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Search of human proteins with 27735131
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27735131 amyotrophic lateral sclerosis 2 (juvenile)
chromosome region, candidate 13 [Homo sapiens]
(345 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosom... 697 0.0
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 330 1e-90
gi|13540590 family with sequence similarity 117, member A [Homo ... 198 7e-51
gi|150418009 transforming, acidic coiled-coil containing protein... 39 0.005
gi|157384971 cyclin G associated kinase [Homo sapiens] 38 0.015
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 37 0.026
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 37 0.034
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 37 0.034
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 37 0.034
gi|55770834 centromere protein F [Homo sapiens] 35 0.075
gi|50083281 KIAA1853 protein [Homo sapiens] 35 0.075
gi|151301154 mucin 6, gastric [Homo sapiens] 35 0.13
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] 35 0.13
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 34 0.22
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 33 0.37
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 33 0.37
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 33 0.37
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 33 0.37
gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo sapi... 33 0.49
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 33 0.49
gi|45827771 autoantigen RCD8 [Homo sapiens] 33 0.49
gi|169183882 PREDICTED: hypothetical protein [Homo sapiens] 32 0.83
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens] 32 0.83
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens] 32 0.83
gi|167736355 mucin 4 isoform a [Homo sapiens] 32 0.83
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 32 0.83
gi|87042275 erythrocyte protein band 4.1-like 4 [Homo sapiens] 32 0.83
gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo sapiens] 32 1.1
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens] 32 1.1
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.1
>gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 13 [Homo sapiens]
Length = 345
Score = 697 bits (1799), Expect = 0.0
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MRDKATQTESAWAEEYSEKKKGSHKRSASWGSTDQLKEIAKLRQQLQRSKHSSRHHRDKE 60
MRDKATQTESAWAEEYSEKKKGSHKRSASWGSTDQLKEIAKLRQQLQRSKHSSRHHRDKE
Sbjct: 1 MRDKATQTESAWAEEYSEKKKGSHKRSASWGSTDQLKEIAKLRQQLQRSKHSSRHHRDKE 60
Query: 61 RQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKE 120
RQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKE
Sbjct: 61 RQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKE 120
Query: 121 EQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNE 180
EQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNE
Sbjct: 121 EQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNE 180
Query: 181 GSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECS 240
GSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECS
Sbjct: 181 GSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECS 240
Query: 241 PKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTT 300
PKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTT
Sbjct: 241 PKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTT 300
Query: 301 TLLQPIAVASLSTNTEQDRVSRGTSTVMPSASLLPPPEPIEEAEG 345
TLLQPIAVASLSTNTEQDRVSRGTSTVMPSASLLPPPEPIEEAEG
Sbjct: 301 TLLQPIAVASLSTNTEQDRVSRGTSTVMPSASLLPPPEPIEEAEG 345
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 330 bits (846), Expect = 1e-90
Identities = 189/322 (58%), Positives = 224/322 (69%), Gaps = 15/322 (4%)
Query: 1 MRDKATQTESAWAEEYSEKKKGSHKRSASWGSTDQLKE-IAKLRQQLQRSKHSSRHHRDK 59
M+DKATQT S WAEE +EK+ SH+RSASWGS DQLKE IAKLRQQLQRSK SSRH ++K
Sbjct: 197 MKDKATQTPSCWAEEGAEKR--SHQRSASWGSADQLKEQIAKLRQQLQRSKQSSRHSKEK 254
Query: 60 ERQSPFHGNHAAINQCQAPVPKSALIPV--IPITKSTGSRFRNSVEGLNQEIE-IIIKET 116
+RQSP HGNH I+ QA +S +P+ I + KS+ SR +VEG++ E+E + IKE
Sbjct: 255 DRQSPLHGNHITISHTQATGSRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIKEN 314
Query: 117 GEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLT 176
KEE P DIPDG RAP P RSSSTRSIDTQTP +R S+ SS S VSP
Sbjct: 315 NGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFC--- 371
Query: 177 ISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVF 236
E + SPCS +DLL D RDK++G++SPLPKYA+SPKPNNSYMFKREPPEGCERVKVF
Sbjct: 372 -PPESQDGSPCSTEDLLYD-RDKDSGSSSPLPKYASSPKPNNSYMFKREPPEGCERVKVF 429
Query: 237 EECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLK---GSGHSLT 293
EE + +Q P F CPDKNKVNFIP +GSAFC V +L PLLP DL LK SG S
Sbjct: 430 EEMASRQPISAPLFSCPDKNKVNFIP-TGSAFCPVKLLGPLLPASDLMLKNSPNSGQSSA 488
Query: 294 VTTGMTTTLLQPIAVASLSTNT 315
+ T L ++ SLS +T
Sbjct: 489 LATLTVEQLSSRVSFTSLSDDT 510
>gi|13540590 family with sequence similarity 117, member A [Homo
sapiens]
Length = 453
Score = 198 bits (503), Expect = 7e-51
Identities = 131/290 (45%), Positives = 170/290 (58%), Gaps = 28/290 (9%)
Query: 3 DKATQTESAWAEEYSEKKKG-SHKRSASWGSTDQLKEIAKLRQQLQRSKHSSRHHRDKER 61
DKATQT +W E E+ +HKRSASWGSTD KEI+KL+QQLQR+K SR ++KER
Sbjct: 118 DKATQTPLSWQELEGERASSCAHKRSASWGSTDHRKEISKLKQQLQRTK-LSRSGKEKER 176
Query: 62 QSPFHGNHAAINQCQAPVPK-SALIPVIPITKSTGSRFRNSVEGLNQEIE-IIIKETGEK 119
SP G+HA +A P + PV+ ++ S+EGLNQE+E + +KE GE
Sbjct: 177 GSPLLGDHAVRGALRASPPSFPSGSPVLRLSPC----LHRSLEGLNQELEEVFVKEQGE- 231
Query: 120 EEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISN 179
EE L DIPDGHRAP P Q S + PG N + S S+S S
Sbjct: 232 EELLRILDIPDGHRAPAP-PQSGSCDHPLLLLEPG-------NLASSPSMSLASPQPCGL 283
Query: 180 EGSEESPCSADDLLVDPRDK----------ENGNNSPLPKYATSPKPNNSYMFKREPPEG 229
EE +A++L P DK E+G+ SP+ +A SP+PN+SY+FKREPPEG
Sbjct: 284 ASHEEHRGAAEELASTPNDKASSPGHPAFLEDGSPSPVLAFAASPRPNHSYIFKREPPEG 343
Query: 230 CERVKVFEECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLP 279
CE+V+VFEE + CPDKNKV+F P +GSAFC V+++KPL P
Sbjct: 344 CEKVRVFEEATSPGPDLAFLTSCPDKNKVHFNP-TGSAFCPVNLMKPLFP 392
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 39.3 bits (90), Expect = 0.005
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 134 APPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLL 193
A PP S + + TPG D ++S SV F T S + PC +
Sbjct: 22 AQPP--GNSQNIKRKQQDTPGSPDH--RDASSIGSVGLGGFCTASESSASLDPCLVSPEV 77
Query: 194 VDPRDKENGNNSPLPKYATSP-------KPNNSYMFKREPPEGC 230
+PR G P SP P++S F PPEGC
Sbjct: 78 TEPRKDPQGARGPEGSLLPSPPPSQEREHPSSSMPFAECPPEGC 121
>gi|157384971 cyclin G associated kinase [Homo sapiens]
Length = 1311
Score = 37.7 bits (86), Expect = 0.015
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 37/181 (20%)
Query: 80 PKSALIPVIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKEEQLIPQDIPDGHRAPPPLV 139
P +A P P+ S+G+ NS N ++ E + +P P H APPP
Sbjct: 954 PPAAADPFGPLLPSSGN---NSQPCSNPDL---FGEFLNSDSVTVPPSFPSAHSAPPPSC 1007
Query: 140 QRS----------SSTRSIDTQTP---GGADRGSNNSSRSQSVSPTSFLTISNEGSEESP 186
S + + P GG + ++ + + +P + + + G + +P
Sbjct: 1008 SADFLHLGDLPGEPSKMTASSSNPDLLGGWAAWTETAASAVAPTPATEGPLFSPGGQPAP 1067
Query: 187 CSAD---------DLLVDPRDKENG-NNSP--------LPKYATSPKPNNSYMFKREPPE 228
C + D D D +G SP +PK AT+PK ++S+ R P +
Sbjct: 1068 CGSQASWTKSQNPDPFADLGDLSSGLQGSPAGFPPGGFIPKTATTPKGSSSWQTSRPPAQ 1127
Query: 229 G 229
G
Sbjct: 1128 G 1128
>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sapiens]
Length = 2961
Score = 37.0 bits (84), Expect = 0.026
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 34/203 (16%)
Query: 116 TGEKEEQLIPQDIPDGHRAPPPLVQRS--SSTRSIDTQTPGGADRGSNNSSRSQSVSPTS 173
TG EEQL + + + +R+ R +D + AD+G S S P+
Sbjct: 1983 TGASEEQLEKKAVQGAELSEAGNGKRAVHEEIRPVDFKQRNKADKGV-----SLSKDPSC 2037
Query: 174 FLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERV 233
IS+ ++ SP + L D D E + P+ + A +P P
Sbjct: 2038 QTQISDSPADASPPTG---LPDAEDSEVSSQKPIEEKAVTPSPE---------------- 2078
Query: 234 KVFEECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLT 293
+VF ECS K++ + A P KSG L+ + L + + +GH L
Sbjct: 2079 QVFAECSQKRILGLLAAMLPPL-------KSGPTVPLIDLEHVLPLMFQVVISNAGH-LN 2130
Query: 294 VTTGMTTTLLQPIAVASLSTNTE 316
T +T LL + + L +
Sbjct: 2131 ETYHLTLGLLGQLIIRLLPAEVD 2153
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 36.6 bits (83), Expect = 0.034
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 23/186 (12%)
Query: 50 KHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEI 109
KHS R R + G+ + + + P S PI + S RNS +
Sbjct: 15 KHSMRTRRSR-------GSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSS 67
Query: 110 EIIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSV 169
ET +K + + ++ A PL + + T ADR S+ +++Q +
Sbjct: 68 NDSKAETVKKSAKKVKEE------ASSPLKSNKRQREKVASDTEE-ADRTSSKKTKTQEI 120
Query: 170 SPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNS--------YM 221
S + + S +S D+ DP+D + N S P SP+ N S M
Sbjct: 121 SRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQM 179
Query: 222 FKREPP 227
+ +PP
Sbjct: 180 LQAQPP 185
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 36.6 bits (83), Expect = 0.034
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 23/186 (12%)
Query: 50 KHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEI 109
KHS R R + G+ + + + P S PI + S RNS +
Sbjct: 569 KHSMRTRRSR-------GSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSS 621
Query: 110 EIIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSV 169
ET +K + + ++ A PL + + T ADR S+ +++Q +
Sbjct: 622 NDSKAETVKKSAKKVKEE------ASSPLKSNKRQREKVASDTEE-ADRTSSKKTKTQEI 674
Query: 170 SPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNS--------YM 221
S + + S +S D+ DP+D + N S P SP+ N S M
Sbjct: 675 SRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQM 733
Query: 222 FKREPP 227
+ +PP
Sbjct: 734 LQAQPP 739
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 36.6 bits (83), Expect = 0.034
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 23/186 (12%)
Query: 50 KHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEI 109
KHS R R + G+ + + + P S PI + S RNS +
Sbjct: 569 KHSMRTRRSR-------GSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSS 621
Query: 110 EIIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSV 169
ET +K + + ++ A PL + + T ADR S+ +++Q +
Sbjct: 622 NDSKAETVKKSAKKVKEE------ASSPLKSNKRQREKVASDTEE-ADRTSSKKTKTQEI 674
Query: 170 SPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNS--------YM 221
S + + S +S D+ DP+D + N S P SP+ N S M
Sbjct: 675 SRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQM 733
Query: 222 FKREPP 227
+ +PP
Sbjct: 734 LQAQPP 739
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 35.4 bits (80), Expect = 0.075
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 13/187 (6%)
Query: 37 KEIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGS 96
K+I KL Q+L+R K + + + ++N C P K P+ P +GS
Sbjct: 109 KQIEKLEQELKRCKSELERSQQAAQSAD-----VSLNPCNTP-QKIFTTPLTPSQYYSGS 162
Query: 97 RFRNSVEGLNQEIE---IIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTP 153
++ + E N+E+E + E + + Q +P + + +S+ Q
Sbjct: 163 KYEDLKEKYNKEVEERKRLEAEVKALQAKKASQTLPQATMNHRDIARHQASSSVFSWQQE 222
Query: 154 GGADRGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKENG--NNSPLPKYA 211
S+NS R+ S S G +E S L + RD + +NS P
Sbjct: 223 KTPSHLSSNSQRTPIRRDFSASYFS--GEQEVTPSRSTLQIGKRDANSSFFDNSSSPHLL 280
Query: 212 TSPKPNN 218
K N
Sbjct: 281 DQLKAQN 287
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 35.4 bits (80), Expect = 0.075
Identities = 71/362 (19%), Positives = 128/362 (35%), Gaps = 55/362 (15%)
Query: 2 RDKATQTESAWAEEYS------EKKKGS--HKRSASWGSTDQLKEIAKLRQQLQRSKHSS 53
+ K+T+ + + YS +KKK S HKR S+ + + ++ +H
Sbjct: 112 KKKSTRKKRRRSSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKSKRRDEKRHK- 170
Query: 54 RHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEIEIII 113
+ R + R+S H +H ++ Q+ + P + + R R+ EG
Sbjct: 171 KQSRSRPRKSHRHRHHRCPSRSQSSESR-------PSSCESRHRGRSPEEGQKSR----- 218
Query: 114 KETGEKEEQLIPQDIPDGHRAPPP--------------LVQRSSSTRSIDTQT--PGGAD 157
+ + + + +D P+ + PP ++ S S + T+T P
Sbjct: 219 RRHSRRCSKTLCKDSPEAQSSRPPSQPLQMLGYLSARGVITGSGSAADLFTKTASPLTTS 278
Query: 158 RGSNNS--SRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPL-PKYATSP 214
RG + S + + SP S T S + S L R+ +GN S + TS
Sbjct: 279 RGRSQEYDSGNDTSSPPSTQTSSARSRGQEKGSPSGGLSKSRELNSGNTSDSGNSFTTSS 338
Query: 215 KPNNSYMFKREPPEGCERVKVFEECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSIL 274
N M + P R + + P C + K + +P + +
Sbjct: 339 PQNKGAMLENLSPTSRGR--------ESRGFQSPCLECAEVKKSSLVPSTARS------- 383
Query: 275 KPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPIAVASLSTNTEQDRVSRGTSTVMPSASLL 334
P+ + S S + ++ P S ST++E+ SR S S
Sbjct: 384 SPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSRSTSSEKRSYSRSPSYSSKSGKRS 443
Query: 335 PP 336
PP
Sbjct: 444 PP 445
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 34.7 bits (78), Expect = 0.13
Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 31/225 (13%)
Query: 129 PDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSF--LTISNEGSEESP 186
P G PP ++ + ST + TP + +SS S + +PTS T S E +P
Sbjct: 1480 PTGTIPPPTTLKATGSTHTAPPITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVTP 1539
Query: 187 CSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVKVFEECSP----- 241
S + +P ATS +P + PP G F P
Sbjct: 1540 TSTTTITPNPTSTRTRTPVAHTNSATSSRPPPPFT-THSPPTGS---SPFSSTGPMTATS 1595
Query: 242 -KQLHEIPAFYCPDKNKVNFIPKSGSAFCLVSILKPLLPT-------------------P 281
K P P +P ++ S + PT P
Sbjct: 1596 FKTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVITPTHAQMATSASIHSMPTGTIPP 1655
Query: 282 DLTLKGSGHSLTVTTGMTTTLLQPIAVASLSTNTEQDRVSRGTST 326
TLK +G + T T TT A++SL+T + TS+
Sbjct: 1656 PTTLKATGSTHTAPTMTLTTSGTSQALSSLNTAKTSTSLHSHTSS 1700
Score = 34.7 bits (78), Expect = 0.13
Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 27/238 (11%)
Query: 128 IPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTS--FLTISNEGSEES 185
+P G PP ++ + ST + TP + + SS S + + TS + T S E +
Sbjct: 1872 MPTGTIPPPTTIKATGSTHTAPPMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVT 1931
Query: 186 PCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMF-KREPPEGCERVKVFEECSPKQL 244
P S + + P+ G +P+ ++ F PP G +
Sbjct: 1932 PTSTTN--ITPKHTSTGTRTPVAHTTSASSSRLPTPFTTHSPPTGSSPFSSTGPMTATSF 1989
Query: 245 HEIPAFYCPDKNKVNF---IPKSGSAFCLVSILKPLLPT-------------------PD 282
+ P + +P ++ S ++ T P
Sbjct: 1990 QTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVIITTHTQMATSASIHSTPTGTVPPP 2049
Query: 283 LTLKGSGHSLTVTTGMTTTLLQPIAVASLSTNTEQDRVSRGTSTVMPSASLLPPPEPI 340
TLK +G + T TT +S ST T +S + ++S PP PI
Sbjct: 2050 TTLKATGSTHTAPPMTVTTSGTSQTHSSFSTATASSSFISSSSWLPQNSSSRPPSSPI 2107
>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
Length = 1430
Score = 34.7 bits (78), Expect = 0.13
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 24/204 (11%)
Query: 4 KATQTESAWAEEYSEKKKGSHKRSASWGSTDQLKEIAKLRQQLQRSKHSSRHHRDKERQ- 62
KA TE+ E ++KK + SA+ G L+ + Q L R S ++
Sbjct: 689 KAYSTENYSLESQKKRKKSRGQTSAANG----LRAESLDDQMLSRESSSQAPYKSVTSLC 744
Query: 63 SPFHGNHAAINQCQAPVPKSALIP-VIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKEE 121
+P + N + +P+ +P ++ I K+ ++NS + + + E EE
Sbjct: 745 APEYENIRHYEE----IPEYENLPFIMAIRKTQELEWQNSSSMEDADANVY-----EVEE 795
Query: 122 QLIPQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEG 181
P + PDG P Q SSS S + Q G G S + ++ + +S+E
Sbjct: 796 ---PYEAPDGQLQLGPRHQHSSSGASQEEQNDLGL--GDLPSDEEEIINSSDEDDVSSES 850
Query: 182 SEESPCSADDLLVDPRDKENGNNS 205
S+ P D L D +D++NG S
Sbjct: 851 SKGEP----DPLEDKQDEDNGMKS 870
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.9 bits (76), Expect = 0.22
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 142 SSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKEN 201
SSS+ S + + + S++SS S S S +S + S+ E+S CS+DD
Sbjct: 2634 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGP 2693
Query: 202 GNNSPLPKYAT 212
+ LP AT
Sbjct: 2694 SAQAALPTKAT 2704
Score = 29.6 bits (65), Expect = 4.1
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 7/112 (6%)
Query: 126 QDIPDGHRAPPPLVQRSSSTRSIDTQTPG------GADR-GSNNSSRSQSVSPTSFLTIS 178
Q +P + P P + + ++ D P G +R + + +SP+
Sbjct: 1085 QALPPHYGRPYPFLLQPTAAADADGLAPDVPLPADGPERLALSPEDKPIRLSPSKITEPL 1144
Query: 179 NEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGC 230
EG EE P + ++ + D + G P + P P M P GC
Sbjct: 1145 REGPEEEPLAEREVKAEVEDMDEGPTELPPLESPLPLPAAEAMATPSPAGGC 1196
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 33.1 bits (74), Expect = 0.37
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 26 RSASWGSTDQLKEIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALI 85
+S SW +D L++ + +S+H + ++ PF N + P PK L+
Sbjct: 787 KSTSWHHSDLLRKGGE-ESLRAKSEHEQKTSHQLQKAMPFLQN-------RGPTPKPDLL 838
Query: 86 PVIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSST 145
+ F+ + L ++ +I K+T ++ Q + HR P LV +S
Sbjct: 839 R----ENNNPVEFKTTASVLPNQVSVITKQTRPEKVQSAKLEHLRPHRVEPTLVTENSGN 894
Query: 146 RS 147
++
Sbjct: 895 KT 896
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 33.1 bits (74), Expect = 0.37
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 130 DGHRAPPPLVQRSSSTRS-----IDTQTPGGADRGSNNSSRSQSVSPTSFLTISN---EG 181
DGH P PL S S + T T G D + SS +V+ + S E
Sbjct: 935 DGHPEPSPLEDLSPCPASCGSGVVTTVTVSGRDPRTAPSSSCTAVASAASRPDSTHMVEA 994
Query: 182 SEESPCSADDLLVDPRD-KENGNNSPLPKY-ATSPKPNNSYMFKREPPEG 229
++ P ++ P+ ++SP P+Y + P PN S R PPEG
Sbjct: 995 RQDVPKPVLTSVMVPKSILAKPSSSPDPRYLSVPPSPNISTSESRSPPEG 1044
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 33.1 bits (74), Expect = 0.37
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 130 DGHRAPPPLVQRSSSTRS-----IDTQTPGGADRGSNNSSRSQSVSPTSFLTISN---EG 181
DGH P PL S S + T T G D + SS +V+ + S E
Sbjct: 935 DGHPEPSPLEDLSPCPASCGSGVVTTVTVSGRDPRTAPSSSCTAVASAASRPDSTHMVEA 994
Query: 182 SEESPCSADDLLVDPRD-KENGNNSPLPKY-ATSPKPNNSYMFKREPPEG 229
++ P ++ P+ ++SP P+Y + P PN S R PPEG
Sbjct: 995 RQDVPKPVLTSVMVPKSILAKPSSSPDPRYLSVPPSPNISTSESRSPPEG 1044
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 33.1 bits (74), Expect = 0.37
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 35 QLKEIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALIPVIPITKST 94
+L+E++ L+ ++ R+ + +R SP H+ QC +P P + P P +S
Sbjct: 307 RLRELSSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPCPPCQSP 366
Query: 95 GSRFRNSVEGLNQEIEIIIKETGEKEEQLIPQDIPDGHRAPPPLVQRSSSTR 146
+ R+ V ++ P +P PP Q S R
Sbjct: 367 VPQRRSPVPPCPSP-----QQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQR 413
>gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo
sapiens]
Length = 824
Score = 32.7 bits (73), Expect = 0.49
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 103 EGLNQEIEIIIKETGEKEEQLIPQDIPDGHRAPPPLVQR----SSSTRSIDTQTPGGADR 158
EGL + +EII TG ++ + PQ +G + Q+ +SS++S D+++ +D
Sbjct: 604 EGLEKPVEIIRHYTGPGDQTVNPQ---NGFVRNKVIEQKVPVLASSSQSGDSES--DSDS 658
Query: 159 GSNNSSRSQSVSPTSFLTISNEGS-EESPCSADDLLVDPRDKENGNNSPLP-KYATSP 214
S+ +S SQS S+L S++ ++S + D + NG+++P P KY SP
Sbjct: 659 YSSRTS-SQSKGNKSYLEGSSDNQLKDSESTPVDDRISLEQPPNGSDTPNPEKYQESP 715
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 32.7 bits (73), Expect = 0.49
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 133 RAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEGS-EESPCSADD 191
+ PPP S T +I Q PG S N T+F+ I N GS SP + D
Sbjct: 816 KLPPPQGSSESCTVNIPQQPPGSLSIASPN---------TAFIPIHNPGSFPGSPVATTD 866
Query: 192 LLVDPRDKENGNNSPLPKY----ATSPKPNN 218
+ + G N +P+ T P+P N
Sbjct: 867 PITKSASQVVGLNQMVPQIEGNTGTVPQPTN 897
>gi|45827771 autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 32.7 bits (73), Expect = 0.49
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 253 PDKNKVNFIPKSGSAFCLVSILKPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPIAVASLS 312
PD ++ +P L S KP L TPD + S SL T ++ + +S S
Sbjct: 567 PDLRRIVELPAPADFLSLSSETKPKLMTPDAFMTPSA-SLQQITASPSSSSSGSSSSSSS 625
Query: 313 TNTEQDRVSRGTSTVMPSASLLPPPEPI 340
+++ VS +ST SL PPE +
Sbjct: 626 SSSSLTAVSAMSSTSAVDPSLTRPPEEL 653
>gi|169183882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.83
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 158 RGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKP- 216
RG + P+S LT + + +A L PR + + LP Y
Sbjct: 146 RGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGL 205
Query: 217 NNSYMFKREPPEGCERVKVFEECSPKQLHEI 247
+ + R P G ER +V C+P+ H++
Sbjct: 206 SRGHKDARPGPPGQEREQVLRACAPQPQHQV 236
>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.83
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 158 RGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKP- 216
RG + P+S LT + + +A L PR + + LP Y
Sbjct: 146 RGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGL 205
Query: 217 NNSYMFKREPPEGCERVKVFEECSPKQLHEI 247
+ + R P G ER +V C+P+ H++
Sbjct: 206 SRGHKDARPGPPGQEREQVLRACAPQPQHQV 236
>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.83
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 158 RGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSPKP- 216
RG + P+S LT + + +A L PR + + LP Y
Sbjct: 146 RGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGL 205
Query: 217 NNSYMFKREPPEGCERVKVFEECSPKQLHEI 247
+ + R P G ER +V C+P+ H++
Sbjct: 206 SRGHKDARPGPPGQEREQVLRACAPQPQHQV 236
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 32.0 bits (71), Expect = 0.83
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 125 PQDIPDGHRAPPPLVQRSSS----TRSIDTQTPGGADRGSN-----NSSRSQSVSPTSFL 175
P GH P P+ SS+ T + +P A G + S S T+ L
Sbjct: 1574 PSSASTGHTTPLPVTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDTTPL 1633
Query: 176 TISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATS 213
++N S + + + P G+ +PLP +TS
Sbjct: 1634 PVTNASSLSTGHATPLHVTSPSSASTGHATPLPVTSTS 1671
Score = 29.3 bits (64), Expect = 5.4
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 131 GHRAPPPLVQRSSSTRSIDTQTP---------GGADRGSNNSSRSQSVSPTSFLTISNEG 181
GH P P+ SS+T T+ P G A S S S T+ L +++
Sbjct: 1676 GHATPLPVTGLSSATTDDTTRLPVTDVSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPS 1735
Query: 182 SEESPCSADDLLVDPRDKENGNNSPLPKYATS 213
S + ++ L+ D G +PLP TS
Sbjct: 1736 SASTGHASPLLVTDASSASTGQATPLPVTDTS 1767
Score = 29.3 bits (64), Expect = 5.4
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 116 TGEKEEQLIPQ--DIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTS 173
TG+ L+ + GH P P+ SS++ T+ P D S ++ ++ + TS
Sbjct: 3451 TGDTTPLLVTDASSVSTGHATPLPVTDTSSASTGDTTRLP-VTDTSSASTGQATPLPVTS 3509
Query: 174 FLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATS 213
++S + +P L+ D G+ +PLP TS
Sbjct: 3510 LSSVST--GDTTPL----LVTDASSVSTGHATPLPVTDTS 3543
Score = 28.9 bits (63), Expect = 7.0
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 131 GHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEGSEESPCSAD 190
GH P P+ SS++ T P G D S ++ + + T ++S + P
Sbjct: 2444 GHATPLPVTSTSSASTGDTTPLP-GTDTSSVSTGHTTPLLVTDASSVSTGDTTRLP---- 2498
Query: 191 DLLVDPRDKENGNNSPLP 208
+ P G+ +PLP
Sbjct: 2499 --VTSPSSASTGHTTPLP 2514
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 32.0 bits (71), Expect = 0.83
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 153 PGGADRGSNNSSRSQSVSPTSFLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYAT 212
P GA+ G+ SS S++ P + E E AD P D+ N N P PK A
Sbjct: 1171 PKGAE-GNGKSSASKAKEPPFVRKSALEQPETGKAGADG--GTPTDRYNSYNRPRPKAAA 1227
Query: 213 SPKPNNSYMFKREPPEG 229
+P + PPEG
Sbjct: 1228 APAATTA----TPPPEG 1240
>gi|87042275 erythrocyte protein band 4.1-like 4 [Homo sapiens]
Length = 686
Score = 32.0 bits (71), Expect = 0.83
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 32 STDQLKEIAKLRQQLQ------RSKHSSRHHRDKERQSPFHGNHAAINQCQAPVPKSALI 85
S +QLKEI + + Q R HS R +R R G + +++ + K+ L+
Sbjct: 567 SEEQLKEIPYTKIETQGDPIRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNS---KTDLV 623
Query: 86 PVIPITKSTGSR 97
P +P+T S+ ++
Sbjct: 624 PPLPVTHSSDAQ 635
>gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo sapiens]
Length = 767
Score = 31.6 bits (70), Expect = 1.1
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 87 VIPITKSTGSRF------RNSVEGLNQEIEIIIKETGEKEE-QLIPQDIPDGHRAPPPLV 139
++P ++TG F ++S+ ++ ++ K +E QL P D+ +G P +
Sbjct: 412 ILPHHQNTGGFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKL 471
Query: 140 QRSSSTRSIDTQTPGGADRGSNNSSRSQSV-SPTSFLTISNEGSEESP---CSADDLLVD 195
+ S T + DT+ + NN S+ V P + G +E P DD L
Sbjct: 472 ESPSFTGTGDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFP 531
Query: 196 PRDKENGNNSPLPKY-----ATSPKPNNSYMFKRE 225
P +K + P+ T K YM +E
Sbjct: 532 PIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKE 566
>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
Length = 1292
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 119 KEEQLIPQDIPDGHRAP-PPLVQRSSSTRSIDTQ----TPGGADRGSNNSSRSQSVSPTS 173
++ Q +P +P +P PP V S + + + PG A +GS++ +Q ++ S
Sbjct: 1153 EKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSDSEGGAQGLASAS 1212
Query: 174 FLTISNEGSEESPCSADDLLVDPRDKENGNNSPLPKYATSP 214
+++ SE +P ++ V P+ + S LP+ + P
Sbjct: 1213 -RDHTDQTSETAPDASVPPSVKPKKRRKSYRSFLPEKSGYP 1252
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 1.1
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 125 PQDIPDGHRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEGSEE 184
P+ P +P P V+ S R + S++ S S S S + T
Sbjct: 905 PRQSPSRSSSPQPKVKAIISPR-----------QRSHSGSSSPSPSRVTSRTTPRRSRSV 953
Query: 185 SPCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSY 220
SPCS + + PR +G++SP K P S+
Sbjct: 954 SPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSH 989
Score = 30.8 bits (68), Expect = 1.9
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 141 RSSSTRSIDTQTPGGADRGSNNSSRSQSVSPT-----SFLTISNEGSEESPCSADDLLVD 195
R+S RS +P + +S RS+S+S S L++ S SPC
Sbjct: 735 RTSQRRSRSNSSPE-MKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTP 793
Query: 196 PRDKENGNNSPLPKYATSPKPNNS 219
PR +G++ P K T P+ + S
Sbjct: 794 PRRSRSGSSQPKAKSRTPPRRSRS 817
Score = 29.6 bits (65), Expect = 4.1
Identities = 46/183 (25%), Positives = 68/183 (37%), Gaps = 17/183 (9%)
Query: 71 AINQCQAPVPKSALIPVIPITKSTGSRFRNSVEGLNQEIEIIIKETGEKEEQLIPQDIPD 130
A+ Q P +S P + T R R+ E + + G++ Q++
Sbjct: 1488 ALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDV 1547
Query: 131 GHRAPPPLVQRSSSTRSID----TQTPGGADRGSNNSSRSQSVSPTSFLTISNEGSEESP 186
A P +RS S S D T+TP R + S S V S L+ S SP
Sbjct: 1548 KPSASPQ--ERSESDSSPDSKAKTRTPL---RQRSRSGSSPEVDSKSRLSPRRSRSGSSP 1602
Query: 187 CSADDLLVDPRDKENGNNSPLPKYATSP-------KPNNSYMFKREPPEGCERVKVFEEC 239
D PR + ++SP PK A +P + +S + PEG + E
Sbjct: 1603 EVKDKPRAAPRAQSGSDSSPEPK-APAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEH 1661
Query: 240 SPK 242
PK
Sbjct: 1662 PPK 1664
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,718,578
Number of Sequences: 37866
Number of extensions: 821935
Number of successful extensions: 3475
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3311
Number of HSP's gapped (non-prelim): 253
length of query: 345
length of database: 18,247,518
effective HSP length: 103
effective length of query: 242
effective length of database: 14,347,320
effective search space: 3472051440
effective search space used: 3472051440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.