Guide to the Human Genome
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Name: ZNF30 Sequence: fasta or formatted (623aa) NCBI GI: 152963633
Description:

zinc finger protein 30 isoform b

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [624aa] zinc finger protein 30 isoform a
alt prot [624aa] zinc finger protein 30 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         23           1
 C cysteine            6.1         38           1
 D aspartate           1.4          9           2
 E glutamate           8.7         54           2
 F phenylalanine       4.3         27           1
 G glycine             8.2         51           1
 H histidine           7.4         46           1
 I isoleucine          3.5         22           1
 K lysine             11.2         70           2
 L leucine             5.5         34           2
 M methionine          0.8          5           1
 N asparagine          1.3          8           1
 P proline             4.0         25           1
 Q glutamine           5.5         34           2
 R arginine            5.5         34           2
 S serine              7.5         47           2
 T threonine           5.9         37           1
 V valine              4.7         29           1
 W tryptophan          0.5          3           1
 Y tyrosine            4.3         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 30 isoform b 
ZNF30                 0.996   zinc finger protein 30 isoform a 
ZNF30                 0.996   zinc finger protein 30 isoform a 
ZNF420                0.546   zinc finger protein 420 
ZNF780B               0.526   zinc finger protein 780B 
ZNF607                0.522   zinc finger protein 607 
ZNF780A               0.522   zinc finger protein 780A isoform b 
ZNF780A               0.522   zinc finger protein 780A isoform b 
ZNF780A               0.518   zinc finger protein 780A isoform a 
ZNF546                0.518   zinc finger protein 546 
ZNF540                0.506   zinc finger protein 540 
ZNF571                0.491   zinc finger protein 571 
ZNF429                0.490   zinc finger protein 429 
ZNF595                0.484   zinc finger protein 595 
ZNF283                0.481   zinc finger protein 283 
ZNF470                0.480   zinc finger protein 470 
ZNF184                0.479   zinc finger protein 184 
ZNF573                0.478   zinc finger protein 573 
ZNF160                0.478   zinc finger protein 160 
ZNF160                0.478   zinc finger protein 160 
ZNF160                0.478   zinc finger protein 160 
ZNF665                0.478   zinc finger protein 665 
LOC100287429          0.477   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.477   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.477   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.477   zinc finger protein 84 
ZNF84                 0.477   zinc finger protein 84 
ZNF135                0.477   zinc finger protein 135 
ZNF14                 0.476   zinc finger protein 14 
ZNF99                 0.476   zinc finger protein 99 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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