Guide to the Human Genome
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Name: SEC63 Sequence: fasta or formatted (760aa) NCBI GI: 6005872
Description:

SEC63-like protein

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         41           2
 C cysteine            0.9          7           1
 D aspartate           6.4         49           3
 E glutamate          10.0         76           8
 F phenylalanine       3.2         24           2
 G glycine             4.3         33           2
 H histidine           1.3         10           1
 I isoleucine          5.0         38           2
 K lysine              8.8         67           4
 L leucine             9.7         74           3
 M methionine          2.5         19           1
 N asparagine          3.8         29           2
 P proline             5.3         40           2
 Q glutamine           6.4         49           2
 R arginine            4.6         35           2
 S serine              5.8         44           1
 T threonine           4.7         36           2
 V valine              5.9         45           3
 W tryptophan          1.7         13           3
 Y tyrosine            4.1         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SEC63-like protein 
SNRNP200              0.032   activating signal cointegrator 1 complex subunit 3-l...
LOC100293655          0.029   PREDICTED: similar to SNRNP200 protein 
LOC652147             0.028   PREDICTED: similar to U5 snRNP-specific 200kD prote...
DNAJB12               0.025   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJB12               0.025   DnaJ (Hsp40) homolog, subfamily B, member 12 
DNAJC16               0.024   DnaJ (Hsp40) homolog, subfamily C, member 16 
LOC100289243          0.023   PREDICTED: hypothetical protein XP_002343618 
DNAJC8                0.022   DnaJ (Hsp40) homolog, subfamily C, member 8 
DNAJA1                0.021   DnaJ (Hsp40) homolog, subfamily A, member 1 
DNAJC5                0.021   DnaJ (Hsp40) homolog, subfamily C, member 5 
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform a ...
DNAJA4                0.021   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJA4                0.021   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJB5                0.021   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.021   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJC5B               0.021   DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho...
DNAJB5                0.020   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform ...
ASCC3                 0.020   activating signal cointegrator 1 complex subunit 3 i...
EIF5B                 0.020   eukaryotic translation initiation factor 5B 
DNAJB14               0.019   DnaJ (Hsp40) homolog, subfamily B, member 14 isoform...
DNAJA3                0.019   DnaJ (Hsp40) homolog, subfamily A, member 3 isoform...
DNAJA3                0.019   DnaJ (Hsp40) homolog, subfamily A, member 3 isoform...
DNAJB1                0.019   DnaJ (Hsp40) homolog, subfamily B, member 1 
ESF1                  0.019   ABT1-associated protein 
DNAJC18               0.018   DnaJ (Hsp40) homolog, subfamily C, member 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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