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Search of human proteins with 27501446
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27501446 density-regulated protein [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27501446 density-regulated protein [Homo sapiens] 405 e-113
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 34 0.093
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|56676330 HP1-BP74 [Homo sapiens] 33 0.16
gi|6005872 SEC63-like protein [Homo sapiens] 32 0.27
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap... 32 0.35
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 31 0.79
gi|21450645 tetratricopeptide repeat domain 16 [Homo sapiens] 31 0.79
gi|5803092 methionyl aminopeptidase 2 [Homo sapiens] 30 1.0
gi|34996489 pleckstrin homology domain interacting protein [Homo... 30 1.3
gi|109637791 transcription factor-like nuclear regulator [Homo s... 30 1.8
gi|42718020 retinitis pigmentosa 9 [Homo sapiens] 30 1.8
gi|67010013 zinc finger protein 688 isoform b [Homo sapiens] 30 1.8
gi|63497679 hypothetical protein LOC128061 [Homo sapiens] 30 1.8
gi|46852174 kinesin family member 3A [Homo sapiens] 29 2.3
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 29 2.3
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 29 3.0
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H... 29 3.0
gi|221219020 NYD-SP11 protein [Homo sapiens] 29 3.0
gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens] 29 3.0
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 28 3.9
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 28 3.9
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 28 3.9
gi|170784817 transcription factor CP2-like 3 [Homo sapiens] 28 3.9
gi|101943240 general transcription factor IIIC, polypeptide 1, a... 28 3.9
gi|23957698 luman-recruiting factor [Homo sapiens] 28 3.9
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 28 3.9
gi|50845407 chromosome 22 open reading frame 13 [Homo sapiens] 28 3.9
gi|21735415 centromere protein B [Homo sapiens] 28 5.1
>gi|27501446 density-regulated protein [Homo sapiens]
Length = 198
Score = 405 bits (1041), Expect = e-113
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN 60
MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN
Sbjct: 1 MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN 60
Query: 61 FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI 120
FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI
Sbjct: 61 FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI 120
Query: 121 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE 180
PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE
Sbjct: 121 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE 180
Query: 181 KWPEVDDDSIEDLGEVKK 198
KWPEVDDDSIEDLGEVKK
Sbjct: 181 KWPEVDDDSIEDLGEVKK 198
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 33.9 bits (76), Expect = 0.093
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 77 EAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKK 126
E G+ EG G EEEE +++++ +G + K VP+K ++ + KK+
Sbjct: 410 EEGLKEGDGEEEEEEEVEEEEQEAQGGVSGSLKGVPKKSKMSLKQKIKKE 459
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.5 bits (75), Expect = 0.12
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 52 KCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTV 111
K + ++K K T + K+ + T +E+EK+K+K + + K+K+K
Sbjct: 37 KKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEK 96
Query: 112 PQKVTIAKIPRAKKKYV-TRVCGL 134
+K K + KKK + +VCGL
Sbjct: 97 EKKKKKKKKKKKKKKKLNAKVCGL 120
>gi|56676330 HP1-BP74 [Homo sapiens]
Length = 553
Score = 33.1 bits (74), Expect = 0.16
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 74 PKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTI--AKIPRAKKKYVTRV 131
PK E E + EE KK +K + + K+ KKT+P T+ +++ RA+K+
Sbjct: 96 PKGEPENEEKEENKSSEETKKDEKDQSKEKEKKVKKTIPSWATLSASQLARAQKQTPMAS 155
Query: 132 CGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIII 166
+ L EA + QK GASV + II
Sbjct: 156 SPRPKMDAILTEAIKACFQK--SGASVVAIRKYII 188
>gi|6005872 SEC63-like protein [Homo sapiens]
Length = 760
Score = 32.3 bits (72), Expect = 0.27
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 54 RQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIK----QKKK 109
RQ + + F E + E P ++ GQG + K ++ +G K +KKK
Sbjct: 476 RQTMAEVFEKEQSICAAEEQPAED-----GQGETNKNRTKGGWQQKSKGPKKTAKSKKKK 530
Query: 110 TVPQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFS-CGASVTGEDEIIIQG 168
+ +K T +P++K++ + G+ E +KE + + K S T D +
Sbjct: 531 PLKKKPTPVLLPQSKQQKQKQANGVVGNEAAVKEDEEEVSDKGSDSEEEETNRDSQSEKD 590
Query: 169 DFTDDIIDVIQEKWPEVDDDS 189
D +D D Q++ DD++
Sbjct: 591 DGSDRDSDREQDEKQNKDDEA 611
>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sapiens]
Length = 1827
Score = 32.0 bits (71), Expect = 0.35
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 70 VENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQK--VTIAKIPRAKKKY 127
+E PK+E E + ++ E+ K+K + GRG+I ++ V +K T+++ +KK
Sbjct: 1404 LETIPKEEKAEKEARRSSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKA 1463
Query: 128 VTRVCGLA 135
V + LA
Sbjct: 1464 VYKKAELA 1471
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 30.8 bits (68), Expect = 0.79
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 49 DVAKCRQWLEKNFPNEFAKLTVENSPKQEAGI-------------SEGQGTAGEEEEKKK 95
+ K Q +K +F + TV++ + G+ +E ++++ KK
Sbjct: 260 ETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKK 319
Query: 96 QKRGGRGQIKQKKKTVPQKVTI-------AKI----PRAKKKYVTRVCGLATFEIDLKEA 144
+K+G + + +++KK P K T+ AK+ R K++ R+ L E KE
Sbjct: 320 KKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEE 379
Query: 145 QRFFAQK 151
+R +K
Sbjct: 380 ERLEQEK 386
>gi|21450645 tetratricopeptide repeat domain 16 [Homo sapiens]
Length = 873
Score = 30.8 bits (68), Expect = 0.79
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 74 PKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKV 115
P+ + G SEG+ A EEEE+K++++ + ++K + +P KV
Sbjct: 562 PQVKPGSSEGEAEAPEEEEEKEKEK----KEEKKSELIPSKV 599
>gi|5803092 methionyl aminopeptidase 2 [Homo sapiens]
Length = 478
Score = 30.4 bits (67), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 71 ENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQ 103
E E G +G G G++++KKK+KRG + Q
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 30.0 bits (66), Expect = 1.3
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 74 PKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCG 133
PK + +E EE EK+KQK QIK++KK V ++ P+ KK +
Sbjct: 870 PKNKTKKAESSSDEEEESEKQKQK-----QIKKEKKKVNEEKDGPISPKKKKPKERKQKR 924
Query: 134 LATFEI 139
LA E+
Sbjct: 925 LAVGEL 930
>gi|109637791 transcription factor-like nuclear regulator [Homo
sapiens]
Length = 2624
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 90 EEEKKKQKRGGRGQIKQKKKTVPQK-VTIAKI 120
EEEK+KQK +K+KK T P+K V + K+
Sbjct: 377 EEEKRKQKSVKNHSLKEKKSTKPRKNVKVKKV 408
>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
Length = 221
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 47 MPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQ 106
M D+ + + EK+ + K +E+S E S E+ +KKK+K + + K+
Sbjct: 141 MYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRKKE 200
Query: 107 KKKTVPQK 114
KKK +K
Sbjct: 201 KKKKKKRK 208
>gi|67010013 zinc finger protein 688 isoform b [Homo sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 48 PDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGR-GQIKQ 106
P + +C +++ FP K + + +QE SE A ++ EK ++ G R G +
Sbjct: 40 PIIGRCVLRVQRGFPGP--KPALISWMEQE---SEAWSPAAQDPEKGERLGGARRGDVPN 94
Query: 107 KKKTVPQKVTIAKIPR 122
+K+ P++V AK PR
Sbjct: 95 RKEEEPEEVPRAKGPR 110
>gi|63497679 hypothetical protein LOC128061 [Homo sapiens]
Length = 293
Score = 29.6 bits (65), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 67 KLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKK 125
K+ E +++A E + A E + KK+KR G+ K KKK+ P ++ +I + K
Sbjct: 212 KVLQEQIKEKKAAKEEEKRLAQETDIFKKKKRKGQEDRKSKKKSAPSILSNGRIGQVGK 270
>gi|46852174 kinesin family member 3A [Homo sapiens]
Length = 699
Score = 29.3 bits (64), Expect = 2.3
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 17/65 (26%)
Query: 84 QGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKV--TIAKIPRAKKKYVTRVCGLATFEIDL 141
+G GE+ EK+K++RG KKK P K+ AKI +K T+ +D+
Sbjct: 395 EGEVGEDGEKRKKRRG-------KKKVSPDKMIEMQAKIDEERKALETK--------LDM 439
Query: 142 KEAQR 146
+E +R
Sbjct: 440 EEEER 444
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 29.3 bits (64), Expect = 2.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 77 EAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAK 119
E + E +G GE ++ K K+ + ++K +KK+ P + + +K
Sbjct: 608 EKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSK 650
Score = 27.7 bits (60), Expect = 6.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 78 AGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKK 126
A S +G + +E+K+KQ + + +K + P +V K P A K+
Sbjct: 501 ASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKR 549
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 58 EKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTI 117
E+ P A V NS ++ EE++KKK+++ + K + K P+K
Sbjct: 149 EQYLPGAIALFNVNNSSNKDQ--------EPEEKKKKKKEKKSKSDDKNENKNDPEKKKK 200
Query: 118 AKIPRAKKK 126
K KKK
Sbjct: 201 KKDKEKKKK 209
>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
sapiens]
Length = 690
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 58 EKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTI 117
E+ P A V NS ++ EE++KKK+++ + K + K P+K
Sbjct: 80 EQYLPGAIALFNVNNSSNKDQ--------EPEEKKKKKKEKKSKSDDKNENKNDPEKKKK 131
Query: 118 AKIPRAKKK 126
K KKK
Sbjct: 132 KKDKEKKKK 140
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 28.9 bits (63), Expect = 3.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 71 ENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTI 117
E K+E E Q EEE+KKK+K + ++++K++ +K I
Sbjct: 2266 EEERKEEEEGEEKQVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKEEI 2312
Score = 28.5 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 80 ISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKK 126
+ G T G+E KK++K+ + KQ +K V ++ + KI R K
Sbjct: 1376 LEPGNVTMGKEISKKEEKKTFQKSPKQGRKAVQKERKVGKIKREMTK 1422
>gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]
Length = 529
Score = 28.9 bits (63), Expect = 3.0
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 66 AKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKK 125
AK+ V+ ++E ++E + T+ KKK+KRG + IK++ + + T I +K
Sbjct: 462 AKIKVKVEEEEEEKVAEEEETS----VKKKKKRGKKKHIKEEPLSEEEPCTSTAIASPEK 517
Query: 126 K 126
K
Sbjct: 518 K 518
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 28.5 bits (62), Expect = 3.9
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 79 GISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKK 126
G+ + + +E+EKKK+K+ + + K+KKK +K K R +K+
Sbjct: 98 GLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKR 145
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 28.5 bits (62), Expect = 3.9
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 16 DPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCR-QWLEKNFPN-----EFAKLT 69
DP S +LD+D+ + C + + + D + L ++ PN E L
Sbjct: 7 DPTGS-QLDSDFSQQDTPCLIIEDSQPESQVLEDDSGSHFSMLSRHLPNLQTHKENPVLD 65
Query: 70 VENSPKQEAGISEGQGTAGEEEEKKKQK 97
V ++P+Q AG G G +G E K+ K
Sbjct: 66 VVSNPEQTAGEERGDGNSGFNEHLKENK 93
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 28.5 bits (62), Expect = 3.9
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 16 DPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCR-QWLEKNFPN-----EFAKLT 69
DP S +LD+D+ + C + + + D + L ++ PN E L
Sbjct: 7 DPTGS-QLDSDFSQQDTPCLIIEDSQPESQVLEDDSGSHFSMLSRHLPNLQTHKENPVLD 65
Query: 70 VENSPKQEAGISEGQGTAGEEEEKKKQK 97
V ++P+Q AG G G +G E K+ K
Sbjct: 66 VVSNPEQTAGEERGDGNSGFNEHLKENK 93
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 28.5 bits (62), Expect = 3.9
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 16 DPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCR-QWLEKNFPN-----EFAKLT 69
DP S +LD+D+ + C + + + D + L ++ PN E L
Sbjct: 2 DPTGS-QLDSDFSQQDTPCLIIEDSQPESQVLEDDSGSHFSMLSRHLPNLQTHKENPVLD 60
Query: 70 VENSPKQEAGISEGQGTAGEEEEKKKQK 97
V ++P+Q AG G G +G E K+ K
Sbjct: 61 VVSNPEQTAGEERGDGNSGFNEHLKENK 88
>gi|170784817 transcription factor CP2-like 3 [Homo sapiens]
Length = 625
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 90 EEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVT 129
+EE+K+ ++ G+GQ Q + +A IP KK +T
Sbjct: 427 DEERKQNRKKGKGQASQTQCNSSSDGKLAAIPLQKKSDIT 466
>gi|101943240 general transcription factor IIIC, polypeptide 1,
alpha 220kDa [Homo sapiens]
Length = 2109
Score = 28.5 bits (62), Expect = 3.9
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 44 CEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGT----AGEEEEKKKQKRG 99
C + + RQ+ + +E S ++E+ + EG+ T + EEE+ KR
Sbjct: 431 CVFAEESDLSRQYQREKARSELLTTVSLASMQEESLLPEGEDTFLSESDSEEERSSSKRR 490
Query: 100 GRGQIKQ-------KKKTVPQKVTIAK 119
GRG K + KT P T K
Sbjct: 491 GRGSQKDTRASANLRPKTQPHHSTPTK 517
>gi|23957698 luman-recruiting factor [Homo sapiens]
Length = 639
Score = 28.5 bits (62), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 161 EDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEV 196
E+E + D DDI D E P ++DS+EDL EV
Sbjct: 387 EEEEDYEDDKDDDISDTFSE--PGYENDSVEDLKEV 420
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 91 EEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCGL-ATFEIDLKEAQRFFA 149
E+KK+Q+ RGQI+++K + T+ + + V + G FE LKEA+
Sbjct: 478 EDKKRQEEELRGQIREEKARTRELETLQQTVEELQAQVHSMDGAKGWFERRLKEAEESLQ 537
Query: 150 QK 151
Q+
Sbjct: 538 QQ 539
>gi|50845407 chromosome 22 open reading frame 13 [Homo sapiens]
Length = 240
Score = 28.5 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 31 VLYCGVCSLPTEYCEYMPDVAKC 53
VL+C +CS P +YC + P C
Sbjct: 154 VLHCDLCSSPVKYCCFTPSGHHC 176
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 71 ENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQK 114
E ++E EG+G EEE +++++ GG G+ +++ V ++
Sbjct: 408 EEEEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVEEE 451
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,139,389
Number of Sequences: 37866
Number of extensions: 386909
Number of successful extensions: 1843
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1726
Number of HSP's gapped (non-prelim): 118
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.