Guide to the Human Genome
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Name: DENR Sequence: fasta or formatted (198aa) NCBI GI: 27501446
Description:

density-regulated protein

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         15           2
 C cysteine            3.5          7           1
 D aspartate           8.1         16           3
 E glutamate          10.1         20           4
 F phenylalanine       3.5          7           2
 G glycine             7.6         15           2
 H histidine           0.0          0           0
 I isoleucine          6.6         13           3
 K lysine             12.1         24           3
 L leucine             4.5          9           1
 M methionine          1.0          2           1
 N asparagine          2.0          4           1
 P proline             4.5          9           1
 Q glutamine           5.6         11           1
 R arginine            4.0          8           1
 S serine              5.1         10           2
 T threonine           4.5          9           1
 V valine              6.1         12           1
 W tryptophan          1.0          2           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   density-regulated protein 
BRPF3                 0.024   bromodomain and PHD finger containing, 3 
LOC100133698          0.021   PREDICTED: hypothetical protein 
HP1BP3                0.021   HP1-BP74 
SEC63                 0.018   SEC63-like protein 
MAP2                  0.018   microtubule-associated protein 2 isoform 1 
EIF5B                 0.016   eukaryotic translation initiation factor 5B 
TTC16                 0.016   tetratricopeptide repeat domain 16 
METAP2                0.013   methionyl aminopeptidase 2 
PHIP                  0.013   pleckstrin homology domain interacting protein [Homo...
BDP1                  0.013   transcription factor-like nuclear regulator 
RP9                   0.013   retinitis pigmentosa 9 
ZNF688                0.013   zinc finger protein 688 isoform b 
C1orf131              0.013   hypothetical protein LOC128061 
KIF3A                 0.011   kinesin family member 3A 
SSRP1                 0.011   structure specific recognition protein 1 
CNGA1                 0.011   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.011   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
WDR87                 0.011   NYD-SP11 protein 
NOP58                 0.011   NOP58 ribonucleoprotein homolog 
LOC100294364          0.008   PREDICTED: hypothetical protein 
TP53BP1               0.008   tumor protein p53 binding protein 1 isoform 1 [Homo...
TP53BP1               0.008   tumor protein p53 binding protein 1 isoform 2 [Homo...
TP53BP1               0.008   tumor protein p53 binding protein 1 isoform 3 
GRHL2                 0.008   transcription factor CP2-like 3 
GTF3C1                0.008   general transcription factor IIIC, polypeptide 1, a...
C5orf41               0.008   luman-recruiting factor 
GRIPAP1               0.008   GRIP1 associated protein 1 isoform 1 
C22orf13              0.008   chromosome 22 open reading frame 13 
CENPB                 0.008   centromere protein B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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