Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCNAB1 Sequence: fasta or formatted (419aa) NCBI GI: 27436966
Description:

potassium voltage-gated channel, shaker-related subfamily, beta member 1 isoform 1

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [408aa] potassium voltage-gated channel, shaker-related subfamily, beta m...
alt prot [401aa] potassium voltage-gated channel, shaker-related subfamily, beta m...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         30           2
 C cysteine            1.9          8           1
 D aspartate           2.4         10           1
 E glutamate           8.1         34           2
 F phenylalanine       1.4          6           1
 G glycine             8.1         34           2
 H histidine           1.7          7           1
 I isoleucine          5.3         22           2
 K lysine              6.7         28           3
 L leucine            10.0         42           2
 M methionine          3.1         13           1
 N asparagine          3.8         16           1
 P proline             3.6         15           2
 Q glutamine           4.3         18           2
 R arginine            6.2         26           2
 S serine              9.5         40           2
 T threonine           4.8         20           2
 V valine              6.7         28           2
 W tryptophan          2.1          9           1
 Y tyrosine            3.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, shaker-related subf... 
KCNAB1                0.798   potassium voltage-gated channel, shaker-related subf...
KCNAB1                0.797   potassium voltage-gated channel, shaker-related subf...
KCNAB2                0.692   potassium voltage-gated channel, shaker-related subf...
KCNAB2                0.687   potassium voltage-gated channel, shaker-related subfa...
KCNAB3                0.610   potassium voltage-gated channel, shaker-related subf...
AKR7L                 0.073   aflatoxin B1 aldehyde reductase 3 isoform 1 
AKR7A3                0.069   aldo-keto reductase family 7, member A3 
AKR7A2                0.068   aldo-keto reductase family 7, member A2 
AKR7L                 0.044   aflatoxin B1 aldehyde reductase 3 isoform 2 
AKR1A1                0.023   aldo-keto reductase family 1, member A1 
AKR1A1                0.023   aldo-keto reductase family 1, member A1 
AKR1B1                0.023   aldo-keto reductase family 1, member B1 
AKR1C2                0.021   aldo-keto reductase family 1, member C2 
AKR1C2                0.021   aldo-keto reductase family 1, member C2 
AKR1C1                0.017   aldo-keto reductase family 1, member C1 
AKR1C3                0.017   aldo-keto reductase family 1, member C3 
AKR1B10L              0.015   aldo-keto reductase family 1, member B10-like [Homo...
LOC100134257          0.012   hypothetical protein LOC100134257 
AKR1C4                0.010   aldo-keto reductase family 1, member C4 
NAV3                  0.009   neuron navigator 3 
CEBPZ                 0.007   CCAAT/enhancer binding protein zeta 
C19orf29              0.007   chromosome 19 open reading frame 29 
C19orf29              0.007   chromosome 19 open reading frame 29 
FLG                   0.005   filaggrin 
AKR1D1                0.005   aldo-keto reductase family 1, member D1 
PPFIA3                0.005   PTPRF interacting protein alpha 3 
LIMCH1                0.005   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.005   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.005   LIM and calponin homology domains 1 isoform c [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press