Guide to the Human Genome
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Name: KCNAB3 Sequence: fasta or formatted (404aa) NCBI GI: 27436971
Description:

potassium voltage-gated channel, shaker-related subfamily, beta member 3

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         32           2
 C cysteine            2.2          9           1
 D aspartate           3.0         12           1
 E glutamate           6.4         26           2
 F phenylalanine       1.5          6           1
 G glycine            12.4         50           4
 H histidine           2.2          9           2
 I isoleucine          4.5         18           2
 K lysine              5.0         20           2
 L leucine             9.9         40           2
 M methionine          2.2          9           1
 N asparagine          2.7         11           1
 P proline             5.2         21           2
 Q glutamine           5.0         20           2
 R arginine            6.2         25           2
 S serine              7.2         29           2
 T threonine           5.0         20           2
 V valine              6.7         27           1
 W tryptophan          2.0          8           1
 Y tyrosine            3.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, shaker-related subf... 
KCNAB1                0.656   potassium voltage-gated channel, shaker-related subf...
KCNAB1                0.626   potassium voltage-gated channel, shaker-related subf...
KCNAB2                0.620   potassium voltage-gated channel, shaker-related subf...
KCNAB1                0.619   potassium voltage-gated channel, shaker-related subf...
KCNAB2                0.614   potassium voltage-gated channel, shaker-related subfa...
AKR7L                 0.066   aflatoxin B1 aldehyde reductase 3 isoform 1 
AKR7A2                0.065   aldo-keto reductase family 7, member A2 
AKR7A3                0.056   aldo-keto reductase family 7, member A3 
AKR7L                 0.036   aflatoxin B1 aldehyde reductase 3 isoform 2 
ARID1B                0.029   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.029   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.029   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
POU4F1                0.024   POU domain, class 4, transcription factor 1 
AR                    0.021   androgen receptor isoform 1 
SHOX2                 0.021   short stature homeobox 2 isoform a 
C6orf174              0.019   hypothetical protein LOC387104 
KHSRP                 0.019   KH-type splicing regulatory protein 
PPP1R10               0.018   protein phosphatase 1, regulatory subunit 10 
LOC339192             0.018   PREDICTED: hypothetical protein 
LOC339192             0.018   PREDICTED: hypothetical protein 
LOC339192             0.018   PREDICTED: hypothetical protein 
HOXD9                 0.018   homeobox D9 
ZSWIM6                0.018   zinc finger, SWIM-type containing 6 
CTAG2                 0.016   cancer/testis antigen 2 isoform LAGE-1a 
CTAG2                 0.016   cancer/testis antigen 2 isoform LAGE-1b 
DHX36                 0.016   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.016   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
FZD8                  0.016   frizzled 8 
MAFA                  0.016   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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