Guide to the Human Genome
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Name: GRHL2 Sequence: fasta or formatted (625aa) NCBI GI: 170784817
Description:

transcription factor CP2-like 3

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         36           3
 C cysteine            1.0          6           1
 D aspartate           6.4         40           2
 E glutamate           7.8         49           3
 F phenylalanine       3.8         24           1
 G glycine             4.8         30           2
 H histidine           1.6         10           1
 I isoleucine          4.6         29           2
 K lysine              8.5         53           2
 L leucine             6.7         42           2
 M methionine          3.0         19           2
 N asparagine          4.8         30           2
 P proline             4.5         28           2
 Q glutamine           5.0         31           1
 R arginine            4.8         30           2
 S serine              9.1         57           3
 T threonine           5.8         36           1
 V valine              6.7         42           2
 W tryptophan          0.6          4           1
 Y tyrosine            4.6         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor CP2-like 3 
GRHL1                 0.527   grainyhead-like 1 
GRHL3                 0.382   sister-of-mammalian grainyhead protein isoform 2 [Ho...
GRHL3                 0.382   sister-of-mammalian grainyhead protein isoform 1 [Ho...
GRHL3                 0.313   sister-of-mammalian grainyhead protein isoform 3 [Ho...
UBP1                  0.063   upstream binding protein 1 (LBP-1a) isoform b [Homo...
TFCP2L1               0.061   LBP-9 
UBP1                  0.059   upstream binding protein 1 (LBP-1a) isoform a [Homo...
UBP1                  0.059   upstream binding protein 1 (LBP-1a) isoform a [Homo...
TFCP2                 0.057   transcription factor CP2 
EML4                  0.007   echinoderm microtubule associated protein like 4 is...
EML4                  0.007   echinoderm microtubule associated protein like 4 iso...
NXN                   0.007   nucleoredoxin 
DGKK                  0.007   diacylglycerol kinase kappa 
MX1                   0.005   myxovirus resistance protein 1 
MX1                   0.005   myxovirus resistance protein 1 
DNAJC16               0.005   DnaJ (Hsp40) homolog, subfamily C, member 16 
LOC100128893          0.004   PREDICTED: hypothetical protein LOC100128893 
LOC100128893          0.004   PREDICTED: hypothetical protein LOC100128893 
LOC100128893          0.004   PREDICTED: hypothetical protein LOC100128893 
ESCO1                 0.004   establishment of cohesion 1 homolog 1 
BRD3                  0.004   bromodomain containing protein 3 
SACS                  0.004   sacsin 
NEB                   0.004   nebulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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