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Search of human proteins with 27734865
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27734865 unc-5 homolog C-like [Homo sapiens]
(518 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27734865 unc-5 homolog C-like [Homo sapiens] 1081 0.0
gi|16933525 unc5C [Homo sapiens] 105 8e-23
gi|32261318 unc-5 homolog B [Homo sapiens] 101 2e-21
gi|62243567 netrin receptor Unc5h1 [Homo sapiens] 100 5e-21
gi|209977117 unc-5 homolog D [Homo sapiens] 95 1e-19
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 65 1e-10
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 65 1e-10
gi|215598574 ankyrin 1 isoform 9 [Homo sapiens] 51 3e-06
gi|70780359 ankyrin 1 isoform 1 [Homo sapiens] 51 3e-06
gi|70780357 ankyrin 1 isoform 3 [Homo sapiens] 51 3e-06
gi|70780355 ankyrin 1 isoform 2 [Homo sapiens] 51 3e-06
gi|70780353 ankyrin 1 isoform 4 [Homo sapiens] 51 3e-06
gi|32967599 ankyrin 3 isoform 2 [Homo sapiens] 41 0.002
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 41 0.002
gi|188595682 ankyrin 2 isoform 3 [Homo sapiens] 39 0.015
gi|52426737 ankyrin 2 isoform 2 [Homo sapiens] 39 0.015
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 39 0.015
gi|157502191 putative binding protein 7a5 [Homo sapiens] 35 0.22
gi|7657562 SH3-domain binding protein 4 [Homo sapiens] 34 0.28
gi|197276654 myeloid differentiation primary response gene 88 [H... 32 1.4
gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens] 31 2.4
gi|126723390 ankyrin repeat domain 24 [Homo sapiens] 31 2.4
gi|32699038 sterile alpha motif domain containing 7 [Homo sapiens] 31 2.4
gi|118572606 hemicentin 1 [Homo sapiens] 30 4.1
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 30 4.1
gi|61742786 leucine rich repeat and death domain containing prot... 30 5.3
gi|61742784 leucine rich repeat and death domain containing prot... 30 5.3
gi|61742782 leucine rich repeat and death domain containing prot... 30 5.3
gi|57634534 nucleoporin 205kDa [Homo sapiens] 30 5.3
gi|148839296 immunoglobulin-like and fibronectin type III domain... 30 5.3
>gi|27734865 unc-5 homolog C-like [Homo sapiens]
Length = 518
Score = 1081 bits (2795), Expect = 0.0
Identities = 518/518 (100%), Positives = 518/518 (100%)
Query: 1 MCPQESSFQPSQFLLLVGVPVASVLLLAQCLRWHCPRRLLGACWTLNGQEEPVSQPTPQL 60
MCPQESSFQPSQFLLLVGVPVASVLLLAQCLRWHCPRRLLGACWTLNGQEEPVSQPTPQL
Sbjct: 1 MCPQESSFQPSQFLLLVGVPVASVLLLAQCLRWHCPRRLLGACWTLNGQEEPVSQPTPQL 60
Query: 61 ENEVSRQHLPATLPEMVAFYQELHTPTQGQTMVRQLMHKLLVFSAREVDHRGGCLMLQDT 120
ENEVSRQHLPATLPEMVAFYQELHTPTQGQTMVRQLMHKLLVFSAREVDHRGGCLMLQDT
Sbjct: 61 ENEVSRQHLPATLPEMVAFYQELHTPTQGQTMVRQLMHKLLVFSAREVDHRGGCLMLQDT 120
Query: 121 GISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHGASFLKPCTLT 180
GISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHGASFLKPCTLT
Sbjct: 121 GISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHGASFLKPCTLT 180
Query: 181 FKHCAEQPSHARTYSSNTTLLDAKVWRPLGRPGAHASRDECRIHLSHFSLYTCVLEAPVG 240
FKHCAEQPSHARTYSSNTTLLDAKVWRPLGRPGAHASRDECRIHLSHFSLYTCVLEAPVG
Sbjct: 181 FKHCAEQPSHARTYSSNTTLLDAKVWRPLGRPGAHASRDECRIHLSHFSLYTCVLEAPVG 240
Query: 241 REARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWALTNEQPHGGRLRGPCQLFDF 300
REARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWALTNEQPHGGRLRGPCQLFDF
Sbjct: 241 REARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWALTNEQPHGGRLRGPCQLFDF 300
Query: 301 NGARGDQCLKLTYISEGWENVDDSSCQLVPHLHIWHGKCPFRSFCFRRKAADENEDCSAL 360
NGARGDQCLKLTYISEGWENVDDSSCQLVPHLHIWHGKCPFRSFCFRRKAADENEDCSAL
Sbjct: 301 NGARGDQCLKLTYISEGWENVDDSSCQLVPHLHIWHGKCPFRSFCFRRKAADENEDCSAL 360
Query: 361 TNEIIVTMHTFQDGLETKYMEILRFQASEEESWAAPPPVSQPPPCNRLPPELFEQLRMLL 420
TNEIIVTMHTFQDGLETKYMEILRFQASEEESWAAPPPVSQPPPCNRLPPELFEQLRMLL
Sbjct: 361 TNEIIVTMHTFQDGLETKYMEILRFQASEEESWAAPPPVSQPPPCNRLPPELFEQLRMLL 420
Query: 421 EPNSITGNDWRGLASHLGLCGMKIRFLSCQRSPAAAILELFEEQNGSLQELHYLMTVMER 480
EPNSITGNDWRGLASHLGLCGMKIRFLSCQRSPAAAILELFEEQNGSLQELHYLMTVMER
Sbjct: 421 EPNSITGNDWRGLASHLGLCGMKIRFLSCQRSPAAAILELFEEQNGSLQELHYLMTVMER 480
Query: 481 LDCASAIQNYLSGTHGGSPGPERGGARDNQGLELDEKL 518
LDCASAIQNYLSGTHGGSPGPERGGARDNQGLELDEKL
Sbjct: 481 LDCASAIQNYLSGTHGGSPGPERGGARDNQGLELDEKL 518
>gi|16933525 unc5C [Homo sapiens]
Length = 931
Score = 105 bits (263), Expect = 8e-23
Identities = 117/465 (25%), Positives = 193/465 (41%), Gaps = 52/465 (11%)
Query: 52 PVSQPTPQLENEVSRQHLPATLPEMVAFYQELHTPTQGQTMVRQLMHKLLVFS-AREVDH 110
P+ P P L+ +V T + ++ + +P Q+++ L S AR+ D
Sbjct: 469 PILDPLPNLKIKVYNTSGAVTPQDDLSEFTSKLSPQMTQSLLENEALSLKNQSLARQTDP 528
Query: 111 R----------GGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLV 160
GG L++ ++G+SLLIP GA+ GR + + + + P + +Q L+
Sbjct: 529 SCTAFGSFNSLGGHLIVPNSGVSLLIPAGAIPQGRVYEMYVTVHRKETMRPPMDDSQTLL 588
Query: 161 SPVVACGPHGASFLKPCTLTFKHCAEQPSHARTYSSNTTLLDAKVWRPLGRPGAH----- 215
+PVV+CGP GA +P LT HCA+ + + W + G
Sbjct: 589 TPVVSCGPPGALLTRPVVLTMHHCADPNTEDWKILLKNQAAQGQ-WEDVVVVGEENFTTP 647
Query: 216 ----ASRDECRIHLSHFSLYTCVLEAPVGREARKWLQLAVFCSPLVPGQSHLQLRIYFLN 271
+ C I + S Y V + + A K L+LA+F PL +R+Y L+
Sbjct: 648 CYIKLDAEACHILTENLSTYALVGHSTT-KAAAKRLKLAIF-GPLCCSSLEYSIRVYCLD 705
Query: 272 NTPCALQWALTNEQPHGGRLRGPCQLFDFNGARGDQCLKLTYISEG-WENVDDSSCQLVP 330
+T AL+ L E+ GG+L + F G+ + L + I+ W++ + Q +P
Sbjct: 706 DTQDALKEILHLERQTGGQLLEEPKALHFKGSTHNLRLSIHDIAHSLWKSKLLAKYQEIP 765
Query: 331 HLHIWHGK-----CPFRSFCFRRKAADENEDCSALTNEIIVTMHTFQDGLETKYMEILRF 385
H+W G C F E S T E++ + Q E + + L
Sbjct: 766 FYHVWSGSQRNLHCTFTL-----------ERFSLNTVELVCKLCVRQVEGEGQIFQ-LNC 813
Query: 386 QASEEESWAAPPPVSQP---------PPCNRLPPELFEQLRMLLEPNSITGNDWRGLASH 436
SEE + P+ P P +P + ++L L+ G+DWR LA
Sbjct: 814 TVSEEPT-GIDLPLLDPANTITTVTGPSAFSIPLPIRQKLCSSLDAPQTRGHDWRMLAHK 872
Query: 437 LGLCGMKIRFLSCQRSPAAAILELFEEQNGSLQELHYLMTVMERL 481
L L + + + + SP IL+L+E QN L L V+E +
Sbjct: 873 LNL-DRYLNYFATKSSPTGVILDLWEAQNFPDGNLSMLAAVLEEM 916
>gi|32261318 unc-5 homolog B [Homo sapiens]
Length = 945
Score = 101 bits (251), Expect = 2e-21
Identities = 102/388 (26%), Positives = 161/388 (41%), Gaps = 28/388 (7%)
Query: 112 GGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHGA 171
GG L + TG+SLL+P GA+ G+ + L++ S P Q ++SP V CGP G
Sbjct: 553 GGRLSIPGTGVSLLVPNGAIPQGKFYEMYLLINKAESTLPLSEGTQTVLSPSVTCGPTGL 612
Query: 172 SFLKPCTLTFKHCAE-----------QPSHARTYSSNTTLLDAKVWRPLGRPGAHASRDE 220
+P LT HCAE +H + TL + + P
Sbjct: 613 LLCRPVILTMPHCAEVSARDWIFQLKTQAHQGHWEEVVTLDEETLNTPC---YCQLEPRA 669
Query: 221 CRIHLSHFSLYTCVLEAPVGREARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWA 280
C I L Y E+ R A K LQLAVF +P + LR+Y L +TP AL+
Sbjct: 670 CHILLDQLGTYVFTGES-YSRSAVKRLQLAVF-APALCTSLEYSLRVYCLEDTPVALKEV 727
Query: 281 LTNEQPHGGRLRGPCQLFDFNGARGDQCLKLTYISEG-WENVDDSSCQLVPHLHIWHG-- 337
L E+ GG L + F + + L L + W + + Q +P HIW G
Sbjct: 728 LELERTLGGYLVEEPKPLMFKDSYHNLRLSLHDLPHAHWRSKLLAKYQEIPFYHIWSGSQ 787
Query: 338 KCPFRSFCFRRKAADENEDCSALTNEIIVTMHTFQDGLETKYMEILRFQASEEESWAAPP 397
K +F R + E LT +I V + + + + A ++ + P
Sbjct: 788 KALHCTFTLERHSLASTE----LTCKICVRQVEGEGQIFQLHTTLAETPAGSLDTLCSAP 843
Query: 398 ----PVSQPPPCNRLPPELFEQLRMLLEPNSITGNDWRGLASHLGLCGMKIRFLSCQRSP 453
P ++P + +++ L+ + GNDWR LA L + + + + + SP
Sbjct: 844 GSTVTTQLGPYAFKIPLSIRQKICNSLDAPNSRGNDWRMLAQKLSM-DRYLNYFATKASP 902
Query: 454 AAAILELFEEQNGSLQELHYLMTVMERL 481
IL+L+E +L+ L + +E +
Sbjct: 903 TGVILDLWEALQQDDGDLNSLASALEEM 930
>gi|62243567 netrin receptor Unc5h1 [Homo sapiens]
Length = 842
Score = 99.8 bits (247), Expect = 5e-21
Identities = 102/386 (26%), Positives = 167/386 (43%), Gaps = 42/386 (10%)
Query: 112 GGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHGA 171
GG LM+ +TGISLLIPP A+ G+ + L L L+ Q L+SP+V+CGP G
Sbjct: 451 GGRLMIPNTGISLLIPPDAIPRGKIYEIYLTLHKPEDVRLPLAGCQTLLSPIVSCGPPGV 510
Query: 172 SFLKPCTLTFKHCAEQPSHARTYSSNTTLLDAKVWRPLGRPGAHA---------SRDECR 222
+P L HC E + + + W + G A C
Sbjct: 511 LLTRPVILAMDHCGEPSPDSWSLRLKKQSCEGS-WEDVLHLGEEAPSHLYYCQLEASACY 569
Query: 223 IHLSHFSLYTCVLEAPVGREARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWALT 282
+ + V EA + A K L+L +F +P+ +R+Y L++T AL+ +
Sbjct: 570 VFTEQLGRFALVGEA-LSVAAAKRLKLLLF-APVACTSLEYNIRVYCLHDTHDALKEVVQ 627
Query: 283 NEQPHGGRLRGPCQLFDFNGARGDQCLKLTYI-SEGWENVDDSSCQLVPHLHIWHGKCPF 341
E+ GG+L ++ F + + L + + S W++ S Q +P HIW+G +
Sbjct: 628 LEKQLGGQLIQEPRVLHFKDSYHNLRLSIHDVPSSLWKSKLLVSYQEIPFYHIWNGTQRY 687
Query: 342 RSFCFRRKAADENEDCSALTNEIIVTMHTFQ---DG----------LETKYMEILRFQAS 388
F E S T+++ + +Q DG +T++ E+L ++
Sbjct: 688 LHCTFTL------ERVSPSTSDLACKLWVWQVEGDGQSFSINFNITKDTRFAELLALESE 741
Query: 389 EEESWAAPPPVSQPPPCNRLPPELFEQLRMLLEPNSITGNDWRGLASHLGLCGMKIRFLS 448
A P P ++P + +++ L+P G DWR LA L L + F +
Sbjct: 742 ------AGVPALVGPSAFKIPFLIRQKIISSLDPPCRRGADWRTLAQKLHL-DSHLSFFA 794
Query: 449 CQRSPAAAILELFEEQ---NGSLQEL 471
+ SP A IL L+E + NG+L +L
Sbjct: 795 SKPSPTAMILNLWEARHFPNGNLSQL 820
>gi|209977117 unc-5 homolog D [Homo sapiens]
Length = 953
Score = 95.1 bits (235), Expect = 1e-19
Identities = 99/392 (25%), Positives = 162/392 (41%), Gaps = 36/392 (9%)
Query: 110 HRGGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQG---LVSPVVAC 166
H GG L++ +TG+SLLIP GA+ E S + ++ Q+ G L+SP V C
Sbjct: 550 HLGGRLVMPNTGVSLLIPHGAI----PEENSWEIYMSINQGEPSLQSDGSEVLLSPEVTC 605
Query: 167 GPHGASFLKPCTLTFKHCAEQPSHARTYSSNTTLLDAKVWRPL-----GRPGAHASRD-- 219
GP P LT HCA+ S K W + + D
Sbjct: 606 GPPDMIVTTPFALTIPHCADVSSEHWNIHLKKRTQQGK-WEEVMSVEDESTSCYCLLDPF 664
Query: 220 ECRIHLSHFSLYTCVLEAPVGREARKWLQLAVF----CSPLVPGQSHLQLRIYFLNNTPC 275
C + L F Y E P+ A K L++AVF C+ L LR+Y ++NTPC
Sbjct: 665 ACHVLLDSFGTYALTGE-PITDCAVKQLKVAVFGCMSCNSL-----DYNLRVYCVDNTPC 718
Query: 276 ALQWALTNEQPHGGRLRGPCQLFDFNGARGDQCLKLTYISEG-WENVDDSSCQLVPHLHI 334
A Q +++E+ GG+L +L F G + + I W ++CQ VP +
Sbjct: 719 AFQEVVSDERHQGGQLLEEPKLLHFKGNTFSLQISVLDIPPFLWRIKPFTACQEVPFSRV 778
Query: 335 W-HGKCPFR-SFCFRRKAADENE-DCSALTNEI--IVTMHTFQDGLETKYMEILRFQASE 389
W + P +F R + C ++ + Q + E + F A E
Sbjct: 779 WCSNRQPLHCAFSLERYTPTTTQLSCKICIRQLKGHEQILQVQTSILESERETITFFAQE 838
Query: 390 EESWAAPPPVSQPPPCNRLPPELFEQLRMLLEPNSITGNDWRGLASHLGLCGMKIRFLSC 449
+ ++ P P ++P + +++ + + G DW+ LA + + + +
Sbjct: 839 DSTF----PAQTGPKAFKIPYSIRQRICATFDTPNAKGKDWQMLAQKNSI-NRNLSYFAT 893
Query: 450 QRSPAAAILELFEEQNGSLQELHYLMTVMERL 481
Q SP+A IL L+E ++ +L L +E +
Sbjct: 894 QSSPSAVILNLWEARHQHDGDLDSLACALEEI 925
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 65.5 bits (158), Expect = 1e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 101 LVFSAREV-DHRGGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQG- 158
+V +AR + + GG L +TG+S++IP GA+ G ++ + + D S P L + +G
Sbjct: 1552 VVATARGIFNSNGGVLSSIETGVSIIIPQGAIPEGVEQEIYFKVCRDNSILPPLDKEKGE 1611
Query: 159 -LVSPVVACGPHGASFLKPCTLTFKHC 184
L+SP+V CGPHG FLKP L HC
Sbjct: 1612 TLLSPLVMCGPHGLKFLKPVELRLPHC 1638
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 65.5 bits (158), Expect = 1e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 101 LVFSAREV-DHRGGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQG- 158
+V +AR + + GG L +TG+S++IP GA+ G ++ + + D S P L + +G
Sbjct: 1632 VVATARGIFNSNGGVLSSIETGVSIIIPQGAIPEGVEQEIYFKVCRDNSILPPLDKEKGE 1691
Query: 159 -LVSPVVACGPHGASFLKPCTLTFKHC 184
L+SP+V CGPHG FLKP L HC
Sbjct: 1692 TLLSPLVMCGPHGLKFLKPVELRLPHC 1718
>gi|215598574 ankyrin 1 isoform 9 [Homo sapiens]
Length = 1897
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP A + L+ LS P L++ +GL S ++A
Sbjct: 960 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIAL 1019
Query: 167 GPHGASFLKPCTLTFKHCAEQPSHAR 192
GP GA FL P + H A SH R
Sbjct: 1020 GPTGAQFLSPVIVEIPHFA---SHGR 1042
>gi|70780359 ankyrin 1 isoform 1 [Homo sapiens]
Length = 1881
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP A + L+ LS P L++ +GL S ++A
Sbjct: 919 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIAL 978
Query: 167 GPHGASFLKPCTLTFKHCAEQPSHAR 192
GP GA FL P + H A SH R
Sbjct: 979 GPTGAQFLSPVIVEIPHFA---SHGR 1001
>gi|70780357 ankyrin 1 isoform 3 [Homo sapiens]
Length = 1880
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP A + L+ LS P L++ +GL S ++A
Sbjct: 919 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIAL 978
Query: 167 GPHGASFLKPCTLTFKHCAEQPSHAR 192
GP GA FL P + H A SH R
Sbjct: 979 GPTGAQFLSPVIVEIPHFA---SHGR 1001
>gi|70780355 ankyrin 1 isoform 2 [Homo sapiens]
Length = 1719
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP A + L+ LS P L++ +GL S ++A
Sbjct: 919 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIAL 978
Query: 167 GPHGASFLKPCTLTFKHCAEQPSHAR 192
GP GA FL P + H A SH R
Sbjct: 979 GPTGAQFLSPVIVEIPHFA---SHGR 1001
>gi|70780353 ankyrin 1 isoform 4 [Homo sapiens]
Length = 1856
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP A + L+ LS P L++ +GL S ++A
Sbjct: 919 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIAL 978
Query: 167 GPHGASFLKPCTLTFKHCAEQPSHAR 192
GP GA FL P + H A SH R
Sbjct: 979 GPTGAQFLSPVIVEIPHFA---SHGR 1001
>gi|32967599 ankyrin 3 isoform 2 [Homo sapiens]
Length = 1001
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP + L+ L++ P + + +GL S +V
Sbjct: 124 VDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEM 183
Query: 167 GPHGASFLKPCTLTFKH 183
GP GA FL P + H
Sbjct: 184 GPAGAQFLGPVIVEIPH 200
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP + L+ L++ P + + +GL S +V
Sbjct: 990 VDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKLANPPPMVEGEGLASRLVEM 1049
Query: 167 GPHGASFLKPCTLTFKH 183
GP GA FL P + H
Sbjct: 1050 GPAGAQFLGPVIVEIPH 1066
>gi|188595682 ankyrin 2 isoform 3 [Homo sapiens]
Length = 1863
Score = 38.5 bits (88), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP + L+ L+ P + + +GL S ++
Sbjct: 965 VDARGGAMRGCRHNGLRIIIPPRKCTAPTRVTCRLVKRHRLATMPPMVEGEGLASRLIEV 1024
Query: 167 GPHGASFL 174
GP GA FL
Sbjct: 1025 GPSGAQFL 1032
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 151 PSLSQAQGLVSPVVACGPHGASFLKPCTLTFKHCA 185
P L++ + LVS ++ GP G FL P + H A
Sbjct: 1042 PPLNEGESLVSRILQLGPPGTKFLGPVIVEIPHFA 1076
>gi|52426737 ankyrin 2 isoform 2 [Homo sapiens]
Length = 1872
Score = 38.5 bits (88), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP + L+ L+ P + + +GL S ++
Sbjct: 974 VDARGGAMRGCRHNGLRIIIPPRKCTAPTRVTCRLVKRHRLATMPPMVEGEGLASRLIEV 1033
Query: 167 GPHGASFL 174
GP GA FL
Sbjct: 1034 GPSGAQFL 1041
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 151 PSLSQAQGLVSPVVACGPHGASFLKPCTLTFKHCA 185
P L++ + LVS ++ GP G FL P + H A
Sbjct: 1051 PPLNEGESLVSRILQLGPPGTKFLGPVIVEIPHFA 1085
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 38.5 bits (88), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 108 VDHRGGCLM-LQDTGISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVAC 166
VD RGG + + G+ ++IPP + L+ L+ P + + +GL S ++
Sbjct: 974 VDARGGAMRGCRHNGLRIIIPPRKCTAPTRVTCRLVKRHRLATMPPMVEGEGLASRLIEV 1033
Query: 167 GPHGASFL 174
GP GA FL
Sbjct: 1034 GPSGAQFL 1041
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 151 PSLSQAQGLVSPVVACGPHGASFLKPCTLTFKHCA 185
P L++ + LVS ++ GP G FL P + H A
Sbjct: 1051 PPLNEGESLVSRILQLGPPGTKFLGPVIVEIPHFA 1085
>gi|157502191 putative binding protein 7a5 [Homo sapiens]
Length = 852
Score = 34.7 bits (78), Expect = 0.22
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 105 AREVDHRGGCLMLQDTGISLLIPPGAVAVGRQERVSL 141
A +V+H+GG + L ++ I++ +P G VAVG + VSL
Sbjct: 215 ACKVNHQGGSVQLPESDITVHVPQGHVAVGEFQEVSL 251
>gi|7657562 SH3-domain binding protein 4 [Homo sapiens]
Length = 963
Score = 34.3 bits (77), Expect = 0.28
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 107 EVDHRGGCLMLQDTGISLLIPPGAVAVGRQERVSLILVWD 146
++D GG + L DT IS+ +P G VA G +++S+ + D
Sbjct: 322 KLDSSGGAVQLPDTSISIHVPEGHVAPGETQQISMKALLD 361
>gi|197276654 myeloid differentiation primary response gene 88 [Homo
sapiens]
Length = 309
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 394 AAPPPVSQPPPCNRLPPELFEQLRMLLEPNSITGNDWRGLASHLGLCGMKIRFLSCQRSP 453
AAP + P L + +L + L + DW LA + ++IR L Q P
Sbjct: 24 AAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADWTALAEEMDFEYLEIRQLETQADP 83
Query: 454 AAAILELFEEQNG-SLQELHYLMTVMERLD 482
+L+ ++ + G S+ L L+T + R D
Sbjct: 84 TGRLLDAWQGRPGASVGRLLELLTKLGRDD 113
>gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]
Length = 719
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 32 RWHCPRRLLGACWTLNGQEEP----VSQPTPQLENEVSRQHLPATLPEMVAFYQELHTPT 87
R H PR+ L + N EP T QLEN +SR T PE A Q HT T
Sbjct: 637 REHRPRKHL-SLRLCNRDPEPGGATEKMKTHQLENGLSRSVSQETEPEREAGLQNTHTHT 695
Query: 88 QGQTMVRQLMHKLLVF 103
T H L +F
Sbjct: 696 HTHTHTHDHQHILSLF 711
>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
Length = 1146
Score = 31.2 bits (69), Expect = 2.4
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 386 QASEEESWAAPPPVSQPPPCNRLPPELFEQLRMLLEPNSITGNDWRGLASHLGLCGMKIR 445
Q + ++ A PPP S P P +R + +E++ L + RGL H +
Sbjct: 299 QGAPKKRKAPPPPASIPMPDDR---DAYEEIVRLRQERGRLLQKIRGLEQH--------K 347
Query: 446 FLSCQRSPAAAILELFEEQNGSLQEL 471
Q SP A+ L + E Q LQ+L
Sbjct: 348 ERRQQESPEASSLHILERQVQELQQL 373
>gi|32699038 sterile alpha motif domain containing 7 [Homo sapiens]
Length = 446
Score = 31.2 bits (69), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 175 KPCTLTFKHCAE-QPSHARTYSSNTTLLDAKVW 206
KP T C E +P+H + + S+TT L AK W
Sbjct: 243 KPTTALANTCGELEPTHRKPWGSHTTTLKAKAW 275
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 30.4 bits (67), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 223 IHLSHFSLYTCVLEAPVGREARKWLQLAVFCSPLVPG 259
+ + H YTC+ +P G ++R + L VF SP + G
Sbjct: 2540 VQVPHTGRYTCLASSPAGHKSRSF-SLNVFVSPTIAG 2575
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 30.4 bits (67), Expect = 4.1
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 361 TNEIIVTMHTFQDGLETKYMEILRFQASEEESWAAPPPVSQPPPCNRLPPELFEQL--RM 418
T+E + H G +K A+EE W+ V + P +LP +
Sbjct: 1039 TSEDVAASHRCDAGSPSKD------SAAEENLWSLVAKVKKKDPREKLPEAMVLAYLEEE 1092
Query: 419 LLEPNSITGNDWR-GLASHLGLCGMKIRFLSCQRS--PAAAILELFEEQNGSLQELHYLM 475
+LE + W AS GL + +RFL C S P+ + +NGSL + +M
Sbjct: 1093 VLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNT-PTENGSLGQSRLMM 1151
Query: 476 TVMERL 481
E+L
Sbjct: 1152 EHFEKL 1157
>gi|61742786 leucine rich repeat and death domain containing protein
isoform 3 [Homo sapiens]
Length = 893
Score = 30.0 bits (66), Expect = 5.3
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 121 GISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHG-ASFLKPCTL 179
G+ ++ PPGA R+ + ++ + L + + VSP++ G SFL+P T+
Sbjct: 475 GVKVIFPPGATEEPRRVSMQVVRMAGRELQALLGEPEAAVSPLLCLSQSGPPSFLQPVTV 534
Query: 180 TFKHCAEQPSHARTYSSNTTLLDAKVWRP 208
PS S + + L W P
Sbjct: 535 QL----PLPSGITGLSLDRSRLHLLYWAP 559
>gi|61742784 leucine rich repeat and death domain containing protein
isoform 1 [Homo sapiens]
Length = 910
Score = 30.0 bits (66), Expect = 5.3
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 121 GISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHG-ASFLKPCTL 179
G+ ++ PPGA R+ + ++ + L + + VSP++ G SFL+P T+
Sbjct: 475 GVKVIFPPGATEEPRRVSMQVVRMAGRELQALLGEPEAAVSPLLCLSQSGPPSFLQPVTV 534
Query: 180 TFKHCAEQPSHARTYSSNTTLLDAKVWRP 208
PS S + + L W P
Sbjct: 535 QL----PLPSGITGLSLDRSRLHLLYWAP 559
>gi|61742782 leucine rich repeat and death domain containing protein
isoform 2 [Homo sapiens]
Length = 753
Score = 30.0 bits (66), Expect = 5.3
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 121 GISLLIPPGAVAVGRQERVSLILVWDLSDAPSLSQAQGLVSPVVACGPHG-ASFLKPCTL 179
G+ ++ PPGA R+ + ++ + L + + VSP++ G SFL+P T+
Sbjct: 329 GVKVIFPPGATEEPRRVSMQVVRMAGRELQALLGEPEAAVSPLLCLSQSGPPSFLQPVTV 388
Query: 180 TFKHCAEQPSHARTYSSNTTLLDAKVWRP 208
PS S + + L W P
Sbjct: 389 QL----PLPSGITGLSLDRSRLHLLYWAP 413
>gi|57634534 nucleoporin 205kDa [Homo sapiens]
Length = 2012
Score = 30.0 bits (66), Expect = 5.3
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 397 PPVSQPPPCNRLPPELFEQLRMLLEPNSITGNDWRGLASHLGLCGMKIRFLSCQRSPAAA 456
PP+ P P +R L L++ +T + +A HL G ++FL A
Sbjct: 1605 PPMFIPTPVDRYRQILLPALQLCQV--ILTSS----MAQHLQAAGQVLQFLISHSDTIQA 1658
Query: 457 ILELFEEQNGSLQELHYLMTVMER 480
IL + GSLQEL L ++ +
Sbjct: 1659 ILRCQDVSAGSLQELALLTGIISK 1682
>gi|148839296 immunoglobulin-like and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 868
Score = 30.0 bits (66), Expect = 5.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 225 LSHFSLYTCVLEAPVGREARKWLQLAVFCSPLVPGQSHLQ 264
LS LYT VL G+E ++ V P PG HLQ
Sbjct: 628 LSDSGLYTVVLRTLQGKEVAHSFRIRVAACPQAPGPIHLQ 667
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,363,032
Number of Sequences: 37866
Number of extensions: 1245253
Number of successful extensions: 4424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4363
Number of HSP's gapped (non-prelim): 61
length of query: 518
length of database: 18,247,518
effective HSP length: 107
effective length of query: 411
effective length of database: 14,195,856
effective search space: 5834496816
effective search space used: 5834496816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.