Guide to the Human Genome
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Name: KCNAB1 Sequence: fasta or formatted (408aa) NCBI GI: 27436962
Description:

potassium voltage-gated channel, shaker-related subfamily, beta member 1 isoform 2

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [401aa] potassium voltage-gated channel, shaker-related subfamily, beta m...
alt prot [419aa] potassium voltage-gated channel, shaker-related subfamily, beta m...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         31           2
 C cysteine            2.2          9           1
 D aspartate           2.0          8           1
 E glutamate           7.8         32           2
 F phenylalanine       1.5          6           1
 G glycine             7.8         32           2
 H histidine           2.0          8           1
 I isoleucine          5.6         23           2
 K lysine              7.1         29           3
 L leucine             9.6         39           2
 M methionine          2.9         12           1
 N asparagine          3.2         13           1
 P proline             4.7         19           2
 Q glutamine           4.4         18           2
 R arginine            5.9         24           2
 S serine              8.1         33           2
 T threonine           4.7         19           2
 V valine              7.1         29           2
 W tryptophan          2.2          9           1
 Y tyrosine            3.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, shaker-related subf... 
KCNAB1                0.821   potassium voltage-gated channel, shaker-related subf...
KCNAB1                0.812   potassium voltage-gated channel, shaker-related subf...
KCNAB2                0.709   potassium voltage-gated channel, shaker-related subf...
KCNAB2                0.702   potassium voltage-gated channel, shaker-related subfa...
KCNAB3                0.628   potassium voltage-gated channel, shaker-related subf...
AKR7L                 0.074   aflatoxin B1 aldehyde reductase 3 isoform 1 
AKR7A3                0.070   aldo-keto reductase family 7, member A3 
AKR7A2                0.069   aldo-keto reductase family 7, member A2 
AKR7L                 0.045   aflatoxin B1 aldehyde reductase 3 isoform 2 
AKR1B1                0.025   aldo-keto reductase family 1, member B1 
AKR1A1                0.024   aldo-keto reductase family 1, member A1 
AKR1A1                0.024   aldo-keto reductase family 1, member A1 
AKR1C2                0.021   aldo-keto reductase family 1, member C2 
AKR1C2                0.021   aldo-keto reductase family 1, member C2 
AKR1C1                0.018   aldo-keto reductase family 1, member C1 
AKR1C3                0.018   aldo-keto reductase family 1, member C3 
AKR1B10L              0.015   aldo-keto reductase family 1, member B10-like [Homo...
LOC100134257          0.013   hypothetical protein LOC100134257 
AKR1C4                0.010   aldo-keto reductase family 1, member C4 
C19orf29              0.008   chromosome 19 open reading frame 29 
C19orf29              0.008   chromosome 19 open reading frame 29 
LIMCH1                0.005   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.005   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.005   LIM and calponin homology domains 1 isoform c [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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