Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27436869
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436869 small proline-rich protein 4 [Homo sapiens]
(79 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436869 small proline-rich protein 4 [Homo sapiens] 172 7e-44
gi|83582815 small proline-rich protein 1B [Homo sapiens] 74 3e-14
gi|45827734 small proline-rich protein 1A [Homo sapiens] 73 4e-14
gi|62945419 small proline-rich protein 2F [Homo sapiens] 58 2e-09
gi|83582817 small proline-rich protein 2E [Homo sapiens] 58 2e-09
gi|62122851 small proline-rich protein 2G [Homo sapiens] 55 2e-08
gi|56699492 small proline-rich protein 2D [Homo sapiens] 54 4e-08
gi|5174693 small proline-rich protein 2A [Homo sapiens] 52 1e-07
gi|148229144 small proline-rich protein 3 [Homo sapiens] 52 1e-07
gi|4885607 small proline-rich protein 3 [Homo sapiens] 52 1e-07
gi|62955831 small proline-rich protein 2B [Homo sapiens] 52 1e-07
gi|90903231 huntingtin [Homo sapiens] 44 4e-05
gi|30410045 late cornified envelope 2A [Homo sapiens] 44 4e-05
gi|30410035 late cornified envelope 5A [Homo sapiens] 44 4e-05
gi|30410047 late cornified envelope 2C [Homo sapiens] 40 3e-04
gi|30387656 late cornified envelope 1B [Homo sapiens] 40 4e-04
gi|30410043 late cornified envelope 2D [Homo sapiens] 40 5e-04
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens] 39 7e-04
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens] 39 7e-04
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 39 7e-04
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 39 9e-04
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 39 9e-04
gi|7657685 late cornified envelope 2B [Homo sapiens] 39 9e-04
gi|110347429 mediator complex subunit 12 [Homo sapiens] 39 0.001
gi|58082087 late cornified envelope-like proline-rich 1 [Homo sa... 38 0.002
gi|171543895 ataxin 2 [Homo sapiens] 37 0.003
gi|30387648 late cornified envelope 1D [Homo sapiens] 37 0.003
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 37 0.003
gi|8923842 forkhead box J2 [Homo sapiens] 37 0.004
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 36 0.006
>gi|27436869 small proline-rich protein 4 [Homo sapiens]
Length = 79
Score = 172 bits (435), Expect = 7e-44
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTI 60
MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTI
Sbjct: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTI 60
Query: 61 IPAQQKCPSAQQASKSKQK 79
IPAQQKCPSAQQASKSKQK
Sbjct: 61 IPAQQKCPSAQQASKSKQK 79
>gi|83582815 small proline-rich protein 1B [Homo sapiens]
Length = 89
Score = 73.9 bits (180), Expect = 3e-14
Identities = 41/69 (59%), Positives = 46/69 (66%), Gaps = 8/69 (11%)
Query: 1 MSSQQQQRQQQQC-PPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGT 59
MSSQQQ+ Q C PP + QQQQVKQPCQPPP QE C PKTK+PC P+V + C PK
Sbjct: 1 MSSQQQK---QPCTPPPQLQQQQVKQPCQPPP---QEPCIPKTKEPCHPKVPEPCHPK-V 53
Query: 60 IIPAQQKCP 68
P Q K P
Sbjct: 54 PEPCQPKVP 62
>gi|45827734 small proline-rich protein 1A [Homo sapiens]
Length = 89
Score = 73.2 bits (178), Expect = 4e-14
Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 7 QRQQQQC-PPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPAQQ 65
Q+Q+Q C PP + QQQQVKQPCQPPP QE C PKTK+PC P+V + C PK P Q
Sbjct: 4 QQQKQPCTPPPQPQQQQVKQPCQPPP---QEPCIPKTKEPCHPKVPEPCHPK-VPEPCQP 59
Query: 66 KCPSAQQ 72
K P Q
Sbjct: 60 KVPEPCQ 66
Score = 56.2 bits (134), Expect = 5e-09
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPP-PVKCQ----ETCAPKTKDPCAPQVKKQCPPKG 58
QQQ +Q Q PPQ + K+PC P P C E C PK +PC P+V + CP
Sbjct: 18 QQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPKVPEPCQPKVPEPCPSTV 77
Query: 59 TIIPAQQK 66
T PAQQK
Sbjct: 78 TPAPAQQK 85
>gi|62945419 small proline-rich protein 2F [Homo sapiens]
Length = 72
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/65 (47%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 19 QQQQVKQPCQPPPV----KCQETC-APKTKDPCAP----------QVKKQCPPKGTIIPA 63
QQQQ KQPCQPPPV KC E C PK +PC P Q +++CPP P
Sbjct: 4 QQQQCKQPCQPPPVCPAPKCPEPCPPPKCPEPCPPSKCPQSCPPQQCQQKCPPVTPSPPC 63
Query: 64 QQKCP 68
Q KCP
Sbjct: 64 QPKCP 68
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 11 QQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTK 43
Q CPPQ+ QQ K P P CQ C PK+K
Sbjct: 43 QSCPPQQCQQ---KCPPVTPSPPCQPKCPPKSK 72
>gi|83582817 small proline-rich protein 2E [Homo sapiens]
Length = 72
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/65 (47%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 19 QQQQVKQPCQPPPV----KCQETC-APKTKDPCAP----------QVKKQCPPKGTIIPA 63
QQQQ KQPCQPPPV KC E C PK +PC P Q +++CPP P
Sbjct: 4 QQQQCKQPCQPPPVCPTPKCPEPCPPPKCPEPCPPPKCPQPCPPQQCQQKCPPVTPSPPC 63
Query: 64 QQKCP 68
Q KCP
Sbjct: 64 QPKCP 68
Score = 32.7 bits (73), Expect = 0.064
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 11 QQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTK 43
Q CPPQ+ QQ K P P CQ C PK+K
Sbjct: 43 QPCPPQQCQQ---KCPPVTPSPPCQPKCPPKSK 72
>gi|62122851 small proline-rich protein 2G [Homo sapiens]
Length = 73
Score = 54.7 bits (130), Expect = 2e-08
Identities = 32/71 (45%), Positives = 34/71 (47%), Gaps = 17/71 (23%)
Query: 19 QQQQVKQPCQPPPV----KCQETCAPK------TKDPCAPQVKKQCPPKGTIIPAQQKCP 68
QQQQ KQPCQPPPV KC E C P PC P+ CPP P Q KCP
Sbjct: 4 QQQQCKQPCQPPPVCPTPKCPEPCPPPKCPEPYLPPPCPPE---HCPPP----PCQDKCP 56
Query: 69 SAQQASKSKQK 79
Q +QK
Sbjct: 57 PVQPYPPCQQK 67
>gi|56699492 small proline-rich protein 2D [Homo sapiens]
Length = 72
Score = 53.5 bits (127), Expect = 4e-08
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 19 QQQQVKQPCQPPPV----KCQETC----------APKTKDPCAP-QVKKQCPPKGTIIPA 63
QQQQ KQPCQPPPV KC E C +PK PC P Q +++ PP P
Sbjct: 4 QQQQCKQPCQPPPVCPTPKCPEPCPPPKCPEPCPSPKCPQPCPPQQCQQKYPPVTPSPPC 63
Query: 64 QQKCP 68
Q KCP
Sbjct: 64 QPKCP 68
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 11 QQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTK 43
Q CPPQ+ QQ K P P CQ C PK+K
Sbjct: 43 QPCPPQQCQQ---KYPPVTPSPPCQPKCPPKSK 72
>gi|5174693 small proline-rich protein 2A [Homo sapiens]
Length = 72
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 19 QQQQVKQPCQPPPV----KCQETC-APKTKDPC-APQVKKQCPPKGTIIPAQQKCPSAQQ 72
QQQQ KQPCQPPPV KC E C PK +PC P+ + CPP+ QQK P
Sbjct: 4 QQQQCKQPCQPPPVCPTPKCPEPCPPPKCPEPCPPPKCPQPCPPQ----QCQQKYPPVTP 59
Query: 73 ASKSKQK 79
+ + K
Sbjct: 60 SPPCQSK 66
Score = 47.4 bits (111), Expect = 3e-06
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETC-APKTKDPCAP-QVKKQCPPKG 58
MS QQQQ +Q PP + +PC PP KC E C PK PC P Q +++ PP
Sbjct: 1 MSYQQQQCKQPCQPPPVCPTPKCPEPCPPP--KCPEPCPPPKCPQPCPPQQCQQKYPPVT 58
Query: 59 TIIPAQQKCP 68
P Q K P
Sbjct: 59 PSPPCQSKYP 68
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 11 QQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTK 43
Q CPPQ+ QQ K P P CQ PK+K
Sbjct: 43 QPCPPQQCQQ---KYPPVTPSPPCQSKYPPKSK 72
>gi|148229144 small proline-rich protein 3 [Homo sapiens]
Length = 169
Score = 51.6 bits (122), Expect = 1e-07
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTI 60
MSS QQ+ Q PP + QQQQVKQP QPPP QE P TK+PC +V + P T
Sbjct: 1 MSSYQQK--QTFTPPPQLQQQQVKQPSQPPP---QEIFVPTTKEPCHSKVPQ---PGNTK 52
Query: 61 IP 62
IP
Sbjct: 53 IP 54
>gi|4885607 small proline-rich protein 3 [Homo sapiens]
Length = 169
Score = 51.6 bits (122), Expect = 1e-07
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTI 60
MSS QQ+ Q PP + QQQQVKQP QPPP QE P TK+PC +V + P T
Sbjct: 1 MSSYQQK--QTFTPPPQLQQQQVKQPSQPPP---QEIFVPTTKEPCHSKVPQ---PGNTK 52
Query: 61 IP 62
IP
Sbjct: 53 IP 54
>gi|62955831 small proline-rich protein 2B [Homo sapiens]
Length = 72
Score = 51.6 bits (122), Expect = 1e-07
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 10/56 (17%)
Query: 19 QQQQVKQPCQPPPV----KCQETC-APKTKDPC-APQVKKQCPPKGTIIPAQQKCP 68
QQQQ KQPCQPPPV KC E C PK +PC P+ + CPP+ QQK P
Sbjct: 4 QQQQCKQPCQPPPVCPTPKCPEPCPPPKCPEPCPPPKCPQPCPPQ----QCQQKYP 55
Score = 47.0 bits (110), Expect = 3e-06
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETC-APKTKDPCAP-QVKKQCPPKG 58
MS QQQQ +Q PP + +PC PP KC E C PK PC P Q +++ PP
Sbjct: 1 MSYQQQQCKQPCQPPPVCPTPKCPEPCPPP--KCPEPCPPPKCPQPCPPQQCQQKYPPVT 58
Query: 59 TIIPAQQKCP 68
P Q K P
Sbjct: 59 PSPPCQPKYP 68
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 11 QQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTK 43
Q CPPQ+ QQ K P P CQ PK+K
Sbjct: 43 QPCPPQQCQQ---KYPPVTPSPPCQPKYPPKSK 72
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 43.5 bits (101), Expect = 4e-05
Identities = 24/53 (45%), Positives = 27/53 (50%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPP 56
QQQQ+QQQQ Q+ QQQQ P PPP Q P P PQ + PP
Sbjct: 21 QQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPLLPQPQPPPPP 73
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 16 QRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPAQQKCP 68
Q+ QQQQ +Q Q + Q+ P P PQ+ + P ++P Q P
Sbjct: 19 QQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPLLPQPQPPP 71
>gi|30410045 late cornified envelope 2A [Homo sapiens]
Length = 106
Score = 43.5 bits (101), Expect = 4e-05
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 21 QQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPP 56
QQ +Q CQPPP KC C PK C PQ CPP
Sbjct: 4 QQNQQQCQPPP-KCPPKCPPKCPPKCRPQCPAPCPP 38
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 43.5 bits (101), Expect = 4e-05
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 21 QQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK 57
QQ +Q CQPPP KC C PK C P+ +CPP+
Sbjct: 4 QQSQQQCQPPP-KCTPKCPPKCTPKCPPKCPPKCPPQ 39
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 7 QRQQQQCPPQRAQQQQVKQPCQPP-PVKCQETCAPKTKDPCAPQVKKQC 54
Q+ QQQC P + C P P KC C P+ PC P V C
Sbjct: 4 QQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCC 52
>gi|30410047 late cornified envelope 2C [Homo sapiens]
Length = 110
Score = 40.4 bits (93), Expect = 3e-04
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 21 QQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK--GTIIPAQQKC 67
QQ +Q CQPPP KC C PK C P+ +CPP+ PA C
Sbjct: 4 QQNQQQCQPPP-KCPPKCTPK----CPPKCPPKCPPQCPAPCFPAVSSC 47
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 1 MSSQQQQRQQQ---QCPPQRAQQQQVKQPCQPP-PVKCQETCAPKTKDPCAPQVKKQCPP 56
MS QQ Q+Q Q +CPP+ C P P KC C P+ PC P V C P
Sbjct: 1 MSCQQNQQQCQPPPKCPPK----------CTPKCPPKCPPKCPPQCPAPCFPAVSSCCGP 50
>gi|30387656 late cornified envelope 1B [Homo sapiens]
Length = 118
Score = 40.0 bits (92), Expect = 4e-04
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 21 QQVKQPCQPPPVKCQETCAPKTKDP-CAPQVKKQCPP 56
QQ +Q CQPPP KC C PK P C P+ +CPP
Sbjct: 4 QQNQQQCQPPP-KCIPKCPPKCLTPRCPPKCPPKCPP 39
>gi|30410043 late cornified envelope 2D [Homo sapiens]
Length = 110
Score = 39.7 bits (91), Expect = 5e-04
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 21 QQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK--GTIIPAQQKC 67
QQ +Q CQPPP KC C PK C P+ +CPP+ PA C
Sbjct: 4 QQNQQQCQPPP-KCPPKCTPK----CPPKCPPKCPPQCPAPCSPAVSSC 47
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 1 MSSQQQQRQQQ---QCPPQRAQQQQVKQPCQPP-PVKCQETCAPKTKDPCAPQVKKQCPP 56
MS QQ Q+Q Q +CPP+ C P P KC C P+ PC+P V C P
Sbjct: 1 MSCQQNQQQCQPPPKCPPK----------CTPKCPPKCPPKCPPQCPAPCSPAVSSCCGP 50
>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
Length = 1424
Score = 39.3 bits (90), Expect = 7e-04
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK 57
QQQQ+QQQQ Q+ QQQQ Q PPP T +P A Q PP+
Sbjct: 1257 QQQQQQQQQQQQQQQQQQQQTQAFSPPP---NVTASPSMDGLLAGPTMPQAPPQ 1307
>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
Length = 1420
Score = 39.3 bits (90), Expect = 7e-04
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK 57
QQQQ+QQQQ Q+ QQQQ Q PPP T +P A Q PP+
Sbjct: 1253 QQQQQQQQQQQQQQQQQQQQTQAFSPPP---NVTASPSMDGLLAGPTMPQAPPQ 1303
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 39.3 bits (90), Expect = 7e-04
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 4 QQQQRQQQQCPPQ---------RAQQQQVKQPCQP-----PPVKCQETCAPKTKDPCAPQ 49
QQQQ+QQQQ PP +A Q +QP QP PP Q+ AP ++ APQ
Sbjct: 188 QQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQ 247
Query: 50 VKKQCPPKGTIIPAQQKCPS-AQQASKSKQK 79
++ P + Q PS QQ+S QK
Sbjct: 248 PQQHQPHSHS---QNQNQPSPTQQSSSPPQK 275
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 2 SSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTII 61
SS Q QQ Q Q+ QQQQ +QP PP AP+ AP +Q P + T
Sbjct: 173 SSLNSQLQQLQLQLQQQQQQQQQQP--PPSTNQHPQPAPQ-----APSQSQQQPLQPT-- 223
Query: 62 PAQQKCPSAQQ 72
P QQ P++QQ
Sbjct: 224 PPQQPPPASQQ 234
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKG 58
QQQQ+QQQQ Q+ QQQQ +QP Q PP P+T+ P + P G
Sbjct: 217 QQQQQQQQQQQQQQQQQQQQQQPQQQPP-------QPQTQQQQQPALVNYNRPSG 264
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAP------KTKDPCAPQVKKQC 54
+ QQQQ+QQQQ Q+ QQQQ + QPP + Q+ P + P P++
Sbjct: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGP-GPELSGPS 273
Query: 55 PPKGTIIPAQQKCPS 69
P+ +PA PS
Sbjct: 274 TPQKLPVPAPGGRPS 288
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKG 58
QQQQ+QQQQ Q+ QQQQ +QP Q PP P+T+ P + P G
Sbjct: 217 QQQQQQQQQQQQQQQQQQQQQQPQQQPP-------QPQTQQQQQPALVNYNRPSG 264
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAP------KTKDPCAPQVKKQC 54
+ QQQQ+QQQQ Q+ QQQQ + QPP + Q+ P + P P++
Sbjct: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGP-GPELSGPS 273
Query: 55 PPKGTIIPAQQKCPS 69
P+ +PA PS
Sbjct: 274 TPQKLPVPAPGGRPS 288
>gi|7657685 late cornified envelope 2B [Homo sapiens]
Length = 110
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 1 MSSQQQQRQQQ---QCPPQRAQQQQVKQPCQPP-PVKCQETCAPKTKDPCAPQVKKQCPP 56
MS QQ Q+Q Q +CPP+ C P P KC C P+ PC+P V C P
Sbjct: 1 MSCQQNQQQCQPPPKCPPK----------CTPKCPPKCPPKCLPQCPAPCSPAVSSCCGP 50
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQ 53
+ QQQQ+QQQQ Q+ QQQQ +Q Q + Q+ P+ + PQ ++Q
Sbjct: 2088 LRQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQ 2140
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPA 63
QQQQ+QQQQ Q+ QQ Q +Q Q P + Q P+ + Q ++Q +
Sbjct: 2099 QQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQL 2158
Query: 64 QQKCPSAQ 71
QQ+ + Q
Sbjct: 2159 QQQLSNTQ 2166
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQE 36
+ QQQQ+QQQQ Q+ QQQQ +Q Q ++ Q+
Sbjct: 2048 LPEQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQ 2083
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPA 63
QQQQ +QQ Q+ QQQQ +Q Q + Q+ + + PQ + Q P+
Sbjct: 2083 QQQQILRQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGL 2142
Query: 64 QQKCPSAQQASKSKQ 78
QQ Q A+ +Q
Sbjct: 2143 QQTQQQQQTAALVRQ 2157
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQE 36
QQQQ+QQQQ Q+ QQ ++Q Q ++ Q+
Sbjct: 2060 QQQQQQQQQQQQQQQQQYHIRQQQQQQILRQQQ 2092
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPA 63
QQQQ+QQQQ ++ QQQQ+ + Q + Q+ + + Q + Q + P
Sbjct: 2068 QQQQQQQQQYHIRQQQQQQILRQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPP 2127
Query: 64 QQKCPSAQQ 72
Q + S Q
Sbjct: 2128 QPQPQSQPQ 2136
>gi|58082087 late cornified envelope-like proline-rich 1 [Homo
sapiens]
Length = 98
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 3 SQQQQRQQQQCPPQRAQQQQVKQPCQPPPVK-----CQETC------APKTKDPCAPQVK 51
S + + + C P+ Q+ + K CQP +K C E C AP PC Q
Sbjct: 9 SNDPKTEPKNCDPKCEQKCESK--CQPSCLKKLLQRCFEKCPWEKCPAPPKCLPCPSQSP 66
Query: 52 KQCPPKGTIIPAQQKCPSA 70
CPP+ P KCPS+
Sbjct: 67 SSCPPQPCTKPCPPKCPSS 85
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 11 QQCP-PQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPP 56
++CP P + + P PP C + C PK C CPP
Sbjct: 50 EKCPAPPKCLPCPSQSPSSCPPQPCTKPCPPKCPSSCPHACPPPCPP 96
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTI 60
MS + QQ+QQQQ Q+ QQQQ +Q QPPP P A P ++
Sbjct: 161 MSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPA-AANVRKPGGSGLLASPAAAPSPSSSSV 219
Query: 61 IPAQQKCPSAQQASKS 76
+ PS+ A+ S
Sbjct: 220 SSSSATAPSSVVAATS 235
>gi|30387648 late cornified envelope 1D [Homo sapiens]
Length = 114
Score = 37.4 bits (85), Expect = 0.003
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 21 QQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPP 56
QQ +Q CQPPP KC C PK AP+ +CPP
Sbjct: 4 QQSQQQCQPPP-KCTPKCTPKCP---APKCPPKCPP 35
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 37.0 bits (84), Expect = 0.003
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK-GTIIP 62
QQQQRQ QQ Q+ QQQQ K P P K+ P+ +K P + ++P
Sbjct: 3377 QQQQRQLQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESPKPEEQKNTPREVSPLLP 3436
Query: 63 AQQKCPSAQQAS 74
+ P A+ S
Sbjct: 3437 KLPEEPEAESKS 3448
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 5 QQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPAQ 64
Q Q +Q Q P+ QQ+Q +Q P K + + P PQ Q PP +P
Sbjct: 2442 QTQEKQGQPKPELQQQEQPEQKTNTPQQKLPQLVSL----PSLPQPPPQAPPPQCPLP-- 2495
Query: 65 QKCPSAQQAS 74
Q PS Q S
Sbjct: 2496 QSSPSPSQLS 2505
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 12 QCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTIIPAQQKCPSAQ 71
Q PPQ+ QQQQ Q QPPP P + P PQ+ Q QQ+
Sbjct: 3193 QQPPQQQQQQQQPQVQQPPP-------PPAAQPPPTPQLPLQ--------QQQQRKDKDS 3237
Query: 72 QASKSKQK 79
+ K K+K
Sbjct: 3238 EKVKEKEK 3245
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 2 SSQQQQRQQQQCPPQRAQQQQVKQPCQ 28
S QQQQ+QQQQ Q+ QQQQ + Q
Sbjct: 1721 SRQQQQQQQQQQQQQQQQQQQAQTLAQ 1747
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQ 25
++S+QQQ+QQQQ Q+ QQQQ Q
Sbjct: 1719 IASRQQQQQQQQQQQQQQQQQQQAQ 1743
Score = 28.9 bits (63), Expect = 0.93
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 22/91 (24%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAP--------KTKDPCAPQVK- 51
M QQ +QQQQ QQ QV+QP PPP Q P + KD + +VK
Sbjct: 3190 MGPQQPPQQQQQ-----QQQPQVQQP--PPPPAAQPPPTPQLPLQQQQQRKDKDSEKVKE 3242
Query: 52 --KQCPPKGTIIPAQQK----CPSAQQASKS 76
K KG +P +K P+A A+ S
Sbjct: 3243 KEKAHKGKGEPLPVPKKEKGEAPTATAATIS 3273
Score = 28.9 bits (63), Expect = 0.93
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 2 SSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPKGTII 61
S Q+ +QQQQ Q+ QQQ+V+Q QP K +T P P AP K P K +
Sbjct: 3370 SLQEAIQQQQQRQLQQQQQQKVQQQ-QP---KASQTPVP----PGAPSPDKD-PAKESPK 3420
Query: 62 PAQQK 66
P +QK
Sbjct: 3421 PEEQK 3425
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 1 MSSQQQQRQQQQCPPQRAQQQQ 22
M + +QQ+QQQQ Q+ QQQQ
Sbjct: 1718 MIASRQQQQQQQQQQQQQQQQQ 1739
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQ 28
QQQQ+QQQQ Q+ QQ Q Q
Sbjct: 1725 QQQQQQQQQQQQQQQQQAQTLAQAQ 1749
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 4 QQQQRQQQQCPPQRAQQQQVKQPCQ-PPPVKCQETCAPKTKDPCAPQVKKQCPPKG 58
QQQQ+Q Q PPQ++Q QQ + P Q P V + D C P KQ +G
Sbjct: 301 QQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPGGKQAGAEG 356
Score = 35.4 bits (80), Expect = 0.010
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 10 QQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPC-APQVKKQCPPKGTIIPAQQKC- 67
QQQ PP QQQQ +QP QPPP Q++ + + P P PP T P+ C
Sbjct: 291 QQQQPPPPQQQQQQQQPPQPPP---QQSQPQQQQAPAQGPSAVGGAPPLHT--PSTDGCT 345
Query: 68 -PSAQQA 73
P +QA
Sbjct: 346 PPGGKQA 352
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 2 SSQQQQRQQQQCPPQRAQQQQVKQPCQPPPVKCQETCAPKTKDPCAPQVKKQCPPK 57
++QQ Q+QQQQ Q+ QQQQ +Q QP P + Q P+ + P+ ++ PP+
Sbjct: 91 NNQQPQQQQQQ---QQPQQQQPQQQPQPQPQQQQ----PQQQPQALPRYPREVPPR 139
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.121 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,237,651
Number of Sequences: 37866
Number of extensions: 217372
Number of successful extensions: 4111
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 1424
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.