79
>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
isoform b [Homo sapiens]
Length = 307
Score = 46.6 bits (109), Expect = 5e-06
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGIT 60
E G H+ AQAGL+LL SSNPPAS SQSA IT
Sbjct: 93 ETGFHHVAQAGLKLLSSSNPPASTSQSAKIT 123
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 46.2 bits (108), Expect = 6e-06
Identities = 26/38 (68%), Positives = 27/38 (71%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCAR 67
E G H+ QA LELL S ASASQSAGITGVSH AR
Sbjct: 1042 ETGFHHVGQACLELLTSGGLLASASQSAGITGVSHHAR 1079
>gi|211971058 G protein-coupled receptor 107 isoform 1 [Homo
sapiens]
Length = 600
Score = 45.8 bits (107), Expect = 8e-06
Identities = 23/35 (65%), Positives = 26/35 (74%)
Query: 33 SHYFAQAGLELLGSSNPPASASQSAGITGVSHCAR 67
SH+FAQA LELL SS PPAS SQ AGIT + A+
Sbjct: 456 SHHFAQADLELLASSCPPASVSQRAGITAAINLAK 490
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 43.5 bits (101), Expect = 4e-05
Identities = 22/32 (68%), Positives = 24/32 (75%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITG 61
E G H QAGL+LL SS+PPA SQSAGITG
Sbjct: 111 ETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
>gi|119964690 glycogenin 2 isoform b [Homo sapiens]
Length = 501
Score = 42.4 bits (98), Expect = 9e-05
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 34 HYFAQAGLELLGSSNPPASASQSAGIT 60
H+ AQAGLELL SSN P SASQSAG+T
Sbjct: 7 HHGAQAGLELLRSSNSPTSASQSAGMT 33
>gi|61744479 solute carrier family 3, member 2 isoform d [Homo
sapiens]
Length = 599
Score = 41.2 bits (95), Expect = 2e-04
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 27 DQPEMGSHYFAQAGLELLGSSNPPASASQSAGITG 61
D E GS QAGL+LL SS+PPA AS++A +TG
Sbjct: 35 DDSETGSDCVTQAGLQLLASSDPPALASKNAEVTG 69
>gi|65506891 solute carrier family 3, member 2 isoform c [Homo
sapiens]
Length = 630
Score = 40.8 bits (94), Expect = 3e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 2 GREMKKTGTPRPFRIEDPNQQPTWHDQPEMGSHYFAQAGLELLGSSNPPASASQSAGITG 61
G E+ +G P P ++ + E GS QAGL+LL SS+PPA AS++A +TG
Sbjct: 48 GLELLASGDPLPSASQNA-------EMIETGSDCVTQAGLQLLASSDPPALASKNAEVTG 100
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 27 DQPEMGSHYFAQAGLELLGSSNPPASASQSA 57
D E+GSH AQ GLELL S +P SASQ+A
Sbjct: 35 DDSELGSHCVAQTGLELLASGDPLPSASQNA 65
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 40.0 bits (92), Expect = 4e-04
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCAR 67
E A + L LLGSS+ PASAS+ AGITGV H A+
Sbjct: 465 ECSGTILAHSNLRLLGSSDSPASASRVAGITGVCHHAQ 502
>gi|226371669 discs large homolog 7 isoform b [Homo sapiens]
Length = 842
Score = 39.7 bits (91), Expect = 6e-04
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 26 HDQPEMGSHYFAQAGLELLGSSNPPASASQSAGITGVS 63
H +GS Y A+AGLE+LGSS+P SAS+ AG T S
Sbjct: 802 HLLDSVGSCYVARAGLEVLGSSDPTTSASRVAGTTARS 839
>gi|219689113 two pore segment channel 1 isoform 1 [Homo sapiens]
Length = 888
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/30 (70%), Positives = 22/30 (73%)
Query: 31 MGSHYFAQAGLELLGSSNPPASASQSAGIT 60
M S Y AQAGLELLGSS+ P SQSA IT
Sbjct: 1 MESCYIAQAGLELLGSSSSPTLTSQSAEIT 30
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/39 (53%), Positives = 23/39 (58%)
Query: 22 QPTWHDQPEMGSHYFAQAGLELLGSSNPPASASQSAGIT 60
Q D E G + Q GLELL S +PP ASQSAGIT
Sbjct: 301 QKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,809,006
Number of Sequences: 37866
Number of extensions: 256655
Number of successful extensions: 611
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 103
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.