Guide to the Human Genome
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Name: UNC5CL Sequence: fasta or formatted (518aa) NCBI GI: 27734865
Description:

unc-5 homolog C-like

Referenced in:

Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           3
 C cysteine            4.2         22           1
 D aspartate           3.3         17           2
 E glutamate           6.8         35           3
 F phenylalanine       3.7         19           1
 G glycine             6.9         36           2
 H histidine           3.9         20           1
 I isoleucine          2.7         14           2
 K lysine              2.1         11           1
 L leucine            13.5         70           3
 M methionine          2.1         11           1
 N asparagine          3.1         16           2
 P proline             7.5         39           3
 Q glutamine           6.6         34           1
 R arginine            6.2         32           2
 S serine              7.3         38           2
 T threonine           4.4         23           2
 V valine              5.2         27           2
 W tryptophan          1.9         10           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   unc-5 homolog C-like 
UNC5C                 0.076   unc5C 
UNC5B                 0.072   unc-5 homolog B 
UNC5A                 0.071   netrin receptor Unc5h1 
UNC5D                 0.066   unc-5 homolog D 
TJP1                  0.038   tight junction protein 1 isoform b 
TJP1                  0.038   tight junction protein 1 isoform a 
ANK1                  0.025   ankyrin 1 isoform 9 
ANK1                  0.025   ankyrin 1 isoform 1 
ANK1                  0.025   ankyrin 1 isoform 3 
ANK1                  0.025   ankyrin 1 isoform 2 
ANK1                  0.025   ankyrin 1 isoform 4 
ANK3                  0.015   ankyrin 3 isoform 2 
ANK3                  0.015   ankyrin 3 isoform 1 
ANK2                  0.013   ankyrin 2 isoform 3 
ANK2                  0.013   ankyrin 2 isoform 2 
ANK2                  0.013   ankyrin 2 isoform 1 
MACC1                 0.009   putative binding protein 7a5 
SH3BP4                0.009   SH3-domain binding protein 4 
MYD88                 0.007   myeloid differentiation primary response gene 88 [H...
C10orf71              0.006   hypothetical protein LOC118461 isoform 2 
ANKRD24               0.006   ankyrin repeat domain 24 
SAMD7                 0.006   sterile alpha motif domain containing 7 
HMCN1                 0.005   hemicentin 1 
ZBED4                 0.005   zinc finger, BED-type containing 4 
LRDD                  0.005   leucine rich repeat and death domain containing prot...
LRDD                  0.005   leucine rich repeat and death domain containing prot...
LRDD                  0.005   leucine rich repeat and death domain containing prot...
NUP205                0.005   nucleoporin 205kDa 
IGFN1                 0.005   immunoglobulin-like and fibronectin type III domain...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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