Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132815 Sequence: fasta or formatted (142aa) NCBI GI: 169213573
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {142aa} PREDICTED: hypothetical protein
alt mRNA {142aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         10           1
 C cysteine            4.9          7           1
 D aspartate           4.9          7           1
 E glutamate           2.1          3           1
 F phenylalanine       2.1          3           1
 G glycine             7.0         10           2
 H histidine           7.0         10           1
 I isoleucine          4.9          7           1
 K lysine              2.8          4           1
 L leucine            10.6         15           2
 M methionine          1.4          2           1
 N asparagine          3.5          5           1
 P proline             4.9          7           2
 Q glutamine           5.6          8           1
 R arginine            3.5          5           1
 S serine              8.5         12           2
 T threonine           7.0         10           1
 V valine              7.7         11           2
 W tryptophan          1.4          2           1
 Y tyrosine            2.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132815          1.000   PREDICTED: hypothetical protein 
LOC100132815          1.000   PREDICTED: hypothetical protein 
STAP2                 0.123   signal transducing adaptor family member 2 isoform 1...
C14orf178             0.105   hypothetical protein LOC283579 
LOC100128260          0.098   PREDICTED: hCG_1742852 
LOC100128260          0.098   PREDICTED: hCG_1742852 
LOC100288773          0.094   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.094   PREDICTED: hCG_1742852 
ZNF195                0.094   zinc finger protein 195 isoform 2 
ZNF195                0.094   zinc finger protein 195 isoform 1 
CNGA1                 0.091   cyclic nucleotide gated channel alpha 1 isoform 1 [...
C9orf37               0.087   chromosome 9 open reading frame 37 
C15orf40              0.083   hypothetical protein LOC123207 isoform d 
UTY                   0.076   tetratricopeptide repeat protein isoform 1 
SUGT1                 0.069   suppressor of G2 allele of SKP1 isoform a 
LOC100128682          0.069   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.069   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.069   PREDICTED: hypothetical protein LOC100128682 
SULT1C2               0.065   sulfotransferase family, cytosolic, 1C, member 1 iso...
CHEK2                 0.065   protein kinase CHK2 isoform c 
REL                   0.062   v-rel reticuloendotheliosis viral oncogene homolog [H...
PODXL                 0.062   podocalyxin-like isoform 1 precursor 
SLC3A2                0.058   solute carrier family 3, member 2 isoform d 
SLC3A2                0.058   solute carrier family 3, member 2 isoform c 
LOC100294407          0.054   PREDICTED: similar to hCG2039376 
SLC3A2                0.054   solute carrier family 3, member 2 isoform a 
FLJ25363              0.054   hypothetical protein LOC401082 
SLC3A2                0.054   solute carrier family 3, member 2 isoform b 
FAM18B2               0.051   hypothetical protein LOC201158 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press