Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: UNC5A Sequence: fasta or formatted (842aa) NCBI GI: 62243567
Description:

netrin receptor Unc5h1

Referenced in:

Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         63           3
 C cysteine            3.2         27           1
 D aspartate           4.4         37           1
 E glutamate           5.7         48           2
 F phenylalanine       3.1         26           2
 G glycine             6.3         53           3
 H histidine           2.9         24           2
 I isoleucine          4.4         37           2
 K lysine              3.9         33           2
 L leucine            12.4        104           4
 M methionine          0.7          6           1
 N asparagine          3.1         26           1
 P proline             7.0         59           2
 Q glutamine           4.0         34           2
 R arginine            5.2         44           3
 S serine              8.7         73           3
 T threonine           5.2         44           5
 V valine              7.5         63           2
 W tryptophan          2.1         18           1
 Y tyrosine            2.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   netrin receptor Unc5h1 
UNC5C                 0.519   unc5C 
UNC5B                 0.474   unc-5 homolog B 
UNC5D                 0.365   unc-5 homolog D 
UNC5CL                0.044   unc-5 homolog C-like 
HMCN1                 0.039   hemicentin 1 
ROBO2                 0.028   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.027   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO1                 0.026   roundabout 1 isoform d 
ROBO1                 0.026   roundabout 1 isoform c 
ROBO1                 0.026   roundabout 1 isoform b 
LOC642132             0.026   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.026   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.026   roundabout 1 isoform a 
ROBO3                 0.024   roundabout, axon guidance receptor, homolog 3 
TJP1                  0.024   tight junction protein 1 isoform b 
TJP1                  0.024   tight junction protein 1 isoform a 
PRTG                  0.022   protogenin 
THBS2                 0.021   thrombospondin 2 precursor 
ROBO4                 0.021   roundabout homolog 4, magic roundabout 
C6                    0.020   complement component 6 precursor 
C6                    0.020   complement component 6 precursor 
BAI1                  0.019   brain-specific angiogenesis inhibitor 1 precursor [...
C8A                   0.019   complement component 8, alpha polypeptide precursor [...
ADAMTS15              0.018   a disintegrin-like and metalloprotease (reprolysin t...
THBS1                 0.018   thrombospondin 1 precursor 
ADAMTS4               0.018   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS3               0.018   ADAM metallopeptidase with thrombospondin type 1 mot...
SEMA5B                0.018   semaphorin 5B isoform 1 
SEMA5A                0.018   semaphorin 5A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press