Guide to the Human Genome
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Name: C1orf131 Sequence: fasta or formatted (293aa) NCBI GI: 63497679
Description:

hypothetical protein LOC128061

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         21           3
 C cysteine            0.3          1           1
 D aspartate           3.8         11           1
 E glutamate           9.2         27           3
 F phenylalanine       2.7          8           2
 G glycine             6.5         19           2
 H histidine           1.4          4           1
 I isoleucine          4.8         14           2
 K lysine             13.7         40           4
 L leucine             7.5         22           2
 M methionine          1.4          4           1
 N asparagine          4.4         13           2
 P proline             6.5         19           2
 Q glutamine           4.8         14           1
 R arginine            6.5         19           1
 S serine              8.9         26           2
 T threonine           4.4         13           1
 V valine              4.8         14           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC128061 
CCDC91                0.045   GGA binding partner 
FAM133A               0.035   hypothetical protein LOC286499 
FAM133B               0.031   hypothetical protein LOC257415 isoform 2 
FAM133B               0.031   hypothetical protein LOC257415 isoform 1 
AP3D1                 0.027   adaptor-related protein complex 3, delta 1 subunit ...
CTR9                  0.027   SH2 domain binding protein 1 
BAT2D1                0.027   HBxAg transactivated protein 2 
KIF3B                 0.025   kinesin family member 3B 
INO80                 0.025   INO80 complex homolog 1 
TRDN                  0.024   triadin 
LOC100133599          0.024   PREDICTED: hypothetical protein 
CCDC18                0.024   sarcoma antigen NY-SAR-41 
LOC100133599          0.022   PREDICTED: hypothetical protein 
RNF20                 0.022   ring finger protein 20 
LOC283685             0.022   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133698          0.022   PREDICTED: hypothetical protein 
CHAF1A                0.022   chromatin assembly factor 1, subunit A (p150) 
FYB                   0.020   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.020   FYN binding protein (FYB-120/130) isoform 1 
LRRIQ1                0.020   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.020   leucine-rich repeats and IQ motif containing 1 isof...
LOC100294088          0.018   PREDICTED: hypothetical protein, partial 
ITSN1                 0.018   intersectin 1 isoform ITSN-s 
ITSN1                 0.018   intersectin 1 isoform ITSN-l 
CCDC80                0.018   steroid-sensitive protein 1 
CCDC80                0.018   steroid-sensitive protein 1 
WDR87                 0.018   NYD-SP11 protein 
DIDO1                 0.018   death inducer-obliterator 1 isoform c 
DIDO1                 0.018   death inducer-obliterator 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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